IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
394	 62.37	0	465695..466741	+	348	58580080	-	XOO0457	-	putative transposase
395	 63.91	0	466981..467742	+	253	58580082	fabG	XOO0459	-	3-ketoacyl-(acyl-carrier-protein) reductase
396	 62.72	0	468271..469893	-	540	58580083	-	XOO0460	-	halogenase
397	 67.76	+1	469890..470711	-	273	58580084	-	XOO0461	-	dolichyl-phosphate mannose synthase related protein
398	 71.58	+2	470708..471481	-	257	58580085	-	XOO0462	-	hypothetical protein
399	 69.19	+1	471481..472707	-	408	58580086	fabF	XOO0463	-	3-oxoacyl-(acyl carrier protein) synthase I
400	 62.27	0	472728..473159	+	143	58580087	-	XOO0464	-	hypothetical protein
401	 63.31	0	476843..478690	+	615	58580089	-	XOO0466	-	hypothetical protein
402	 63.33	0	478687..480483	+	598	58580090	zwf	XOO0467	-	glucose-6-phosphate 1-dehydrogenase
403	 63.53	0	481071..482282	+	403	58580091	-	XOO0468	-	putative ISXo8 transposase
404	 65.40	0	482382..484199	-	605	58580092	kefC	XOO0469	-	glutathione-regulated potassium-efflux system protein
405	 65.28	0	484877..486244	+	455	58580093	mgtE	XOO0470	-	Mg++ transporter
406	 65.37	0	486316..486930	+	204	122879021	-	XOO0471	-	hypothetical protein
407	 69.32	+1	487217..489925	+	902	58580095	-	XOO0472	-	hypothetical protein
408	 63.22	0	490032..491075	+	347	122879022	-	XOO0473	-	integral membrane protein
409	 62.87	0	491672..494170	+	832	161899022	nrdA	XOO0474	-	ribonucleotide-diphosphate reductase subunit alpha
410	 57.47	-1	494347..495390	+	347	58580098	nrdF	XOO0475	-	ribonucleotide-diphosphate reductase subunit beta
411	 63.95	0	496273..496788	+	171	58580099	-	XOO0476	-	flavodoxin
412	 65.44	0	496760..497086	+	108	58580100	trxA	XOO0477	-	thioredoxin
413	 59.09	-1	497300..497563	+	87	121632029	-	XOO4716	-	IS1404 transposase
414	 63.83	0	497416..498402	+	328	58580101	-	XOO0478	-	IS1404 transposase
415	 72.10	+2	498642..498917	+	91	58580103	gctB	XOO0480	-	glutaconate CoA transferase subunit B
416	 67.58	+1	498914..500122	+	402	58580104	pcaF	XOO0481	-	beta-ketoadipyl CoA thiolase
417	 65.84	0	500201..500929	+	242	58580105	pcaH	XOO0482	-	protocatechuate 3,4-dioxygenase beta chain
418	 67.38	+1	500934..501497	+	187	58580106	pcaG	XOO0483	-	protocatechuate 3,4-dioxygenase alpha chain
419	 68.30	+1	501944..503350	+	468	58580107	pcaB	XOO0484	-	3-carboxy-cis,cis-muconate cycloisomerase
420	 66.41	0	503361..504143	+	260	58580108	catD	XOO0485	-	b-ketoadipate enol-lactone hydrolase
421	 65.27	0	504154..504582	+	142	58580109	pcaC	XOO0486	-	4-carboxymuconolactone decarboxylase
422	 69.52	+1	504853..505692	+	279	58580110	-	XOO0487	-	hydrolase
423	 67.71	+1	506040..506711	-	223	58580111	pcaR	XOO0488	-	transcriptional regulator
424	 64.46	0	507049..507909	+	286	58580112	-	XOO0489	-	hypothetical protein
425	 64.38	0	508139..508618	+	159	58580113	-	XOO0490	-	hypothetical protein
426	 66.78	0	508877..509746	-	289	58580114	-	XOO0491	-	oxidoreductase
427	 68.60	+1	509727..510191	-	154	58580115	-	XOO0492	-	hypothetical protein
428	 69.39	+1	510198..511079	-	293	58580116	-	XOO0493	-	hypothetical protein
429	 64.52	0	511259..513031	-	590	58580117	argS	XOO0494	-	arginyl-tRNA synthetase
430	 68.17	+1	513035..513766	-	243	58580118	radC	XOO0495	-	DNA repair protein RadC
431	 68.16	+1	513809..515083	+	424	58580119	dfp	XOO0496	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
432	 68.59	+1	515080..515547	+	155	58580120	dut	XOO0497	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
433	 64.59	0	516515..517909	+	464	122879023	algC	XOO0498	-	phosphomannomutase
