IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3913	 63.79	0	4657547..4658311	-	254	58584007	-	XOO4384	-	hypothetical protein
3914	 68.25	+1	4658805..4659119	-	104	58584008	-	XOO4385	-	hypothetical protein
3915	 64.80	0	4658965..4660035	-	356	58584009	-	XOO4386	-	hypothetical protein
3916	 63.52	0	4660151..4660753	+	200	58584010	-	XOO4387	-	cytochrome C5
3917	 65.94	0	4660830..4662743	+	637	58584011	-	XOO4388	-	nuclease
3918	 67.18	0	4662834..4663220	-	128	58584012	-	XOO4389	-	hypothetical protein
3919	 66.67	0	4663282..4664607	+	441	58584013	-	XOO4390	-	nitrile hydratase activator
3920	 60.43	0	4664722..4666035	-	437	122879348	-	XOO4391	-	hypothetical protein
3921	 64.60	0	4666134..4666859	-	241	58584015	-	XOO4392	-	integral membrane protein
3922	 65.41	0	4666866..4667738	+	290	58584016	-	XOO4393	-	hypothetical protein
3923	 63.93	0	4667778..4668911	+	377	58584017	-	XOO4394	-	ATPase
3924	 61.09	0	4670416..4673175	+	919	122879349	-	XOO4396	-	TonB-dependent receptor
3925	 65.79	0	4673428..4675029	-	533	58584020	-	XOO4397	-	hypothetical protein
3926	 64.97	0	4675029..4677266	-	745	58584021	glyS	XOO4398	-	glycyl-tRNA synthetase subunit beta
3927	 64.84	0	4677556..4678596	-	346	58584022	glyQ	XOO4399	-	glycyl-tRNA synthetase subunit alpha
3928	 67.44	+1	4678554..4680368	+	604	58584023	gspE	XOO4400	-	general secretory pathway related protein
3929	 66.39	0	4680754..4689579	-	2941	58584024	-	XOO4401	-	hypothetical protein
3930	 58.60	-1	4689663..4690034	+	123	58584025	-	XOO4402	-	putative transposase
3931	 58.91	-1	4690000..4690476	+	158	58584026	-	XOO4403	-	putative transposase
3932	 66.91	0	4690957..4691772	+	271	58584027	guaA	XOO4404	-	glutamine amidotransferase
3933	 67.22	0	4691832..4692731	+	299	122879350	-	XOO4405	-	hypothetical protein
3934	 62.83	0	4692883..4693638	-	251	58584029	tatC	XOO4406	-	sec-independent protein translocase
3935	 67.59	+1	4693635..4694282	-	215	58584030	tatB	XOO4407	-	sec-independent translocase
3936	 64.04	0	4694298..4694525	-	75	58584031	tatA	XOO4408	-	twin argininte translocase protein A
3937	 66.08	0	4694598..4695614	-	338	58584032	-	XOO4409	-	hypothetical protein
3938	 67.99	+1	4695637..4696620	+	327	58584033	hemH	XOO4410	-	ferrochelatase
3939	 68.94	+1	4696617..4696748	+	43	58584034	-	XOO4411	-	hydrolase
3940	 67.89	+1	4696739..4697473	+	244	58584035	-	XOO4412	-	hydrolase
3941	 58.82	-1	4697554..4698012	+	152	58584036	-	XOO4413	-	hypothetical protein
3942	 65.68	0	4698283..4699089	-	268	58584037	-	XOO4414	-	hypothetical protein
3943	 62.80	0	4699695..4700600	-	301	58584038	rdgC	XOO4415	-	recombination associated protein
3944	 66.78	0	4700664..4701581	-	305	58584039	-	XOO4416	-	hypothetical protein
3945	 62.03	0	4702185..4703522	+	445	122879351	xylA	XOO4417	-	xylose isomerase
3946	 64.73	0	4703748..4704830	-	360	122879352	salR	XOO4418	-	sal operon transcriptional repressor
3947	 63.60	0	4704970..4707186	+	738	58584042	aguA	XOO4419	-	alpha-glucuronidase
3948	 66.33	0	4707048..4709147	+	699	58584043	-	XOO4420	-	sialic acid-specific 9-O-acetylesterase
3949	 63.92	0	4709072..4710418	+	448	58584044	rspA	XOO4421	-	starvation sensing protein
3950	 64.79	0	4710418..4712118	+	566	122879353	xylB	XOO4422	-	xylosidase; arabinosidase
3951	 66.63	0	4712121..4714835	+	904	58584046	-	XOO4423	-	glucan 1,4-beta-glucosidase
3952	 64.97	0	4715058..4716530	+	490	58584047	mtlD	XOO4424	-	mannitol dehydrogenase
3953	 62.14	0	4716756..4717064	-	102	58584048	-	XOO4425	-	bleomycin resistance protein
