IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3449	 67.30	0	4112484..4112960	-	158	58583475	ribH	XOO3852	-	riboflavin synthase subunit beta
3450	 66.49	0	4113262..4114401	-	379	58583476	ribA	XOO3853	-	GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
3451	 63.85	0	4114398..4115000	-	200	122879294	ribE	XOO3854	-	riboflavin synthase subunit alpha
3452	 63.94	0	4115561..4116184	+	207	58583478	-	XOO3855	-	hypothetical protein
3453	 66.04	0	4116240..4117349	-	369	58583479	ribD	XOO3856	-	riboflavin-specific deaminase; 5-amino-6-uracil reductase
3454	 62.96	0	4117346..4117831	-	161	58583480	-	XOO3857	-	acetyltransferase
3455	 61.71	0	4117828..4118352	-	174	122879295	-	XOO3858	-	transcriptional regulator NrdR
3456	 64.31	0	4118352..4118861	-	169	58583482	-	XOO3859	-	hypothetical protein
3457	 63.48	0	4118881..4120134	-	417	58583483	glyA	XOO3860	-	serine hydroxymethyltransferase
3458	 62.68	0	4120320..4122902	-	860	58583484	-	XOO3861	-	TonB-dependent receptor, putative
3459	 64.75	0	4123346..4123867	-	173	58583485	-	XOO3862	-	hypothetical protein
3460	 61.85	0	4123827..4125755	+	642	58583486	yjjK	XOO3863	-	putative ABC transporter ATP-binding protein
3461	 64.93	0	4125930..4126274	+	114	58583487	-	XOO3864	-	hypothetical protein
3462	 61.62	0	4126271..4126627	-	118	58583488	sll7047	XOO3865	-	hypothetical protein
3463	 61.37	0	4127118..4127948	-	276	58583489	-	XOO3866	-	esterase
3464	 63.47	0	4128650..4129807	-	385	58583490	-	XOO3867	-	alcohol dehydrogenase C
3465	 65.58	0	4129824..4130099	-	91	58583491	-	XOO3868	-	hypothetical protein
3466	 64.94	0	4131221..4132321	-	366	58583492	-	XOO3869	-	hypothetical protein
3467	 64.42	0	4132334..4133179	+	281	58583493	-	XOO3870	-	two-component system regulatory protein
3468	 67.00	0	4133176..4134675	+	499	58583494	-	XOO3871	-	two-component system sensor protein
3469	 64.55	0	4134708..4135652	-	314	58583495	-	XOO3872	-	hypothetical protein
3470	 61.02	0	4137150..4137893	-	247	58583496	gsh1	XOO3873	-	glutamate-cysteine ligase precursor
3471	 62.26	0	4138003..4139385	-	460	122879296	-	XOO3874	-	putative ISXo8 transposase
3472	 66.39	0	4139977..4140699	+	240	122879297	-	XOO3875	-	two-component system sensor protein
3473	 65.13	0	4140886..4142250	-	454	58583500	gsh1	XOO3877	-	glutamate-cysteine ligase precursor
3474	 68.46	+1	4142271..4143161	+	296	58583501	dr161	XOO3878	-	nodulin 21-related protein
3475	 59.20	-1	4143299..4143646	-	115	58583502	-	XOO3879	-	putative transposase
3476	 58.28	-1	4143612..4144064	-	150	58583503	-	XOO3880	-	putative transposase
3477	 66.15	0	4144108..4144884	-	258	58583504	yihA	XOO3881	-	GTPase EngB
3478	 68.30	+1	4144876..4145673	+	265	58583505	cycA	XOO3882	-	cytochrome C4
3479	 66.18	0	4146509..4147324	+	271	122879298	dsbA	XOO3884	-	thiol:disulfide interchange protein
3480	 65.10	0	4147344..4148111	+	255	58583508	-	XOO3885	-	hypothetical protein
3481	 61.82	0	4148695..4148859	+	54	58583510	betT	XOO3887	-	high-affinity choline transport
3482	 62.45	0	4148856..4149401	-	181	58583511	-	XOO3888	-	IS1404 transposase
3483	 58.89	-1	4149696..4149965	-	89	121632130	-	YXOOp13	-	IS1404 transposase
3484	 58.16	-1	4150738..4151031	+	97	58583514	tnp	XOO3891	-	transposase
3485	 62.06	0	4151831..4153177	-	448	58583515	-	XOO3892	-	ISxac1 transposase
3486	 55.91	-2	4153288..4155081	+	597	58583516	metC	XOO3893	-	putative cystathionine gamma-synthase protein
3487	 61.40	0	4155294..4156262	+	322	58583517	-	XOO3894	-	putative transposase
3488	 61.11	0	4156997..4157266	+	89	58583518	tnp	XOO3895	-	transposase
3489	 58.87	-1	4158644..4158874	-	76	58583521	-	XOO3898	-	putative transposase
