IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
563	 62.55	0	664782..665048	+	88	58580265	-	XOO0642	-	hypothetical protein
564	 62.99	0	665017..665397	-	126	58580266	exsF	XOO0643	-	regulatory protein
565	 62.87	0	665623..667332	+	569	122879033	cheR	XOO0644	-	methyltransferase
566	 61.54	0	667320..667592	+	90	58580268	cheR	XOO0645	-	methyltransferase
567	 59.09	-1	667637..667900	+	87	121632034	-	XOO4723	-	IS1404 transposase
568	 63.12	0	667753..668739	+	328	58580269	-	XOO0646	-	IS1404 transposase
569	 62.47	0	668873..670255	-	460	122879034	-	XOO0647	-	putative ISXo8 transposase
570	 60.14	-1	670635..670910	+	91	58580271	-	XOO0648	-	hypothetical protein
571	 66.75	0	671219..672433	-	404	58580272	-	XOO0649	-	D-amino acid oxidase
572	 65.19	0	672708..673250	+	180	58580273	-	XOO0650	-	hypothetical protein
573	 65.91	0	673251..674039	+	262	58580275	-	XOO0652	-	hypothetical protein
574	 63.84	0	674760..675854	+	364	58580278	-	XOO0655	-	transposase
575	 62.69	0	675941..676141	+	66	58580279	algR	XOO0656	-	transcriptional regulator protein
576	 63.55	0	676264..676584	+	106	58580280	-	XOO0657	-	hypothetical protein
577	 65.57	0	676803..678437	+	544	58580282	ybeC	XOO0659	-	amino acid transporter
578	 62.69	0	678769..679674	-	301	58580283	-	XOO0660	-	hypothetical protein
579	 66.67	0	680520..680852	+	110	121632035	-	XOO4724	-	hypothetical protein
580	 63.45	0	681181..683295	-	704	58580285	-	XOO0662	-	metallopeptidase
581	 65.52	0	683401..684096	-	231	122879035	-	XOO0663	-	hypothetical protein
582	 64.76	0	684337..685332	-	331	58580287	-	XOO0664	-	oxidoreductase
583	 64.91	0	685472..686041	-	189	122879036	wrbA	XOO0665	-	tryptophan repressor binding protein
584	 64.54	0	686154..686435	+	93	58580289	-	XOO0666	-	hypothetical protein
585	 71.25	+2	686533..687012	+	159	58580290	-	XOO0667	-	hypothetical protein
586	 66.12	0	686988..687353	+	121	58580291	-	XOO0668	-	hypothetical protein
587	 63.86	0	687551..688795	+	414	58580292	-	XOO0669	-	hypothetical protein
588	 65.94	0	688802..689908	+	368	58580293	-	XOO0670	-	DNA polymerase related protein
589	 61.74	0	690901..691509	-	202	58580294	-	XOO0671	-	hypothetical protein
590	 63.19	0	691826..693061	-	411	58580295	-	XOO0672	-	transposase
591	 65.51	0	693252..694289	-	345	58580297	-	XOO0674	-	putative transposase
592	 59.58	-1	694547..694927	+	126	121632036	-	XOO4725	-	hypothetical protein
593	 65.51	0	695395..697032	+	545	122879037	yjcE	XOO0675	-	Na+:H+ antiporter
594	 62.65	0	697279..698223	+	314	58580299	yadG	XOO0676	-	ABC transporter ATP-binding protein
595	 61.11	0	698226..698981	+	251	58580300	-	XOO0677	-	ABC-2 type transporter
596	 64.60	0	699396..699782	-	128	58580301	-	XOO0678	-	hypothetical protein
597	 63.25	0	699750..700364	+	204	58580302	-	XOO0679	-	hypothetical protein
598	 66.77	0	700493..702400	-	635	122879038	-	XOO0680	-	protease
599	 69.91	+1	702447..705530	-	1027	122879039	xadA	XOO0681	-	outer membrane protein
600	 65.46	0	705253..706995	+	580	58580305	cvgSY	XOO0682	-	histidine kinase/response regulator hybrid protein
601	 65.43	0	706977..707705	-	242	58580306	-	XOO0683	-	two-component response regulator
602	 67.02	0	707881..708165	-	94	121632037	-	XOO4727	-	hypothetical protein
603	 66.14	0	708174..708740	-	188	58580308	-	XOO0685	-	hypothetical protein
604	 65.43	0	709127..710260	-	377	58580310	motB	XOO0687	-	flagellar motor protein MotB
605	 61.99	0	710271..711125	-	284	58580311	motA	XOO0688	-	flagellar motor protein MotA