3954	 59.09	-1	4717508..4718563	-	351	58584049	-	XOO4426	-	hypothetical protein
3955	 63.99	0	4718791..4720209	-	472	161898957	hrmI	XOO4427	-	glucuronate isomerase
3956	 61.35	0	4720250..4721227	-	325	58584051	-	XOO4428	-	secreted xylanase
3957	 63.15	0	4721645..4722526	-	293	122879354	-	XOO4429	-	putative xylanase
3958	 64.29	0	4722645..4723904	-	419	58584053	exuT	XOO4430	-	hexuranate transporter
3959	 63.33	0	4724372..4727341	+	989	58584054	cirA	XOO4431	-	TonB-dependent receptor
3960	 61.64	0	4727338..4728927	+	529	58584055	xylP	XOO4432	-	transport protein
3961	 63.67	0	4728959..4729993	+	344	58584056	xsa	XOO4433	-	xylosidase; arabinosidase
3962	 56.37	-2	4730359..4730766	+	135	58584057	-	XOO4434	-	putative transposase
3963	 63.22	0	4731671..4731931	+	86	58584061	blc	XOO4438	-	outer membrane lipoprotein Blc
3964	 64.41	0	4732086..4732262	-	58	58584062	-	XOO4439	-	hypothetical protein
3965	 63.64	0	4732465..4733025	+	186	58584063	-	XOO4440	-	transposase
3966	 62.44	0	4733022..4733471	+	149	58584064	-	XOO4441	-	transposase
3967	 65.13	0	4733716..4734105	+	129	58584065	-	XOO4442	-	hypothetical protein
3968	 54.59	-2	4734186..4734632	+	148	58584066	-	XOO4443	-	transposase
3969	 65.86	0	4735104..4736093	+	329	58584068	-	XOO4445	-	hypothetical protein
3970	 63.28	0	4736159..4737280	-	373	58584069	-	XOO4446	-	hypothetical protein
3971	 68.58	+1	4737290..4738384	-	364	58584070	-	XOO4447	-	oxidoreductase
3972	 66.23	0	4738459..4739139	+	226	58584071	-	XOO4448	-	TetR family transcriptional regulator
3973	 59.12	-1	4739172..4739648	-	158	58584072	-	XOO4449	-	putative transposase
3974	 58.06	-1	4739614..4739985	-	123	58584073	-	XOO4450	-	putative transposase
3975	 62.11	0	4740036..4741418	+	460	58584074	-	XOO4451	-	putative ISXo8 transposase
3976	 63.05	0	4741509..4742477	+	322	58584075	-	XOO4452	-	hypothetical protein
3977	 64.12	0	4742580..4742933	-	117	58584076	-	XOO4453	-	hypothetical protein
3978	 63.37	0	4742924..4743529	-	201	58584077	-	XOO4454	-	hypothetical protein
3979	 63.40	0	4743944..4744402	+	152	58584078	-	XOO4455	-	MarR family transcriptional regulator
3980	 64.23	0	4744399..4744932	+	177	58584079	ohr	XOO4456	-	organic hydroperoxide resistance protein
3981	 66.67	0	4745181..4746044	-	287	58584080	-	XOO4457	-	hypothetical protein
3982	 62.71	0	4746283..4747218	+	311	122879355	-	XOO4458	-	putative transposase
3983	 63.37	0	4747674..4748915	-	413	58584082	-	XOO4459	-	ISxac1 transposase
3984	 59.78	-1	4749220..4749582	-	120	58584083	-	XOO4460	-	hypothetical protein
3985	 58.63	-1	4749648..4749896	+	82	58584084	-	XOO4461	-	DNA-binding protein
3986	 67.87	+1	4751654..4751986	-	110	121632138	-	XOO4946	-	hypothetical protein
3987	 66.46	0	4751979..4752455	-	158	58584085	-	XOO4462	-	hypothetical protein
3988	 65.52	0	4752458..4752892	-	144	58584086	-	XOO4463	-	hypothetical protein
3989	 60.36	0	4753590..4753922	+	110	58584087	-	XOO4464	-	hypothetical protein
3990	 51.52	-2	4754171..4754269	+	32	58584088	-	XOO4465	-	hypothetical protein
3991	 67.81	+1	4754372..4755766	-	464	122879356	-	XOO4466	-	hypothetical protein
3992	 66.32	0	4756704..4756994	-	96	58584090	vapI	XOO4467	-	virulence associated protein
3993	 60.28	-1	4757012..4757293	-	93	58584091	-	XOO4468	-	hypothetical protein
3994	 71.99	+2	4757388..4759697	-	769	58584092	recD	XOO4469	-	exodeoxyribonuclease V alpha chain
3995	 68.71	+1	4759834..4763934	-	1366	58584093	recB	XOO4470	-	exodeoxyribonuclease V beta chain
3996	 68.69	+1	4763904..4767410	-	1168