IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3510	 62.33	0	4192750..4193718	-	322	58583548	-	XOO3925	-	transposase
3511	 57.54	-1	4193909..4194193	+	94	58583549	-	XOO3926	-	IS1404 transposase
3512	 63.43	0	4194197..4195432	-	411	58583551	-	XOO3928	-	transposase
3513	 64.98	0	4196881..4198065	-	394	122879301	-	XOO3931	-	hypothetical protein
3514	 68.02	+1	4198133..4198870	+	245	58583555	ptr1	XOO3932	-	pteridine reductase
3515	 65.31	0	4199039..4199554	-	171	58583556	folK	XOO3933	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
3516	 63.94	0	4199646..4201148	-	500	58583557	-	XOO3934	-	histidine kinase-response regulator hybrid protein
3517	 63.49	0	4201152..4201592	-	146	58583558	-	XOO3935	-	two-component system regulatory protein
3518	 63.98	0	4201589..4203448	-	619	58583559	-	XOO3936	-	two-component system sensor protein
3519	 60.75	0	4203686..4204057	-	123	58583560	-	XOO3937	-	hypothetical protein
3520	 65.62	0	4204208..4205260	+	350	58583561	ydgJ	XOO3938	-	oxidoreductase
3521	 64.12	0	4205600..4206541	-	313	58583562	gndA	XOO3939	-	6-phosphogluconate dehydrogenase-like protein
3522	 64.90	0	4206562..4207977	-	471	58583563	-	XOO3940	-	hypothetical protein
3523	 62.44	0	4208071..4208520	-	149	58583564	-	XOO3941	-	hypothetical protein
3524	 65.91	0	4208576..4209373	-	265	122879302	-	XOO3942	-	hypothetical protein
3525	 68.10	+1	4209412..4209690	-	92	58583566	-	XOO3943	-	hypothetical protein
3526	 67.96	+1	4211255..4211563	-	102	58583569	-	XOO3946	-	hypothetical protein
3527	 63.59	0	4211586..4213046	-	486	58583570	pbeF	XOO3947	-	putative nicotinate phosphoribosyltransferase
3528	 63.16	0	4213112..4214167	-	351	58583571	-	XOO3948	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
3529	 61.13	0	4214166..4215194	+	342	58583572	-	XOO3949	-	hypothetical protein
3530	 63.05	0	4215486..4217669	-	727	58583573	prc	XOO3950	-	tail-specific protease
3531	 61.16	0	4219259..4220839	-	526	122879303	xphIM	XOO3951	-	methyltransferase homolog M.XphI
3532	 64.30	0	4221315..4222328	-	337	58583575	lipA	XOO3952	-	lipoyl synthase
3533	 65.09	0	4222343..4223041	-	232	58583576	lipB	XOO3953	-	lipoyltransferase
3534	 64.83	0	4223434..4224087	-	217	122879304	-	XOO3955	-	hypothetical protein
3535	 64.43	0	4224373..4225578	-	401	58583579	dacC	XOO3956	-	penicillin-binding protein 6
3536	 67.37	+1	4226079..4227494	-	471	58583580	rlpA	XOO3957	-	rare lipoprotein A
3537	 65.44	0	4227491..4228630	-	379	58583581	mltB	XOO3958	-	membrane-bound lytic transglycosylase
3538	 70.10	+1	4234117..4236273	-	718	58583587	-	XOO3964	-	hypothetical protein
3539	 59.26	-1	4236249..4236788	-	179	122879305	-	XOO3965	-	hypothetical protein
3540	 65.31	0	4238868..4240043	-	391	58583589	-	XOO3966	-	hypothetical protein
3541	 64.70	0	4240612..4241730	-	372	58583590	mrdB	XOO3967	-	rod shape-determining protein
3542	 67.30	0	4241727..4243787	-	686	58583591	mrdA	XOO3968	-	penicillin-binding protein 2
3543	 65.64	0	4243791..4244276	-	161	58583592	mreD	XOO3969	-	rod shape-determining protein
3544	 64.58	0	4245792..4246943	-	383	58583593	mreB	XOO3970	-	rod shape-determining protein
3545	 63.67	0	4247114..4248046	+	310	122879306	-	XOO3971	-	sugar kinase
3546	 57.68	-1	4249214..4249669	+	151	58583597	-	XOO3974	-	putative transposase
3547	 58.70	-1	4249635..4250111	+	158	58583598	-	XOO3975	-	putative transposase
3548	 66.43	0	4250170..4250598	-	142	58583599	-	XOO3976	-	hypothetical protein
3549	 59.70	-1	4250582..4250782	-	66	58583600	-	XOO3977	-	hypothetical protein
3550	 62.77	0	4250869..4251279	-	136	58583601	-	XOO3978	-	IS1478 transposase
