IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
316	 56.91	-1	383387..384175	-	262	58580001	-	XOO0378	-	hypothetical protein
317	 65.07	0	384139..384951	-	270	58580002	yadH	XOO0379	-	permease
318	 65.56	0	384948..385943	-	331	58580004	yadG	XOO0381	-	ABC transporter ATP-binding protein
319	 66.67	0	386046..386807	+	253	122879014	poxF	XOO0382	-	phenol hydroxylase
320	 65.77	0	386892..387893	-	333	58580006	czcD	XOO0383	-	heavy metal transporter
321	 59.59	-1	387893..388231	+	112	58580007	-	XOO0384	-	hypothetical protein
322	 60.78	0	388412..388513	+	33	121632026	-	XOO4711	-	hypothetical protein
323	 63.13	0	388711..389304	+	197	58580008	-	XOO0385	-	hypothetical protein
324	 58.71	-1	389301..389501	+	66	58580009	-	XOO0386	-	transcriptional regulator
325	 67.24	0	389598..391163	+	521	58580010	-	XOO0387	-	cysteine proteinase
326	 63.30	0	391081..391941	+	286	58580011	natA	XOO0388	-	sodium ABC transporter ATP-binding protein
327	 63.15	0	391938..393131	+	397	58580012	natB	XOO0389	-	ABC transporter sodium permease
328	 68.72	+1	393541..394563	-	340	58580013	-	XOO0390	-	TonB-like protein
329	 67.56	+1	394703..396274	-	523	58580014	prnA	XOO0391	-	tryptophan halogenase
330	 68.24	+1	396279..397292	-	337	58580015	-	XOO0392	-	Pass1-related protein
331	 62.28	0	397282..398034	-	250	58580016	sapC	XOO0393	-	SapC
332	 63.67	0	398167..401241	-	1024	58580017	iroN	XOO0394	-	TonB-dependent receptor
333	 54.59	-2	401328..401774	+	148	58580018	-	XOO0395	-	transposase
334	 63.04	0	402387..403076	+	229	58580020	gst	XOO0397	-	glutathione S-transferase
335	 64.61	0	403501..405738	+	745	58580021	-	XOO0398	-	dipeptidyl peptidase IV
336	 66.02	0	405890..407737	+	615	58580022	-	XOO0399	-	hypothetical protein
337	 70.81	+2	407837..408295	-	152	58580023	-	XOO0400	-	hypothetical protein
338	 64.45	0	408960..409952	+	330	122879015	hemB	XOO0402	-	delta-aminolevulinic acid dehydratase
339	 70.34	+1	410140..410574	-	144	58580026	-	XOO0403	-	hypothetical protein
340	 71.17	+2	410644..411132	-	162	58580027	-	XOO0404	-	hypothetical protein
341	 67.86	+1	411213..412136	+	307	58580028	-	XOO0405	-	LysR family transcriptional regulator
342	 62.83	0	412264..413070	-	268	58580029	-	XOO0406	-	endonuclease
343	 66.43	0	413250..415784	+	844	122879016	piuB	XOO0407	-	iron-uptake factor
344	 58.97	-1	415958..416347	+	129	58580031	-	XOO0408	-	hypothetical protein
345	 68.21	+1	416407..417315	-	302	58580032	-	XOO0409	-	hypothetical protein
346	 67.84	+1	417341..418192	+	283	121632027	aroE	XOO4712	-	shikimate 5-dehydrogenase
347	 65.91	0	418182..418580	+	132	58580033	-	XOO0410	-	hypothetical protein
348	 66.67	0	418615..418764	+	49	58580034	-	XOO0411	-	hypothetical protein
349	 64.74	0	419042..421174	+	710	122879017	dinG	XOO0412	-	ATP-dependent DNA helicase DinG
350	 60.36	0	421382..421714	+	110	58580036	-	XOO0413	-	membrane-fusion protein
351	 62.95	0	421746..422579	+	277	58580037	-	XOO0414	-	transposase
352	 65.19	0	422628..422762	+	44	58580038	-	XOO0415	-	transposase
353	 56.69	-2	422925..423395	+	156	58580039	-	XOO0416	-	membrane-fusion protein
354	 61.42	0	424086..425609	+	507	58580040	catB	XOO0417	-	catalase precursor
355	 64.24	0	425668..426243	+	191	58580041	ankB	XOO0418	-	ankyrin-like protein
356	 62.67	0	426964..427188	+	74	58580042	-	XOO0419	-	hypothetical protein
357	 65.22	0	427249..427455	-	68	58580043	-	XOO0420	-	hypothetical protein
358	 67.66	+1	427652..428656	+	334	58580044	-	XOO0421	-	tRNA-dihydrouridine synthase A
359	 66.94	0	428936..429295	+	119	58580045	-	XOO0422	-	hypothetical protein
360	 59.36	-1	429367..430050	+	227	58580046	phoP	XOO0423	-	two-component system regulatory protein
361	 63.84	0	430080..431495	+	471	58580047	phoQ	XOO0424	-	two-component system sensor protein
362	 63.73	0	431574..433205	+	543	58580048	-	XOO0425	-	hypothetical protein
363	 63.64	0	433256..434509	+	417	58580049	-	XOO0426	-	hypothetical protein
364	 61.48	0	434662..435297	-	211	58580050	-	XOO0427	-	hypothetical protein
365	 69.98	+1	436095..437060	+	321	161899023	birA	XOO0428	-	biotin--protein ligase
366	 71.33	+2	437057..437785	+	242	58580052	baf	XOO0429	-	pantothenate kinase
