IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4002	 65.36	0	4776317..4776853	+	178	58584101	-	XOO4478	-	microcystin dependent protein
4003	 62.77	0	4776881..4777906	+	341	58584102	-	XOO4479	-	transposase
4004	 60.51	0	4777919..4778194	+	91	58584103	-	XOO4480	-	putative transposase
4005	 65.32	0	4778189..4778929	-	246	58584104	sodC2	XOO4481	-	superoxide dismutase
4006	 70.30	+1	4778892..4779497	-	201	58584105	yojM	XOO4482	-	superoxide dismutase like protein
4007	 66.60	0	4779993..4781441	-	482	58584106	ntrC	XOO4483	-	two-component system regulatory protein
4008	 68.28	+1	4781413..4782468	-	351	58584107	ntrB	XOO4484	-	two-component system sensor protein
4009	 66.33	0	4782740..4784215	-	491	58584109	amtB	XOO4486	-	ammonium transporter
4010	 64.60	0	4784205..4784543	-	112	58584110	glnB	XOO4487	-	nitrogen regulatory protein P-II
4011	 61.56	0	4784821..4786230	-	469	58584111	glnA	XOO4488	-	glutamine synthetase
4012	 64.66	0	4786452..4787249	+	265	122879358	uppP	XOO4489	-	undecaprenyl pyrophosphate phosphatase
4013	 70.14	+1	4787386..4788192	+	268	58584113	-	XOO4490	-	hypothetical protein
4014	 65.20	0	4789346..4790095	-	249	58584116	-	XOO4493	-	hypothetical protein
4015	 70.09	+1	4790152..4792224	-	690	58584117	-	XOO4494	-	hypothetical protein
4016	 66.77	0	4792638..4793627	-	329	58584118	-	XOO4495	-	hypothetical protein
4017	 65.89	0	4793687..4794592	-	301	58584119	-	XOO4496	-	acetyltransferase
4018	 65.27	0	4794610..4795038	-	142	122879359	-	XOO4497	-	hypothetical protein
4019	 64.58	0	4795316..4797331	-	671	58584121	cls	XOO4498	-	cardiolipin synthase
4020	 60.38	0	4797328..4797900	-	190	58584122	-	XOO4499	-	hypothetical protein
4021	 70.13	+1	4797904..4798365	-	153	58584123	-	XOO4500	-	hypothetical protein
4022	 65.04	0	4798396..4799196	-	266	58584124	parA	XOO4501	-	partition protein
4023	 63.51	0	4799381..4800298	-	305	58584125	-	XOO4502	-	hypothetical protein
4024	 69.52	+1	4800560..4800769	-	69	58584126	-	XOO4503	-	hypothetical protein
4025	 62.76	0	4800833..4801216	-	127	58584127	-	XOO4504	-	hypothetical protein
4026	 64.64	0	4801390..4805097	+	1235	122879360	iorA	XOO4505	-	indolepyruvate ferredoxin oxidoreductase
4027	 54.75	-2	4805240..4805860	+	206	58584129	-	XOO4506	-	transcriptional regulator
4028	 61.97	0	4805857..4807134	+	425	58584130	hipA	XOO4507	-	HipA
4029	 64.84	0	4807179..4808165	-	328	122879361	-	XOO4508	-	hypothetical protein
4030	 64.42	0	4808162..4809583	-	473	58584132	-	XOO4509	-	hypothetical protein
4031	 65.74	0	4809517..4810698	+	393	58584133	-	XOO4510	-	hypothetical protein
4032	 64.36	0	4810985..4812457	-	490	58584134	yehZ	XOO4511	-	ABC transporter amino acid permease
4033	 66.16	0	4812454..4813236	-	260	58584135	yehX	XOO4512	-	ABC transporter ATP-binding protein
4034	 63.39	0	4813240..4813605	-	121	58584136	-	XOO4513	-	hypothetical protein
