IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
527	 60.22	-1	630006..630719	+	237	58580226	traF	XOO0603	-	TraF protein
528	 65.21	0	630733..631212	+	159	58580227	-	XOO0604	-	hypothetical protein
529	 59.18	-1	631323..631469	+	48	121632032	-	XOO4720	-	plasmid-related lipoprotein
530	 59.39	-1	631471..632556	+	361	58580228	traH	XOO0605	-	TraH protein
531	 66.67	0	632862..633020	+	52	121632033	-	XOO4721	-	hypothetical protein
532	 58.88	-1	634333..634743	+	136	122879032	-	XOO0606	-	XorII very-short-patch-repair endonuclease
533	 57.04	-1	634770..636098	+	442	58580230	-	XOO0607	-	modification methylase XorII
534	 55.89	-2	636095..636892	+	265	58580231	afa22MI-R	XOO0608	-	endonuclease
535	 57.25	-1	637152..638426	-	424	58580232	int	XOO0609	-	phage-related integrase
536	 63.77	0	638560..638766	-	68	58580233	-	XOO0610	-	hypothetical protein
537	 68.50	+1	638763..639035	-	90	58580234	-	XOO0611	-	hypothetical protein
538	 65.85	0	639274..639396	-	40	58580235	-	XOO0612	-	hypothetical protein
539	 59.69	-1	639421..639549	-	42	58580236	-	XOO0613	-	hypothetical protein
540	 60.00	-1	639754..639858	+	34	58580237	-	XOO0614	-	IS1404 transposase
541	 63.03	0	641213..642448	-	411	58580241	-	XOO0618	-	transposase
542	 63.03	0	643229..644245	-	338	58580243	-	XOO0620	-	transposase
543	 60.22	-1	644416..644865	-	149	58580244	tnpA	XOO0621	-	transposase
544	 59.74	-1	644900..645202	+	100	58580245	-	XOO0622	-	IS1404 transposase
545	 64.93	0	646103..647602	+	499	58580247	-	XOO0624	-	hypothetical protein
546	 64.16	0	647557..648870	+	437	58580248	-	XOO0625	-	hypothetical protein
547	 64.19	0	648960..651101	+	713	58580249	-	XOO0626	-	ferrichrome-iron receptor 3
548	 65.17	0	651186..651851	-	221	58580250	-	XOO0627	-	hypothetical protein
549	 65.04	0	651848..652522	-	224	58580251	-	XOO0628	-	hypothetical protein
550	 65.12	0	652519..655239	-	906	58580252	-	XOO0629	-	hypothetical protein
551	 67.60	+1	655187..655936	-	249	58580253	-	XOO0630	-	hypothetical protein
552	 61.03	0	656263..656475	+	70	58580254	-	XOO0631	-	hypothetical protein
553	 60.36	0	656896..657117	-	73	58580255	-	XOO0632	-	hypothetical protein
554	 62.70	0	657127..657378	-	83	58580256	-	XOO0633	-	hypothetical protein
555	 59.39	-1	657833..657997	+	54	58580257	-	XOO0634	-	hypothetical protein
556	 61.03	0	658083..658862	-	259	58580258	ybdR	XOO0635	-	Zn-dependent alcohol dehydrogenase
557	 59.09	-1	659168..659563	-	131	58580259	-	XOO0636	-	putative transposase
558	 58.33	-1	659529..659900	-	123	58580260	-	XOO0637	-	putative transposase
559	 61.95	0	659970..660986	-	338	58580261	cioB	XOO0638	-	cyanide insensitive terminal oxidase
560	 63.86	0	660977..662332	-	451	58580262	cioA	XOO0639	-	cyanide insensitive terminal oxidase
561	 67.54	+1	662396..662968	-	190	58580263	-	XOO0640	-	hypothetical protein
562	 63.28	0	663484..664782	+	432	58580264	-	XOO0641	-	NtrC family transcriptional regulator
563	 62.55	0	664782..665048	+	88	58580265	-	XOO0642	-	hypothetical protein
564	 62.99	0	665017..665397	-	126	58580266	exsF	XOO0643	-	regulatory protein
565	 62.87	0	665623..667332	+	569	122879033	cheR	XOO0644	-	methyltransferase
566	 61.54	0	667320..667592	+	90	58580268	cheR	XOO0645	-	methyltransferase
567	 59.09	-1	667637..667900	+	87	121632034	-	XOO4723	-	IS1404 transposase
568	 63.12	0	667753..668739	+	328	58580269	-	XOO0646	-	IS1404 transposase
569	 62.47	0	668873..670255	-	460	122879034	-	XOO0647	-	putative ISXo8 transposase
570	 60.14	-1	670635..670910	+	91	58580271	-	XOO0648	-	hypothetical protein
571	 66.75	0	671219..672433	-	404	58580272	-	XOO0649	-	D-amino acid oxidase
572	 65.19	0	672708..673250	+	180	58580273	-	XOO0650	-	hypothetical protein
573	 65.91	0	673251..674039	+	262	58580275	-	XOO0652	-	hypothetical protein
574	 63.84	0	674760..675854	+	364	58580278	-	XOO0655	-	transposase
575	 62.69	0	675941..676141	+	66	58580279	algR	XOO0656	-	transcriptional regulator protein
576	 63.55	0	676264..676584	+	106	58580280	-	XOO0657	-	hypothetical protein
577	 65.57	0	676803..678437	+	544	58580282	ybeC	XOO0659	-	amino acid transporter