606	 64.58	0	711223..711462	-	79	58580312	-	XOO0689	-	hypothetical protein
607	 65.16	0	712020..712484	-	154	58580313	-	XOO0690	-	methionine sulfoxide reductase B
608	 70.78	+1	712753..713190	+	145	58580314	-	XOO0691	-	hypothetical protein
609	 63.12	0	713242..713721	-	159	58580315	lrp	XOO0692	-	leucine responsive regulatory protein
610	 67.98	+1	713870..715159	+	429	161899017	dadA	XOO0693	-	D-amino acid dehydrogenase small subunit
611	 68.30	+1	715159..716259	+	366	58580317	alr	XOO0694	-	alanine racemase
612	 65.78	0	716662..717336	-	224	58580318	-	XOO0695	-	hypothetical protein
613	 63.25	0	717431..717928	+	165	58580319	-	XOO0696	-	hypothetical protein
614	 65.15	0	717894..718223	+	109	58580320	-	XOO0697	-	hypothetical protein
615	 63.82	0	718310..720346	+	678	58580321	-	XOO0698	-	sensor histidine kinase
616	 60.47	0	720801..721139	+	112	58580322	-	XOO0699	-	hypothetical protein
617	 63.90	0	721228..722565	+	445	58580323	sndH	XOO0700	-	L-sorbosone dehydrogenase
618	 60.94	0	723126..723509	-	127	58580324	-	XOO0701	-	hypothetical protein
619	 68.03	+1	723529..724626	+	365	58580325	rsmC	XOO0702	-	ribosomal RNA small subunit methyltransferase C
620	 63.87	0	724623..725336	+	237	58580326	rsuA	XOO0703	-	ribosomal small subunit pseudouridylate synthase
621	 67.84	+1	725333..726013	+	226	58580327	-	XOO0704	-	hypothetical protein
622	 67.08	0	726756..727235	-	159	58580329	-	XOO0706	-	oxidoreductase
623	 62.46	0	727378..728019	-	213	58580330	-	XOO0707	-	hypothetical protein
624	 68.40	+1	728097..728960	-	287	58580331	-	XOO0708	-	hypothetical protein
625	 58.85	-1	730684..731169	-	161	122879040	-	XOO0711	-	nucleotide-binding protein
626	 69.34	+1	731277..732173	+	298	58580335	-	XOO0712	-	hypothetical protein
627	 66.58	0	732097..733299	+	400	58580336	abc	XOO0713	-	ABC transporter ATP-binding protein
628	 68.68	+1	733296..733991	+	231	58580337	yaeE	XOO0714	-	ABC transporter permease
629	 61.92	0	734086..734886	+	266	58580338	-	XOO0715	-	outer membrane protein
630	 66.31	0	735263..735820	+	185	58580339	-	XOO0716	-	hypothetical protein
631	 63.90	0	736105..736791	-	228	58580340	ompW	XOO0717	-	outer membrane protein
632	 63.99	0	736933..737493	+	186	58580341	-	XOO0718	-	hypothetical protein
633	 65.48	0	737675..738433	+	252	122879041	-	XOO0719	-	hypothetical protein
634	 67.06	0	738563..740356	+	597	161899016	phdB	XOO0720	-	dihydrolipoamide acetyltransferase
635	 68.52	+1	740353..741000	+	215	58580344	-	XOO0721	-	hypothetical protein
636	 65.95	0	741017..742840	+	607	122879042	lpdA	XOO0722	-	dihydrolipoamide dehydrogenase
637	 68.38	+1	742902..743192	+	96	58580346	-	XOO0723	-	hypothetical protein
638	 61.62	0	743331..744143	-	270	58580347	-	XOO0724	-	hypothetical protein
639	 60.92	0	744607..745041	+	144	58580348	-	XOO0725	-	hypothetical protein
640	 59.80	-1	745067..745867	+	266	58580349	atpB	XOO0726	-	F0F1 ATP synthase subunit A
641	 65.68	0	745940..746242	+	100	58580350	atpE	XOO0727	-	F0F1 ATP synthase subunit C
642	 60.72	0	746357..746827	+	156	58580351	atpF	XOO0728	-	F0F1 ATP synthase subunit B
643	 67.99	+1	746831..747358	+	175	58580352	atpH	XOO0729	-	F0F1 ATP synthase subunit delta
644	 63.82	0	747406..748953	+	515	58580353	atpA	XOO0730	-	F0F1 ATP synthase subunit alpha
645	 61.23	0	749147..750010	+	287	58580354	atpG	XOO0731	-	F0F1 ATP synthase subunit gamma
646	 62.97	0	750155..751561	+	468	122879043	atpD	XOO0732	-	F0F1 ATP synthase subunit beta
647	 64.54	0	751705..752127	+	140