IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3853	 66.95	0	4585076..4588210	+	1044	122879339	-	XOO4306	-	hypothetical protein
3854	 65.59	0	4588189..4588932	+	247	58583930	-	XOO4307	-	putative periplasmic protein
3855	 65.20	0	4589067..4589270	-	67	58583932	-	XOO4309	-	putative transposase
3856	 64.67	0	4590268..4590717	-	149	58583935	-	XOO4312	-	hypothetical protein
3857	 65.23	0	4593772..4594746	-	324	122879340	-	XOO4316	-	acyltransferase
3858	 67.36	+1	4594743..4595030	-	95	122879341	-	XOO4317	-	putative dehydratase
3859	 62.42	0	4595042..4595818	-	258	58583941	-	XOO4318	-	putative acetyl transferase
3860	 66.40	0	4595845..4596591	-	248	58583942	-	XOO4319	-	ketosynthase
3861	 61.48	0	4596566..4596835	-	89	122879342	-	XOO4320	-	acyl carrier protein
3862	 65.22	0	4597102..4598487	+	461	58583944	-	XOO4321	-	hydroxylase
3863	 67.67	+1	4598598..4599491	+	297	122879343	rapK	XOO4322	-	pteridine-dependent deoxygenase like protein
3864	 55.14	-2	4599737..4600699	-	320	58583946	-	XOO4323	-	5'-nucleotidase, putative
3865	 67.53	+1	4601149..4602654	-	501	58583947	-	XOO4324	-	AMP-ligase
3866	 65.48	0	4603163..4605601	+	812	58583948	-	XOO4325	-	dipeptidyl peptidase
3867	 66.94	0	4606046..4606765	+	239	122879344	-	XOO4326	-	hypothetical protein
3868	 63.30	0	4606762..4607355	+	197	58583950	-	XOO4327	-	hypothetical protein
3869	 64.58	0	4608449..4608880	-	143	58583951	-	XOO4328	-	hypothetical protein
3870	 68.37	+1	4609016..4609894	+	292	58583952	-	XOO4329	-	oxidoreductase
3871	 67.40	+1	4612318..4613274	+	318	161898958	kdgT	XOO4332	-	2-keto-3-deoxygluconate permease
3872	 61.13	0	4613481..4614509	-	342	58583956	metE	XOO4333	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
3873	 59.47	-1	4614537..4615703	-	388	58583957	-	XOO4334	-	hypothetical protein
3874	 64.34	0	4615663..4616265	-	200	58583958	sflA	XOO4335	-	NADH-dependent FMN reductase
3875	 64.89	0	4616519..4617361	+	280	58583959	metR	XOO4336	-	MetE/MetH family transcriptional regulator
3876	 59.16	-1	4617361..4618026	+	221	58583960	-	XOO4337	-	hypothetical protein
3877	 63.68	0	4618245..4619180	+	311	58583961	metF	XOO4338	-	5,10-methylenetetrahydrofolate reductase
3878	 70.59	+1	4619430..4619837	+	135	58583963	smeS	XOO4340	-	two-component system sensor protein
3879	 70.03	+1	4619834..4620577	+	247	58583964	smeR	XOO4341	-	two-component system regulatory protein
3880	 63.79	0	4620656..4621525	-	289	58583965	purU	XOO4342	-	formyltetrahydrofolate deformylase
3881	 65.93	0	4621687..4622229	-	180	58583967	-	XOO4344	-	hypothetical protein
3882	 68.03	+1	4622470..4623348	-	292	122879345	-	XOO4345	-	dehydrogenase
3883	 65.15	0	4623386..4624504	-	372	58583969	frp	XOO4346	-	FMN oxidoreductase
3884	 67.12	0	4624563..4625444	-	293	122879346	-	XOO4347	-	NAD-dependent deacetylase
3885	 64.25	0	4625876..4626082	+	68	58583971	-	XOO4348	-	MerR family transcriptional regulator
3886	 66.95	0	4626338..4627735	-	465	58583972	ynfM	XOO4349	-	MFS transporter
3887	 68.02	+1	4627721..4628608	+	295	58583973	-	XOO4350	-	LysR family transcriptional regulator
3888	 65.25	0	4629060..4629413	+	117	58583974	-	XOO4351	-	hypothetical protein
3889	 66.67	0	4629478..4630488	-	336	58583976	mttC	XOO4353	-	type V secretory pathway protein
3890	 58.78	-1	4630664..4631170	+	168	58583977	gvpU	XOO4354	-	gas vesicle protein
3891	 64.99	0	4631349..4633856	-	835	122879347	-	XOO4355	-	hypothetical protein
3892	 60.32	0	4633968..4634282	-	104	58583979	-	XOO4356	-	alpha/beta superfamily hydrolase/acyltransferase
3893	 62.93	0	4634359..4635375	-	338	58583980	-	XOO4357	-	transposase