578	 62.69	0	678769..679674	-	301	58580283	-	XOO0660	-	hypothetical protein
579	 66.67	0	680520..680852	+	110	121632035	-	XOO4724	-	hypothetical protein
580	 63.45	0	681181..683295	-	704	58580285	-	XOO0662	-	metallopeptidase
581	 65.52	0	683401..684096	-	231	122879035	-	XOO0663	-	hypothetical protein
582	 64.76	0	684337..685332	-	331	58580287	-	XOO0664	-	oxidoreductase
583	 64.91	0	685472..686041	-	189	122879036	wrbA	XOO0665	-	tryptophan repressor binding protein
584	 64.54	0	686154..686435	+	93	58580289	-	XOO0666	-	hypothetical protein
585	 71.25	+2	686533..687012	+	159	58580290	-	XOO0667	-	hypothetical protein
586	 66.12	0	686988..687353	+	121	58580291	-	XOO0668	-	hypothetical protein
587	 63.86	0	687551..688795	+	414	58580292	-	XOO0669	-	hypothetical protein
588	 65.94	0	688802..689908	+	368	58580293	-	XOO0670	-	DNA polymerase related protein
589	 61.74	0	690901..691509	-	202	58580294	-	XOO0671	-	hypothetical protein
590	 63.19	0	691826..693061	-	411	58580295	-	XOO0672	-	transposase
591	 65.51	0	693252..694289	-	345	58580297	-	XOO0674	-	putative transposase
592	 59.58	-1	694547..694927	+	126	121632036	-	XOO4725	-	hypothetical protein
593	 65.51	0	695395..697032	+	545	122879037	yjcE	XOO0675	-	Na+:H+ antiporter
594	 62.65	0	697279..698223	+	314	58580299	yadG	XOO0676	-	ABC transporter ATP-binding protein
595	 61.11	0	698226..698981	+	251	58580300	-	XOO0677	-	ABC-2 type transporter
596	 64.60	0	699396..699782	-	128	58580301	-	XOO0678	-	hypothetical protein
597	 63.25	0	699750..700364	+	204	58580302	-	XOO0679	-	hypothetical protein
598	 66.77	0	700493..702400	-	635	122879038	-	XOO0680	-	protease
599	 69.91	+1	702447..705530	-	1027	122879039	xadA	XOO0681	-	outer membrane protein
600	 65.46	0	705253..706995	+	580	58580305	cvgSY	XOO0682	-	histidine kinase/response regulator hybrid protein
601	 65.43	0	706977..707705	-	242	58580306	-	XOO0683	-	two-component response regulator
602	 67.02	0	707881..708165	-	94	121632037	-	XOO4727	-	hypothetical protein
603	 66.14	0	708174..708740	-	188	58580308	-	XOO0685	-	hypothetical protein
604	 65.43	0	709127..710260	-	377	58580310	motB	XOO0687	-	flagellar motor protein MotB
605	 61.99	0	710271..711125	-	284	58580311	motA	XOO0688	-	flagellar motor protein MotA
606	 64.58	0	711223..711462	-	79	58580312	-	XOO0689	-	hypothetical protein
607	 65.16	0	712020..712484	-	154	58580313	-	XOO0690	-	methionine sulfoxide reductase B
608	 70.78	+1	712753..713190	+	145	58580314	-	XOO0691	-	hypothetical protein
609	 63.12	0	713242..713721	-	159	58580315	lrp	XOO0692	-	leucine responsive regulatory protein
610	 67.98	+1	713870..715159	+	429	161899017	dadA	XOO0693	-	D-amino acid dehydrogenase small subunit
611	 68.30	+1	715159..716259	+	366	58580317	alr	XOO0694	-	alanine racemase
612	 65.78	0	716662..717336	-	224	58580318	-	XOO0695	-	hypothetical protein
613	 63.25	0	717431..717928	+	165	58580319	-	XOO0696	-	hypothetical protein
614	 65.15	0	717894..718223	+	109	58580320	-	XOO0697	-	hypothetical protein
615	 63.82	0	718310..720346	+	678	58580321	-	XOO0698	-	sensor histidine kinase
616	 60.47	0	720801..721139	+	112	58580322	-	XOO0699	-	hypothetical protein
617	 63.90	0	721228..722565	+	445	58580323	sndH	XOO0700	-	L-sorbosone dehydrogenase
618	 60.94	0	723126..723509	-	127	58580324	-	XOO0701	-	hypothetical protein
619	 68.03	+1	723529..724626	+	365	58580325	rsmC	XOO0702	-	ribosomal RNA small subunit methyltransferase C
620	 63.87	0	724623..725336	+	237	58580326	rsuA	XOO0703	-	ribosomal small subunit pseudouridylate synthase
621	 67.84	+1	725333..726013	+	226	58580327	-	XOO0704	-	hypothetical protein
622	 67.08	0	726756..727235	-	159	58580329	-	XOO0706	-	oxidoreductase
623	 62.46	0	727378..728019	-	213	58580330	-	XOO0707	-	hypothetical protein
624	 68.40	+1	728097..728960	-	287	58580331	-	XOO0708	-	hypothetical protein
625	 58.85	-1	730684..731169	-	161	122879040	-	XOO0711	-	nucleotide-binding protein
626	 69.34	+1	731277..732173	+	298	58580335	-	XOO0712	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.