IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3968	 54.59	-2	4734186..4734632	+	148	58584066	-	XOO4443	-	transposase
3969	 65.86	0	4735104..4736093	+	329	58584068	-	XOO4445	-	hypothetical protein
3970	 63.28	0	4736159..4737280	-	373	58584069	-	XOO4446	-	hypothetical protein
3971	 68.58	+1	4737290..4738384	-	364	58584070	-	XOO4447	-	oxidoreductase
3972	 66.23	0	4738459..4739139	+	226	58584071	-	XOO4448	-	TetR family transcriptional regulator
3973	 59.12	-1	4739172..4739648	-	158	58584072	-	XOO4449	-	putative transposase
3974	 58.06	-1	4739614..4739985	-	123	58584073	-	XOO4450	-	putative transposase
3975	 62.11	0	4740036..4741418	+	460	58584074	-	XOO4451	-	putative ISXo8 transposase
3976	 63.05	0	4741509..4742477	+	322	58584075	-	XOO4452	-	hypothetical protein
3977	 64.12	0	4742580..4742933	-	117	58584076	-	XOO4453	-	hypothetical protein
3978	 63.37	0	4742924..4743529	-	201	58584077	-	XOO4454	-	hypothetical protein
3979	 63.40	0	4743944..4744402	+	152	58584078	-	XOO4455	-	MarR family transcriptional regulator
3980	 64.23	0	4744399..4744932	+	177	58584079	ohr	XOO4456	-	organic hydroperoxide resistance protein
3981	 66.67	0	4745181..4746044	-	287	58584080	-	XOO4457	-	hypothetical protein
3982	 62.71	0	4746283..4747218	+	311	122879355	-	XOO4458	-	putative transposase
3983	 63.37	0	4747674..4748915	-	413	58584082	-	XOO4459	-	ISxac1 transposase
3984	 59.78	-1	4749220..4749582	-	120	58584083	-	XOO4460	-	hypothetical protein
3985	 58.63	-1	4749648..4749896	+	82	58584084	-	XOO4461	-	DNA-binding protein
3986	 67.87	+1	4751654..4751986	-	110	121632138	-	XOO4946	-	hypothetical protein
3987	 66.46	0	4751979..4752455	-	158	58584085	-	XOO4462	-	hypothetical protein
3988	 65.52	0	4752458..4752892	-	144	58584086	-	XOO4463	-	hypothetical protein
3989	 60.36	0	4753590..4753922	+	110	58584087	-	XOO4464	-	hypothetical protein
3990	 51.52	-2	4754171..4754269	+	32	58584088	-	XOO4465	-	hypothetical protein
3991	 67.81	+1	4754372..4755766	-	464	122879356	-	XOO4466	-	hypothetical protein
3992	 66.32	0	4756704..4756994	-	96	58584090	vapI	XOO4467	-	virulence associated protein
3993	 60.28	-1	4757012..4757293	-	93	58584091	-	XOO4468	-	hypothetical protein
3994	 71.99	+2	4757388..4759697	-	769	58584092	recD	XOO4469	-	exodeoxyribonuclease V alpha chain
3995	 68.71	+1	4759834..4763934	-	1366	58584093	recB	XOO4470	-	exodeoxyribonuclease V beta chain
3996	 68.69	+1	4763904..4767410	-	1168	58584094	recC	XOO4471	-	exodeoxyribonuclease V gamma chain
3997	 59.10	-1	4767721..4770375	+	884	58584095	-	XOO4472	-	hypothetical protein
3998	 69.70	+1	4771430..4774426	-	998	58584098	-	XOO4475	-	hemagglutinin
3999	 54.17	-2	4774434..4774553	+	39	121632139	-	YXOOp17	-	hypothetical protein
4000	 65.02	0	4775117..4775662	+	181	58584100	-	XOO4477	-	microcystin dependent protein