4035	 64.01	0	4813625..4814830	-	401	122879362	-	XOO4514	-	fatty acid desaturase
4036	 66.21	0	4814963..4815835	+	290	58584138	ylmA	XOO4515	-	ABC transporter ATP-binding protein
4037	 68.55	+1	4816024..4817034	+	336	58584140	-	XOO4517	-	hypothetical protein
4038	 66.04	0	4817458..4818579	+	373	58584141	-	XOO4518	-	hypothetical protein
4039	 52.38	-2	4819091..4819195	-	34	58584142	fpvA	XOO4519	-	ferripyoverdine receptor
4040	 63.48	0	4819207..4819896	+	229	58584143	-	XOO4520	-	transposase
4041	 60.42	0	4819851..4819946	+	31	121632140	-	XOO4949	-	hypothetical protein
4042	 60.61	0	4819943..4820041	+	32	58584144	-	XOO4521	-	transposase
4043	 65.93	0	4820090..4820224	+	44	58584145	-	XOO4522	-	transposase
4044	 59.47	-1	4822272..4822535	-	87	121632141	-	XOO4950	-	IS1404 transposase
4045	 58.73	-1	4822672..4823049	+	125	58584148	-	XOO4525	-	putative transposase
4046	 65.66	0	4823216..4823713	-	165	58584149	-	XOO4526	-	hypothetical protein
4047	 61.44	0	4823664..4824467	-	267	161898956	dkgB	XOO4527	-	2,5-diketo-D-gluconate reductase B
4048	 63.85	0	4824529..4825557	-	342	122879363	-	XOO4528	-	quinone oxidoreductase
4049	 63.07	0	4825696..4826667	-	323	58584152	mocA	XOO4529	-	oxidoreductase
4050	 62.54	0	4826786..4827754	+	322	58584153	-	XOO4530	-	hypothetical protein
4051	 67.00	0	4827817..4828419	+	200	58584154	-	XOO4531	-	pseudouridylate synthase
4052	 67.35	+1	4828742..4829182	-	146	58584155	-	XOO4532	-	hypothetical protein
4053	 70.43	+1	4829345..4831816	-	823	58584156	hrpB	XOO4533	-	ATP-dependent RNA helicase
4054	 64.77	0	4832535..4833008	-	157	58584157	-	XOO4534	-	hypothetical protein
4055	 66.74	0	4833321..4834640	-	439	58584158	-	XOO4535	-	RTS beta protein
4056	 63.17	0	4835164..4836021	-	285	58584159	-	XOO4536	-	2-hydroxyhepta-2,4-diene-1,7-dioateisomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase
4057	 65.24	0	4836192..4836962	-	256	58584160	ucpA	XOO4537	-	oxidoreductase
4058	 67.24	0	4836959..4837831	-	290	58584161	-	XOO4538	-	hypothetical protein
4059	 69.61	+1	4837828..4838949	-	373	58584162	-	XOO4539	-	oxidoreductase
4060	 66.03	0	4839151..4840248	+	365	58584163	-	XOO4540	-	xylosidase
4061	 63.89	0	4840758..4840937	-	59	121632142	-	XOO4951	-	hypothetical protein
4062	 62.36	0	4841501..4842406	-	301	58584166	tcsR	XOO4543	-	two-component system regulatory protein
4063	 64.42	0	4842431..4844521	-	696	58584167	acs	XOO4544	-	acetyl-CoA synthetase
4064	 63.19	0	4844537..4845025	+	162	58584168	-	XOO4545	-	hypothetical protein
4065	 63.21	0	4845022..4846062	+	346	58584169	-	XOO4546	-	hypothetical protein
4066	 57.91	-1	4846113..4846466	+	117	58584170	-	XOO4547	-	hypothetical protein
4067	 63.48	0	4846463..4848190	+	575	58584171	actP	XOO4548	-	acetate permease
4068	 68.52	+1	4848798..4849499	-	233	58584172	-	XOO4549	-	transcriptional regulator
