IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
562	 63.28	0	663484..664782	+	432	58580264	-	XOO0641	-	NtrC family transcriptional regulator
563	 62.55	0	664782..665048	+	88	58580265	-	XOO0642	-	hypothetical protein
564	 62.99	0	665017..665397	-	126	58580266	exsF	XOO0643	-	regulatory protein
565	 62.87	0	665623..667332	+	569	122879033	cheR	XOO0644	-	methyltransferase
566	 61.54	0	667320..667592	+	90	58580268	cheR	XOO0645	-	methyltransferase
567	 59.09	-1	667637..667900	+	87	121632034	-	XOO4723	-	IS1404 transposase
568	 63.12	0	667753..668739	+	328	58580269	-	XOO0646	-	IS1404 transposase
569	 62.47	0	668873..670255	-	460	122879034	-	XOO0647	-	putative ISXo8 transposase
570	 60.14	-1	670635..670910	+	91	58580271	-	XOO0648	-	hypothetical protein
571	 66.75	0	671219..672433	-	404	58580272	-	XOO0649	-	D-amino acid oxidase
572	 65.19	0	672708..673250	+	180	58580273	-	XOO0650	-	hypothetical protein
573	 65.91	0	673251..674039	+	262	58580275	-	XOO0652	-	hypothetical protein
574	 63.84	0	674760..675854	+	364	58580278	-	XOO0655	-	transposase
575	 62.69	0	675941..676141	+	66	58580279	algR	XOO0656	-	transcriptional regulator protein
576	 63.55	0	676264..676584	+	106	58580280	-	XOO0657	-	hypothetical protein
577	 65.57	0	676803..678437	+	544	58580282	ybeC	XOO0659	-	amino acid transporter
578	 62.69	0	678769..679674	-	301	58580283	-	XOO0660	-	hypothetical protein
579	 66.67	0	680520..680852	+	110	121632035	-	XOO4724	-	hypothetical protein
580	 63.45	0	681181..683295	-	704	58580285	-	XOO0662	-	metallopeptidase
581	 65.52	0	683401..684096	-	231	122879035	-	XOO0663	-	hypothetical protein
582	 64.76	0	684337..685332	-	331	58580287	-	XOO0664	-	oxidoreductase
583	 64.91	0	685472..686041	-	189	122879036	wrbA	XOO0665	-	tryptophan repressor binding protein
584	 64.54	0	686154..686435	+	93	58580289	-	XOO0666	-	hypothetical protein
585	 71.25	+2	686533..687012	+	159	58580290	-	XOO0667	-	hypothetical protein
586	 66.12	0	686988..687353	+	121	58580291	-	XOO0668	-	hypothetical protein
587	 63.86	0	687551..688795	+	414	58580292	-	XOO0669	-	hypothetical protein
588	 65.94	0	688802..689908	+	368	58580293	-	XOO0670	-	DNA polymerase related protein
589	 61.74	0	690901..691509	-	202	58580294	-	XOO0671	-	hypothetical protein
590	 63.19	0	691826..693061	-	411	58580295	-	XOO0672	-	transposase
591	 65.51	0	693252..694289	-	345	58580297	-	XOO0674	-	putative transposase
592	 59.58	-1	694547..694927	+	126	121632036	-	XOO4725	-	hypothetical protein
593	 65.51	0	695395..697032	+	545	122879037	yjcE	XOO0675	-	Na+:H+ antiporter
594	 62.65	0	697279..698223	+	314	58580299	yadG	XOO0676	-	ABC transporter ATP-binding protein
595	 61.11	0	698226..698981	+	251	58580300	-	XOO0677	-	ABC-2 type transporter
596	 64.60	0	699396..699782	-	128	58580301	-	XOO0678	-	hypothetical protein
597	 63.25	0	699750..700364	+	204	58580302	-	XOO0679	-	hypothetical protein
598	 66.77	0	700493..702400	-	635	122879038	-	XOO0680	-	protease
599	 69.91	+1	702447..705530	-	1027	122879039	xadA	XOO0681	-	outer membrane protein
600	 65.46	0	705253..706995	+	580	58580305	cvgSY	XOO0682	-	histidine kinase/response regulator hybrid protein
601	 65.43	0	706977..707705	-	242	58580306	-	XOO0683	-	two-component response regulator
602	 67.02	0	707881..708165	-	94	121632037	-	XOO4727	-	hypothetical protein
603	 66.14	0	708174..708740	-	188	58580308	-	XOO0685	-	hypothetical protein
604	 65.43	0	709127..710260	-	377	58580310	motB	XOO0687	-	flagellar motor protein MotB
605	 61.99	0	710271..711125	-	284	58580311	motA	XOO0688	-	flagellar motor protein MotA
606	 64.58	0	711223..711462	-	79	58580312	-	XOO0689	-	hypothetical protein
607	 65.16	0	712020..712484	-	154	58580313	-	XOO0690	-	methionine sulfoxide reductase B
608	 70.78	+1	712753..713190	+	145	58580314	-	XOO0691	-	hypothetical protein
609	 63.12	0	713242..713721	-	159	58580315	lrp	XOO0692	-	leucine responsive regulatory protein
610	 67.98	+1	713870..715159	+	429	161899017	dadA	XOO0693	-	D-amino acid dehydrogenase small subunit
611	 68.30	+1	715159..716259	+	366	58580317	alr	XOO0694	-	alanine racemase
612	 65.78	0	716662..717336	-	224	58580318	-	XOO0695	-	hypothetical protein