4001	 67.23	0	4775731..4776258	+	175	122879357	-	XOO4476	-	microcystin dependent protein
4002	 65.36	0	4776317..4776853	+	178	58584101	-	XOO4478	-	microcystin dependent protein
4003	 62.77	0	4776881..4777906	+	341	58584102	-	XOO4479	-	transposase
4004	 60.51	0	4777919..4778194	+	91	58584103	-	XOO4480	-	putative transposase
4005	 65.32	0	4778189..4778929	-	246	58584104	sodC2	XOO4481	-	superoxide dismutase
4006	 70.30	+1	4778892..4779497	-	201	58584105	yojM	XOO4482	-	superoxide dismutase like protein
4007	 66.60	0	4779993..4781441	-	482	58584106	ntrC	XOO4483	-	two-component system regulatory protein
4008	 68.28	+1	4781413..4782468	-	351	58584107	ntrB	XOO4484	-	two-component system sensor protein
4009	 66.33	0	4782740..4784215	-	491	58584109	amtB	XOO4486	-	ammonium transporter
4010	 64.60	0	4784205..4784543	-	112	58584110	glnB	XOO4487	-	nitrogen regulatory protein P-II
4011	 61.56	0	4784821..4786230	-	469	58584111	glnA	XOO4488	-	glutamine synthetase
4012	 64.66	0	4786452..4787249	+	265	122879358	uppP	XOO4489	-	undecaprenyl pyrophosphate phosphatase
4013	 70.14	+1	4787386..4788192	+	268	58584113	-	XOO4490	-	hypothetical protein
4014	 65.20	0	4789346..4790095	-	249	58584116	-	XOO4493	-	hypothetical protein
4015	 70.09	+1	4790152..4792224	-	690	58584117	-	XOO4494	-	hypothetical protein
4016	 66.77	0	4792638..4793627	-	329	58584118	-	XOO4495	-	hypothetical protein
4017	 65.89	0	4793687..4794592	-	301	58584119	-	XOO4496	-	acetyltransferase
4018	 65.27	0	4794610..4795038	-	142	122879359	-	XOO4497	-	hypothetical protein
4019	 64.58	0	4795316..4797331	-	671	58584121	cls	XOO4498	-	cardiolipin synthase
4020	 60.38	0	4797328..4797900	-	190	58584122	-	XOO4499	-	hypothetical protein
4021	 70.13	+1	4797904..4798365	-	153	58584123	-	XOO4500	-	hypothetical protein
4022	 65.04	0	4798396..4799196	-	266	58584124	parA	XOO4501	-	partition protein
4023	 63.51	0	4799381..4800298	-	305	58584125	-	XOO4502	-	hypothetical protein
4024	 69.52	+1	4800560..4800769	-	69	58584126	-	XOO4503	-	hypothetical protein
4025	 62.76	0	4800833..4801216	-	127	58584127	-	XOO4504	-	hypothetical protein
4026	 64.64	0	4801390..4805097	+	1235	122879360	iorA	XOO4505	-	indolepyruvate ferredoxin oxidoreductase
4027	 54.75	-2	4805240..4805860	+	206	58584129	-	XOO4506	-	transcriptional regulator
4028	 61.97	0	4805857..4807134	+	425	58584130	hipA	XOO4507	-	HipA
4029	 64.84	0	4807179..4808165	-	328	122879361	-	XOO4508	-	hypothetical protein
4030	 64.42	0	4808162..4809583	-	473	58584132	-	XOO4509	-	hypothetical protein
4031	 65.74	0	4809517..4810698	+	393	58584133	-	XOO4510	-	hypothetical protein
4032	 64.36	0	4810985..4812457	-	490	58584134	yehZ	XOO4511	-	ABC transporter amino acid permease
4033	 66.16	0	4812454..4813236	-	260	58584135	yehX	XOO4512	-	ABC transporter ATP-binding protein
4034	 63.39	0	4813240..4813605	-	121	58584136	-	XOO4513	-	hypothetical protein