367	 69.46	+1	437795..438724	+	309	122879018	-	XOO0430	-	hypothetical protein
368	 69.59	+1	439528..440211	-	227	58580054	tdk	XOO0431	-	thymidylate kinase
369	 63.97	0	440691..440987	-	98	58580055	-	XOO0432	-	hypothetical protein
370	 62.50	0	440994..441233	-	79	58580056	-	XOO0433	-	hypothetical protein
371	 66.67	0	441230..441904	-	224	58580057	-	XOO0434	-	hypothetical protein
372	 66.96	0	442136..443149	+	337	58580058	argI	XOO0435	-	arginase
373	 61.48	0	443473..443607	+	44	121632028	-	XOO4713	-	hypothetical protein
374	 57.54	-1	443776..444060	+	94	58580059	-	XOO0436	-	hypothetical protein
375	 62.33	0	444229..445518	+	429	58580060	trpS	XOO0437	-	tryptophanyl-tRNA synthetase
376	 63.93	0	445571..446593	+	340	58580061	-	XOO0438	-	beta-lactamase related protein
377	 65.24	0	447032..448708	+	558	122879019	-	XOO0439	-	peptidase
378	 67.55	+1	449209..449661	-	150	58580063	-	XOO0440	-	hypothetical protein
379	 68.06	+1	449981..450628	+	215	58580065	-	XOO0442	-	integral membrane protein
380	 66.45	0	450625..451533	+	302	58580066	-	XOO0443	-	hypothetical protein
381	 65.88	0	451613..452749	-	378	58580067	-	XOO0444	-	hypothetical protein
382	 66.67	0	452907..453221	-	104	58580068	-	XOO0445	-	hypothetical protein
383	 65.36	0	453429..453962	-	177	58580069	yodB	XOO0446	-	cytochrome B561
384	 67.86	+1	453959..455050	-	363	58580070	srpA	XOO0447	-	catalase
385	 66.28	0	455215..455730	+	171	58580071	prtI	XOO0448	-	ECF sigma factor
386	 67.73	+1	455727..456479	+	250	58580072	prtR	XOO0449	-	transmembrane regulator protein prtR
387	 67.69	+1	456535..457905	-	456	58580073	-	XOO0450	-	leucine aminopeptidase
388	 66.67	0	457946..458683	-	245	58580074	-	XOO0451	-	hydrolase
389	 62.91	0	458815..459984	-	389	58580075	yhhT	XOO0452	-	transport protein
390	 67.00	0	461057..461956	+	299	58580076	ubiA	XOO0453	-	4-hydroxybenzoate octaprenyltransferase
391	 69.13	+1	462236..462967	-	243	58580077	comF	XOO0454	-	competence protein F
392	 65.99	0	463011..464045	+	344	122879020	bioB	XOO0455	-	biotin synthase
393	 67.79	+1	464002..465342	+	446	58580079	bioF	XOO0456	-	8-amino-7-oxononanoate synthase
394	 62.37	0	465695..466741	+	348	58580080	-	XOO0457	-	putative transposase
395	 63.91	0	466981..467742	+	253	58580082	fabG	XOO0459	-	3-ketoacyl-(acyl-carrier-protein) reductase
396	 62.72	0	468271..469893	-	540	58580083	-	XOO0460	-	halogenase
397	 67.76	+1	469890..470711	-	273	58580084	-	XOO0461	-	dolichyl-phosphate mannose synthase related protein
398	 71.58	+2	470708..471481	-	257	58580085	-	XOO0462	-	hypothetical protein
399	 69.19	+1	471481..472707	-	408	58580086	fabF	XOO0463	-	3-oxoacyl-(acyl carrier protein) synthase I
400	 62.27	0	472728..473159	+	143	58580087	-	XOO0464	-	hypothetical protein
401	 63.31	0	476843..478690	+	615	58580089	-	XOO0466	-	hypothetical protein
402	 63.33	0	478687..480483	+	598	58580090	zwf	XOO0467	-	glucose-6-phosphate 1-dehydrogenase
403	 63.53	0	481071..482282	+	403	58580091	-	XOO0468	-	putative ISXo8 transposase
404	 65.40	0	482382..484199	-	605	58580092	kefC	XOO0469	-	glutathione-regulated potassium-efflux system protein
405	 65.28	0	484877..486244	+	455	58580093	mgtE	XOO0470	-	Mg++ transporter
406	 65.37	0	486316..486930	+	204	122879021	-	XOO0471	-	hypothetical protein
407	 69.32	+1	487217..489925	+	902	58580095	-	XOO0472	-	hypothetical protein
408	 63.22	0	490032..491075	+	347	122879022	-	XOO0473	-	integral membrane protein
409	 62.87	0	491672..494170	+	832	161899022	nrdA	XOO0474	-	ribonucleotide-diphosphate reductase subunit alpha
410	 57.47	-1	494347..495390	+	347	58580098	nrdF	XOO0475	-	ribonucleotide-diphosphate reductase subunit beta
411	 63.95	0	496273..496788	+	171	58580099	-	XOO0476	-	flavodoxin
412	 65.44	0	496760..497086	+	108	58580100	trxA	XOO0477	-	thioredoxin
413	 59.09	-1	497300..497563	+	87	121632029	-	XOO4716	-	IS1404 transposase
414	 63.83	0	497416..498402	+	328	58580101	-	XOO0478	-	IS1404 transposase
415	 72.10	+2	498642..498917	+	91	58580103	gctB	XOO0480	-	glutaconate CoA transferase subunit B
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.