434	 66.49	0	518017..518592	-	191	58580122	-	XOO0499	-	hypothetical protein
435	 60.23	-1	518983..519324	-	113	58580123	-	XOO0500	-	hypothetical protein
436	 64.44	0	519324..520130	-	268	58580124	dpm1	XOO0501	-	dolichol-phosphate mannosyltransferase
437	 65.89	0	520401..521435	-	344	58580125	wbnF	XOO0502	-	nucleotide sugar epimerase
438	 65.05	0	521572..521880	-	102	58580126	mcrB	XOO0503	-	mitomycin resistance protein
439	 68.49	+1	521916..522845	-	309	58580127	parB	XOO0504	-	chromosome partitioning protein
440	 65.91	0	522845..523642	-	265	58580128	parA	XOO0505	-	chromosome partitioning protein
441	 67.99	+1	523756..524433	-	225	58580129	-	XOO0506	-	hypothetical protein
442	 67.88	+1	524459..525118	-	219	161899021	pyrE	XOO0508	-	orotate phosphoribosyltransferase
443	 63.29	0	525189..526046	+	285	58580132	exoA	XOO0509	-	exodeoxyribonuclease III
444	 63.27	0	526366..527661	+	431	58580133	ampG	XOO0510	-	signal transducer
445	 60.53	0	527720..527947	+	75	58580134	-	XOO0511	-	hypothetical protein
446	 68.78	+1	527985..529118	-	377	58580135	anmK	XOO0512	-	anhydro-N-acetylmuramic acid kinase
447	 64.90	0	529489..530907	-	472	58580136	-	XOO0513	-	hypothetical protein
448	 61.60	0	531365..532291	+	308	58580138	tyrS	XOO0515	-	tyrosyl-tRNA synthetase
449	 61.84	0	538321..538797	-	158	58580139	-	XOO0516	-	IS1404 transposase
450	 59.85	-1	539160..539423	-	87	121632030	-	XOO4717	-	IS1404 transposase
451	 66.97	0	539918..542227	-	769	58580142	-	XOO0519	-	two-component system sensor protein
452	 67.65	+1	542228..544054	-	608	122879024	-	XOO0520	-	two-component system regulatory protein
453	 68.96	+1	544237..544890	-	217	58580144	-	XOO0521	-	hypothetical protein
454	 65.45	0	545004..545741	+	245	122879025	-	XOO0522	-	hypothetical protein
455	 61.84	0	545745..545972	+	75	58580146	-	XOO0523	-	hypothetical protein
456	 65.71	0	545985..546194	+	69	58580147	-	XOO0524	-	hypothetical protein
457	 62.59	0	546237..546653	+	138	58580148	-	XOO0525	-	iron-sulfur cluster insertion protein ErpA
458	 60.63	0	547535..548860	+	441	58580149	-	XOO0526	-	hypothetical protein
459	 66.78	0	549167..550057	+	296	122879026	nudC	XOO0527	-	NADH pyrophosphatase
460	 66.89	0	550131..551021	+	296	58580151	ampE	XOO0528	-	transmembrane protein
461	 54.86	-2	551753..552133	-	126	58580152	-	XOO0529	-	transmembrane protein
462	 63.65	0	552594..554516	-	640	58580153	aas	XOO0530	-	2-acylglycerophosphoethanolamine acyltransferase
463	 66.24	0	555836..556777	+	313	58580157	-	XOO0534	-	MFS transporter
464	 65.49	0	556908..559121	-	737	58580158	-	XOO0535	-	hypothetical protein
465	 51.59	-2	559925..561118	-	397	58580159	-	XOO0536	-	hypothetical protein
466	 67.75	+1	561271..562560	-	429	58580160	purD	XOO0537	-	phosphoribosylamine--glycine ligase
467	 51.86	-2	563195..564430	-	411	58580161	-	XOO0538	-	ATPase
468	 65.15	0	564480..566063	-	527	58580162	purH	XOO0539	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
469	 67.17	0	566169..566366	-	65	121632031	-	XOO4718	-	hypothetical protein
470	 67.66	+1	566881..567282	+	133	58580165	-	XOO0542	-	hypothetical protein
471	 66.10	0	567363..568601	+	412	58580166	-	XOO0543	-	hypothetical protein
472	 62.66	0	568598..568996	+	132	58580167	-	XOO0544	-	hypothetical protein
473	 65.19	0	568993..569127	-	44	58580168	-	XOO0545	-	transposase
474	 62.95	0	569176..570009	-	277	58580169	-	XOO0546	-	transposase
475	 56.52	-2	570041..570316	-	91	58580170	-	XOO0547	-	putative ISXo8 transposase
476	 61.90	0	570643..570915	-	90	58580171	fis	XOO0548	-	DNA-binding protein Fis
477	 73.15	+2	571022..572254	-	410