613	 63.25	0	717431..717928	+	165	58580319	-	XOO0696	-	hypothetical protein
614	 65.15	0	717894..718223	+	109	58580320	-	XOO0697	-	hypothetical protein
615	 63.82	0	718310..720346	+	678	58580321	-	XOO0698	-	sensor histidine kinase
616	 60.47	0	720801..721139	+	112	58580322	-	XOO0699	-	hypothetical protein
617	 63.90	0	721228..722565	+	445	58580323	sndH	XOO0700	-	L-sorbosone dehydrogenase
618	 60.94	0	723126..723509	-	127	58580324	-	XOO0701	-	hypothetical protein
619	 68.03	+1	723529..724626	+	365	58580325	rsmC	XOO0702	-	ribosomal RNA small subunit methyltransferase C
620	 63.87	0	724623..725336	+	237	58580326	rsuA	XOO0703	-	ribosomal small subunit pseudouridylate synthase
621	 67.84	+1	725333..726013	+	226	58580327	-	XOO0704	-	hypothetical protein
622	 67.08	0	726756..727235	-	159	58580329	-	XOO0706	-	oxidoreductase
623	 62.46	0	727378..728019	-	213	58580330	-	XOO0707	-	hypothetical protein
624	 68.40	+1	728097..728960	-	287	58580331	-	XOO0708	-	hypothetical protein
625	 58.85	-1	730684..731169	-	161	122879040	-	XOO0711	-	nucleotide-binding protein
626	 69.34	+1	731277..732173	+	298	58580335	-	XOO0712	-	hypothetical protein
627	 66.58	0	732097..733299	+	400	58580336	abc	XOO0713	-	ABC transporter ATP-binding protein
628	 68.68	+1	733296..733991	+	231	58580337	yaeE	XOO0714	-	ABC transporter permease
629	 61.92	0	734086..734886	+	266	58580338	-	XOO0715	-	outer membrane protein
630	 66.31	0	735263..735820	+	185	58580339	-	XOO0716	-	hypothetical protein
631	 63.90	0	736105..736791	-	228	58580340	ompW	XOO0717	-	outer membrane protein
632	 63.99	0	736933..737493	+	186	58580341	-	XOO0718	-	hypothetical protein
633	 65.48	0	737675..738433	+	252	122879041	-	XOO0719	-	hypothetical protein
634	 67.06	0	738563..740356	+	597	161899016	phdB	XOO0720	-	dihydrolipoamide acetyltransferase
635	 68.52	+1	740353..741000	+	215	58580344	-	XOO0721	-	hypothetical protein
636	 65.95	0	741017..742840	+	607	122879042	lpdA	XOO0722	-	dihydrolipoamide dehydrogenase
637	 68.38	+1	742902..743192	+	96	58580346	-	XOO0723	-	hypothetical protein
638	 61.62	0	743331..744143	-	270	58580347	-	XOO0724	-	hypothetical protein
639	 60.92	0	744607..745041	+	144	58580348	-	XOO0725	-	hypothetical protein
640	 59.80	-1	745067..745867	+	266	58580349	atpB	XOO0726	-	F0F1 ATP synthase subunit A
641	 65.68	0	745940..746242	+	100	58580350	atpE	XOO0727	-	F0F1 ATP synthase subunit C
642	 60.72	0	746357..746827	+	156	58580351	atpF	XOO0728	-	F0F1 ATP synthase subunit B
643	 67.99	+1	746831..747358	+	175	58580352	atpH	XOO0729	-	F0F1 ATP synthase subunit delta
644	 63.82	0	747406..748953	+	515	58580353	atpA	XOO0730	-	F0F1 ATP synthase subunit alpha
645	 61.23	0	749147..750010	+	287	58580354	atpG	XOO0731	-	F0F1 ATP synthase subunit gamma
646	 62.97	0	750155..751561	+	468	122879043	atpD	XOO0732	-	F0F1 ATP synthase subunit beta
647	 64.54	0	751705..752127	+	140	58580356	atpC	XOO0733	-	F0F1 ATP synthase subunit epsilon
648	 66.84	0	752359..752931	+	190	58580357	pheA	XOO0734	-	chorismate mutase
649	 64.84	0	753454..753837	-	127	58580358	-	XOO0735	-	hypothetical protein
650	 65.55	0	753820..755346	+	508	58580359	glmU	XOO0736	-	UDP-N-acetylglucosamine pyrophosphorylase
651	 62.67	0	755674..755823	-	49	58580360	styS	XOO0737	-	histidine kinase-response regulator hybrid protein
652	 52.70	-2	755854..756075	+	73	58580361	-	XOO0738	-	transposase
653	 62.83	0	756072..757088	-	338	58580362	-	XOO0739	-	transposase
654	 56.62	-2	757305..757712	+	135	58580363	-	XOO0740	-	transposase
655	 60.87	0	758967..759242	+	91	58580366	-	XOO0743	-	hypothetical protein
656	 62.15	0	759214..759390	-	58	58580367	ycfV	XOO0744	-	ABC transporter ATP-binding protein
657	 68.25	+1	759448..760836	-	462	58580368	ybjY	XOO0745	-	ABC transporter permease
658	 64.08	0	760789..762756	+	655	58580369	glmS	XOO0746	-	D-fructose-6-phosphate amidotransferase
659	 65.19	0	763138..763611	+	157	58580370	-	XOO0747	-	hypothetical protein
660	 60.59	0	763843..764418	+	191	58580371	-	XOO0748	-	hypothetical protein
661	 52.50	-2	764424..764663	+	79	58580372	-	XOO0749	-	transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.