4069	 64.36	0	4849856..4850635	+	259	58584173	xthA1	XOO4550	-	exodeoxyribonuclease III
4070	 61.94	0	4850605..4851069	+	154	58584174	-	XOO4551	-	hypothetical protein
4071	 60.51	0	4851131..4851520	-	129	58584175	mltA	XOO4552	-	transglycosylase associated protein
4072	 69.18	+1	4851509..4852105	+	198	58584176	hetI	XOO4553	-	HetI
4073	 65.97	0	4852124..4853695	-	523	58584177	-	XOO4554	-	hypothetical protein
4074	 68.63	+1	4853872..4855500	-	542	122879364	phoD	XOO4555	-	alkaline phosphatase D
4075	 68.54	+1	4855723..4856361	+	212	122879365	gidB	XOO4556	-	glucose-inhibited division protein B
4076	 69.44	+1	4857430..4857789	+	119	58584180	-	XOO4557	-	hypothetical protein
4077	 49.40	-2	4858224..4858391	+	55	58584181	rpmG	XOO4558	-	50S ribosomal protein L33
4078	 57.91	-1	4858824..4859291	-	155	58584182	fldW	XOO4559	-	4-oxalomesaconate hydratase
4079	 63.19	0	4859288..4860523	-	411	58584183	-	XOO4560	-	transposase
4080	 67.14	0	4861395..4862450	-	351	122879366	fldA	XOO4563	-	hypothetical protein
4081	 68.90	+1	4862443..4863114	-	223	58584188	fldZ	XOO4565	-	hypothetical protein
4082	 69.04	+1	4863212..4864519	+	435	58584189	fldY	XOO4566	-	transcriptional regulator
4083	 65.19	0	4864536..4865954	+	472	58584190	cls	XOO4567	-	cardiolipin synthase
4084	 60.61	0	4866025..4866123	-	32	121632143	-	XOO4952	-	hypothetical protein
4085	 65.83	0	4866153..4866509	-	118	58584191	-	XOO4568	-	lactoylglutathione lyase and related lyase
4086	 68.32	+1	4866526..4867920	+	464	58584192	-	XOO4569	-	hypothetical protein
4087	 65.52	0	4868268..4870454	+	728	58584193	uvrD	XOO4570	-	DNA-dependent helicase II
4088	 62.51	0	4871393..4872451	-	352	58584194	-	XOO4571	-	transposase
4089	 65.96	0	4872576..4873991	-	471	122879367	yhdG	XOO4572	-	amino acid transporter
4090	 66.49	0	4874482..4876806	+	774	58584196	-	XOO4573	-	hypothetical protein
4091	 67.00	0	4876981..4877574	+	197	122879368	-	XOO4574	-	hypothetical protein
4092	 62.46	0	4877952..4878569	+	205	58584198	btuE	XOO4575	-	glutathione peroxidase
4093	 63.62	0	4878594..4879970	-	458	122879369	-	XOO4577	-	IS1478 transposase
4094	 54.81	-2	4880545..4880991	-	148	58584202	-	XOO4579	-	transposase
4095	 63.83	0	4881007..4882134	-	375	58584203	-	XOO4580	-	hypothetical protein
4096	 61.90	0	4882098..4882769	-	223	122879370	-	XOO4581	-	hypothetical protein
4097	 65.50	0	4882990..4884360	-	456	58584205	ompP1	XOO4582	-	outer membrane protein
4098	 66.53	0	4884508..4885239	+	243	58584206	-	XOO4583	-	hypothetical protein
4099	 59.06	-1	4885335..4885676	+	113	58584207	-	XOO4584	-	hypothetical protein
4100	 68.28	+1	4885676..4886668	+	330	58584208	serA	XOO4585	-	D-3-phosphoglycerate dehydrogenase
4101	 67.32	+1	4886975..4888513	-	512	58584209	ctp	XOO4586	-	carboxyl-terminal protease
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.