4035	 64.01	0	4813625..4814830	-	401	122879362	-	XOO4514	-	fatty acid desaturase
4036	 66.21	0	4814963..4815835	+	290	58584138	ylmA	XOO4515	-	ABC transporter ATP-binding protein
4037	 68.55	+1	4816024..4817034	+	336	58584140	-	XOO4517	-	hypothetical protein
4038	 66.04	0	4817458..4818579	+	373	58584141	-	XOO4518	-	hypothetical protein
4039	 52.38	-2	4819091..4819195	-	34	58584142	fpvA	XOO4519	-	ferripyoverdine receptor
4040	 63.48	0	4819207..4819896	+	229	58584143	-	XOO4520	-	transposase
4041	 60.42	0	4819851..4819946	+	31	121632140	-	XOO4949	-	hypothetical protein
4042	 60.61	0	4819943..4820041	+	32	58584144	-	XOO4521	-	transposase
4043	 65.93	0	4820090..4820224	+	44	58584145	-	XOO4522	-	transposase
4044	 59.47	-1	4822272..4822535	-	87	121632141	-	XOO4950	-	IS1404 transposase
4045	 58.73	-1	4822672..4823049	+	125	58584148	-	XOO4525	-	putative transposase
4046	 65.66	0	4823216..4823713	-	165	58584149	-	XOO4526	-	hypothetical protein
4047	 61.44	0	4823664..4824467	-	267	161898956	dkgB	XOO4527	-	2,5-diketo-D-gluconate reductase B
4048	 63.85	0	4824529..4825557	-	342	122879363	-	XOO4528	-	quinone oxidoreductase
4049	 63.07	0	4825696..4826667	-	323	58584152	mocA	XOO4529	-	oxidoreductase
4050	 62.54	0	4826786..4827754	+	322	58584153	-	XOO4530	-	hypothetical protein
4051	 67.00	0	4827817..4828419	+	200	58584154	-	XOO4531	-	pseudouridylate synthase
4052	 67.35	+1	4828742..4829182	-	146	58584155	-	XOO4532	-	hypothetical protein
4053	 70.43	+1	4829345..4831816	-	823	58584156	hrpB	XOO4533	-	ATP-dependent RNA helicase
4054	 64.77	0	4832535..4833008	-	157	58584157	-	XOO4534	-	hypothetical protein
4055	 66.74	0	4833321..4834640	-	439	58584158	-	XOO4535	-	RTS beta protein
4056	 63.17	0	4835164..4836021	-	285	58584159	-	XOO4536	-	2-hydroxyhepta-2,4-diene-1,7-dioateisomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase
4057	 65.24	0	4836192..4836962	-	256	58584160	ucpA	XOO4537	-	oxidoreductase
4058	 67.24	0	4836959..4837831	-	290	58584161	-	XOO4538	-	hypothetical protein
4059	 69.61	+1	4837828..4838949	-	373	58584162	-	XOO4539	-	oxidoreductase
4060	 66.03	0	4839151..4840248	+	365	58584163	-	XOO4540	-	xylosidase
4061	 63.89	0	4840758..4840937	-	59	121632142	-	XOO4951	-	hypothetical protein
4062	 62.36	0	4841501..4842406	-	301	58584166	tcsR	XOO4543	-	two-component system regulatory protein
4063	 64.42	0	4842431..4844521	-	696	58584167	acs	XOO4544	-	acetyl-CoA synthetase
4064	 63.19	0	4844537..4845025	+	162	58584168	-	XOO4545	-	hypothetical protein
4065	 63.21	0	4845022..4846062	+	346	58584169	-	XOO4546	-	hypothetical protein
4066	 57.91	-1	4846113..4846466	+	117	58584170	-	XOO4547	-	hypothetical protein
4067	 63.48	0	4846463..4848190	+	575	58584171	actP	XOO4548	-	acetate permease
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.