3894	 60.80	0	4635425..4635850	+	141	58583981	-	XOO4358	-	LysR family transcriptional regulator
3895	 63.08	0	4635902..4636933	+	343	58583982	-	XOO4359	-	putative transposase
3896	 67.62	+1	4638294..4639550	+	418	58583985	-	XOO4362	-	serine-pyruvate aminotransferase
3897	 67.56	+1	4639547..4640437	+	296	58583986	-	XOO4363	-	hypothetical protein
3898	 63.23	0	4642173..4643162	-	329	58583989	-	XOO4366	-	putative ISXo8 transposase
3899	 63.54	0	4643756..4644841	-	361	58583990	-	XOO4367	-	ISxac1 transposase
3900	 62.84	0	4644820..4645341	-	173	58583991	-	XOO4368	-	IS1404 transposase
3901	 60.95	0	4645808..4645912	-	34	58583994	-	XOO4371	-	IS1404 transposase
3902	 59.65	-1	4646043..4646156	+	37	58583995	-	XOO4372	-	putative transposase
3903	 61.35	0	4646297..4646992	-	231	58583996	-	XOO4373	-	hypothetical protein
3904	 59.78	-1	4646987..4647436	+	149	58583997	tnpA	XOO4374	-	transposase
3905	 57.83	-1	4647467..4648009	+	180	58583998	-	XOO4375	-	IS30 family transposase
3906	 62.88	0	4648296..4650380	-	694	58583999	-	XOO4376	-	dipeptidyl anminopeptidase
3907	 65.83	0	4650480..4652507	-	675	58584000	accC	XOO4377	-	biotin carboxylase
3908	 62.94	0	4652750..4654360	-	536	58584001	accD	XOO4378	-	acyl-CoA carboxyltransferase beta chain
3909	 64.78	0	4654371..4655534	-	387	58584002	acdA	XOO4379	-	acyl-CoA dehydrogenase
3910	 67.25	0	4655774..4656283	+	169	58584003	-	XOO4380	-	AcrR family transcriptional regulator
3911	 66.96	0	4656845..4657180	-	111	58584005	-	XOO4382	-	hypothetical protein
3912	 65.38	0	4657177..4657488	-	103	58584006	-	XOO4383	-	hypothetical protein
3913	 63.79	0	4657547..4658311	-	254	58584007	-	XOO4384	-	hypothetical protein
3914	 68.25	+1	4658805..4659119	-	104	58584008	-	XOO4385	-	hypothetical protein
3915	 64.80	0	4658965..4660035	-	356	58584009	-	XOO4386	-	hypothetical protein
3916	 63.52	0	4660151..4660753	+	200	58584010	-	XOO4387	-	cytochrome C5
3917	 65.94	0	4660830..4662743	+	637	58584011	-	XOO4388	-	nuclease
3918	 67.18	0	4662834..4663220	-	128	58584012	-	XOO4389	-	hypothetical protein
3919	 66.67	0	4663282..4664607	+	441	58584013	-	XOO4390	-	nitrile hydratase activator
3920	 60.43	0	4664722..4666035	-	437	122879348	-	XOO4391	-	hypothetical protein
3921	 64.60	0	4666134..4666859	-	241	58584015	-	XOO4392	-	integral membrane protein
3922	 65.41	0	4666866..4667738	+	290	58584016	-	XOO4393	-	hypothetical protein
3923	 63.93	0	4667778..4668911	+	377	58584017	-	XOO4394	-	ATPase
3924	 61.09	0	4670416..4673175	+	919	122879349	-	XOO4396	-	TonB-dependent receptor
3925	 65.79	0	4673428..4675029	-	533	58584020	-	XOO4397	-	hypothetical protein
3926	 64.97	0	4675029..4677266	-	745	58584021	glyS	XOO4398	-	glycyl-tRNA synthetase subunit beta
3927	 64.84	0	4677556..4678596	-	346	58584022	glyQ	XOO4399	-	glycyl-tRNA synthetase subunit alpha
3928	 67.44	+1	4678554..4680368	+	604	58584023	gspE	XOO4400	-	general secretory pathway related protein
3929	 66.39	0	4680754..4689579	-	2941	58584024	-	XOO4401	-	hypothetical protein
3930	 58.60	-1	4689663..4690034	+	123	58584025	-	XOO4402	-	putative transposase
3931	 58.91	-1	4690000..4690476	+	158	58584026	-	XOO4403	-	putative transposase
3932	 66.91	0	4690957..4691772	+	271	58584027	guaA	XOO4404	-	glutamine amidotransferase
3933	 67.22	0	4691832..4692731	+	299	122879350	-	XOO4405	-	hypothetical protein
3934	 62.83	0	4692883..4693638	-	251	58584029	tatC	XOO4406	-	sec-independent protein translocase
3935	 67.59	+1	4693635..4694282	-	215	58584030	tatB	XOO4407	-	sec-independent translocase
3936	 64.04	0	4694298..4694525	-	75