3551	 63.60	0	4251252..4251707	-	151	58583602	codA	XOO3979	-	cytosine deaminase
3552	 65.49	0	4251704..4252297	-	197	58583603	-	XOO3980	-	hypothetical protein
3553	 63.11	0	4252574..4253305	-	243	58583605	tISRso5	XOO3982	-	ISRSO5-transposase protein
3554	 66.39	0	4253455..4254531	-	358	122879307	-	XOO3983	-	multidrug resistance efflux pump
3555	 61.42	0	4256237..4257037	+	266	58583610	ubiE	XOO3987	-	ubiquinone/menaquinone biosynthesis methyltransferase
3556	 64.39	0	4257135..4258100	+	321	58583611	-	XOO3988	-	response regulator
3557	 63.63	0	4258162..4260234	+	690	58583612	pepN	XOO3989	-	aminopeptidase
3558	 63.99	0	4260304..4261125	+	273	58583613	-	XOO3990	-	hypothetical protein
3559	 65.54	0	4261425..4262048	+	207	58583614	-	XOO3991	-	hypothetical protein
3560	 60.67	0	4262222..4263589	-	455	58583615	hslU	XOO3992	-	ATP-dependent protease ATP-binding subunit
3561	 63.04	0	4263700..4264251	-	183	122879308	hslV	XOO3993	-	ATP-dependent protease peptidase subunit
3562	 63.12	0	4264767..4265810	-	347	58583617	xerC	XOO3994	-	site-specific tyrosine recombinase XerC
3563	 64.46	0	4265884..4266564	-	226	58583619	-	XOO3996	-	hypothetical protein
3564	 67.13	0	4266552..4267406	-	284	161898962	dapF	XOO3997	-	diaminopimelate epimerase
3565	 66.67	0	4267690..4268124	-	144	58583621	-	XOO3998	-	hypothetical protein
3566	 61.06	0	4268464..4270674	-	736	58583622	ptrB	XOO3999	-	protease II; oligopeptidase B
3567	 63.47	0	4270687..4271907	+	406	58583623	aspC	XOO4000	-	hypothetical protein
3568	 53.46	-2	4271996..4272154	-	52	58583624	-	XOO4001	-	hypothetical protein
3569	 63.03	0	4272747..4274918	-	723	58583625	-	XOO4002	-	prolyl oligopeptidase
3570	 70.50	+1	4274908..4275246	-	112	58583626	-	XOO4003	-	hypothetical protein
3571	 62.98	0	4275607..4276176	+	189	122879309	-	XOO4004	-	outer membrane lipoprotein
3572	 63.25	0	4276285..4277250	-	321	58583628	-	XOO4005	-	hypothetical protein
3573	 63.92	0	4277809..4278609	+	266	58583629	-	XOO4006	-	hypothetical protein
3574	 68.63	+1	4279160..4280074	-	304	58583630	hemC	XOO4007	-	porphobilinogen deaminase
3575	 66.94	0	4280105..4280842	-	245	58583631	algR	XOO4008	-	two-component system regulatory protein
3576	 69.61	+1	4280873..4281925	-	350	58583632	algZ	XOO4009	-	two-component system sensor protein
3577	 68.31	+1	4281930..4282598	-	222	58583633	-	XOO4010	-	carboxylesterase
3578	 66.41	0	4282750..4284687	-	645	122879310	hrpM	XOO4011	-	glucosyltransferase MdoH
3579	 54.59	-2	4285387..4285833	+	148	58583635	-	XOO4012	-	transposase
3580	 65.09	0	4286491..4288140	-	549	58583638	-	XOO4015	-	aminopeptidase
3581	 64.97	0	4289531..4291060	-	509	58583641	ybaR	XOO4018	-	sulfate permease
3582	 61.15	0	4291226..4292674	+	482	122879311	engXCA	XOO4019	-	cellulase
3583	 65.79	0	4293156..4293383	+	75	58583643	tsr	XOO4020	-	chemotaxis protein
3584	 65.85	0	4293909..4296722	-	937	58583644	-	XOO4021	-	histidine kinase-response regulator hybrid protein
3585	 65.76	0	4296788..4299658	+	956	58583645	-	XOO4022	-	zinc protease
3586	 65.27	0	4300062..4301135	+	357	58583646	phS	XOO4023	-	histidine kinase-response regulator hybrid protein
3587	 66.49	0	4301174..4302310	-	378	58583647	-	XOO4024	-	hypothetical protein
3588	 54.81	-2	4302765..4303211	-	148	58583649	-	XOO4026	-	transposase
3589	 56.91	-1	4303858..4303980	-	40	58583650	-	XOO4027	-	endonuclease
3590	 69.13	+1	4304166..4305017	+	283	58583652	-	XOO4029	-	hypothetical protein
3591	 66.25	0	4305271..4306944	+	557	122879312	treA	XOO4030	-	trehalase
3592	 68.07	+1	4308656..4308940	+	94	58583654	-	X