3490	 61.93	0	4159073..4159621	+	182	58583522	-	XOO3899	-	putative ISXo8 transposase
3491	 63.99	0	4160649..4161881	+	410	122879299	cca	XOO3900	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
3492	 61.40	0	4164241..4165209	-	322	58583528	-	XOO3905	-	putative transposase
3493	 58.59	-1	4165901..4166692	-	263	58583530	fyuA	XOO3907	-	TonB-dependent receptor
3494	 58.95	-1	4166679..4167041	-	120	58583531	fyuA	XOO3908	-	TonB-dependent receptor
3495	 61.54	0	4167070..4168512	-	480	58583532	fyuA	XOO3909	-	TonB-dependent receptor
3496	 63.23	0	4168851..4169867	+	338	58583533	-	XOO3910	-	transposase
3497	 64.30	0	4171088..4173238	+	716	58583534	hmsH	XOO3911	-	HmsH
3498	 62.75	0	4173147..4175138	+	663	58583535	hmsF	XOO3912	-	HmsF
3499	 63.00	0	4175140..4176393	+	417	161898963	hmsR	XOO3913	-	N-glycosyltransferase PgaC
3500	 65.18	0	4176390..4176995	+	201	58583537	-	XOO3914	-	hypothetical protein
3501	 67.01	0	4177415..4178575	-	386	58583538	nagA	XOO3915	-	N-acetylglucosamine-6-phosphate deacetylase
3502	 65.99	0	4178572..4179600	-	342	58583540	glmS	XOO3917	-	glucosamine-fructose-6-phosphate aminotransferase
3503	 64.49	0	4179597..4180700	-	367	58583541	-	XOO3918	-	LacI family transcription regulator
3504	 61.82	0	4180714..4181991	-	425	58583542	gluP	XOO3919	-	glucose-galactose transporter
3505	 64.82	0	4182036..4182902	-	288	58583543	-	XOO3920	-	GntR family transcriptional regulator
3506	 64.37	0	4183018..4184106	-	362	58583544	-	XOO3921	-	hypothetical protein
3507	 64.99	0	4184318..4186579	-	753	58583545	-	XOO3922	-	N-acetylglucosaminidase
3508	 66.25	0	4186730..4189627	-	965	58583546	lacZ	XOO3923	-	truncated beta-galactosidase
3509	 61.09	0	4189778..4192468	-	896	122879300	iroN	XOO3924	-	TonB-dependent receptor
3510	 62.33	0	4192750..4193718	-	322	58583548	-	XOO3925	-	transposase
3511	 57.54	-1	4193909..4194193	+	94	58583549	-	XOO3926	-	IS1404 transposase
3512	 63.43	0	4194197..4195432	-	411	58583551	-	XOO3928	-	transposase
3513	 64.98	0	4196881..4198065	-	394	122879301	-	XOO3931	-	hypothetical protein
3514	 68.02	+1	4198133..4198870	+	245	58583555	ptr1	XOO3932	-	pteridine reductase
3515	 65.31	0	4199039..4199554	-	171	58583556	folK	XOO3933	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
3516	 63.94	0	4199646..4201148	-	500	58583557	-	XOO3934	-	histidine kinase-response regulator hybrid protein
3517	 63.49	0	4201152..4201592	-	146	58583558	-	XOO3935	-	two-component system regulatory protein
3518	 63.98	0	4201589..4203448	-	619	58583559	-	XOO3936	-	two-component system sensor protein
3519	 60.75	0	4203686..4204057	-	123	58583560	-	XOO3937	-	hypothetical protein
3520	 65.62	0	4204208..4205260	+	350	58583561	ydgJ	XOO3938	-	oxidoreductase
3521	 64.12	0	4205600..4206541	-	313	58583562	gndA	XOO3939	-	6-phosphogluconate dehydrogenase-like protein
3522	 64.90	0	4206562..4207977	-	471	58583563	-	XOO3940	-	hypothetical protein
3523	 62.44	0	4208071..4208520	-	149	58583564	-	XOO3941	-	hypothetical protein
3524	 65.91	0	4208576..4209373	-	265	122879302	-	XOO3942	-	hypothetical protein
3525	 68.10	+1	4209412..4209690	-	92	58583566	-	XOO3943	-	hypothetical protein
3526	 67.96	+1	4211255..4211563	-	102	58583569	-	XOO3946	-	hypothetical protein
3527	 63.59	0	4211586..4213046	-	486	58583570	pbeF	XOO3947	-	putative nicotinate phosphoribosyltransferase
3528	 63.16	0	4213112..4214167	-	351	58583571	-	XOO3948	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
3529	 61.13	0	4214166..4215194	+	342	58583572	-	XOO3949	-	hypothetical protein
3530	 63.05	0	4215486..4217669	-	727	58583573	prc	XOO3950	-	tail-specific protease
3531	 61.16	0	4219259..4220839	-	5