IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3426	 61.79	0	4084234..4085319	-	361	58583451	mraY	XOO3828	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3427	 66.60	0	4085309..4086820	-	503	58583452	murF	XOO3829	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase
3428	 66.47	0	4086817..4088304	-	495	58583453	murE	XOO3830	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3429	 65.39	0	4088301..4090178	-	625	58583454	ftsI	XOO3831	-	penicillin-binding protein 3
3430	 60.98	0	4090309..4090572	-	87	58583455	ftsL	XOO3832	-	cell division protein
3431	 66.67	0	4090569..4091630	-	353	58583456	mraW	XOO3833	-	S-adenosyl-methyltransferase MraW
3432	 59.87	-1	4091627..4092082	-	151	58583457	-	XOO3834	-	cell division protein MraZ
3433	 69.14	+1	4092397..4093164	+	255	58583458	-	XOO3835	-	hypothetical protein
3434	 61.65	0	4093382..4093780	+	132	58583459	-	XOO3836	-	hypothetical protein
3435	 69.34	+1	4094705..4095526	-	273	58583460	-	XOO3837	-	hypothetical protein
3436	 70.71	+1	4095608..4097338	+	576	58583461	-	XOO3838	-	hypothetical protein
3437	 69.36	+1	4097304..4097711	+	135	58583462	-	XOO3839	-	hypothetical protein
3438	 67.53	+1	4097705..4098280	+	191	58583463	-	XOO3840	-	hypothetical protein
3439	 66.81	0	4098235..4099662	+	475	58583464	dld	XOO3841	-	D-lactate dehydrogenase
3440	 65.64	0	4099676..4100458	-	260	58583465	kdpE	XOO3842	-	two-component system regulatory protein
3441	 67.34	+1	4100382..4103042	-	886	58583466	kdpD	XOO3843	-	two-component system sensor protein
3442	 67.64	+1	4103094..4103711	-	205	58583467	kdpC	XOO3844	-	potassium-transporting ATPase subunit C
3443	 64.67	0	4103764..4105812	-	682	58583468	kdpB	XOO3845	-	potassium-transporting ATPase subunit B
3444	 63.88	0	4105825..4107618	-	597	58583469	kdpA	XOO3846	-	potassium-transporting ATPase subunit A
3445	 62.30	0	4108176..4108748	-	190	58583470	-	XOO3847	-	hypothetical protein
3446	 67.58	+1	4109867..4110523	-	218	58583472	-	XOO3849	-	hypothetical protein
3447	 68.12	+1	4110822..4111919	-	365	58583473	thiL	XOO3850	-	thiamine monophosphate kinase
3448	 64.97	0	4112017..4112487	-	156	58583474	nusB	XOO3851	-	transcription antitermination protein NusB
3449	 67.30	0	4112484..4112960	-	158	58583475	ribH	XOO3852	-	riboflavin synthase subunit beta
3450	 66.49	0	4113262..4114401	-	379	58583476	ribA	XOO3853	-	GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
3451	 63.85	0	4114398..4115000	-	200	122879294	ribE	XOO3854	-	riboflavin synthase subunit alpha
3452	 63.94	0	4115561..4116184	+	207	58583478	-	XOO3855	-	hypothetical protein
3453	 66.04	0	4116240..4117349	-	369	58583479	ribD	XOO3856	-	riboflavin-specific deaminase; 5-amino-6-uracil reductase
3454	 62.96	0	4117346..4117831	-	161	58583480	-	XOO3857	-	acetyltransferase
3455	 61.71	0	4117828..4118352	-	174	122879295	-	XOO3858	-	transcriptional regulator NrdR
3456	 64.31	0	4118352..4118861	-	169	58583482	-	XOO3859	-	hypothetical protein
3457	 63.48	0	4118881..4120134	-	417	58583483	glyA	XOO3860	-	serine hydroxymethyltransferase
3458	 62.68	0	4120320..4122902	-	860	58583484	-	XOO3861	-	TonB-dependent receptor, putative
3459	 64.75	0	4123346..4123867	-	173	58583485	-	XOO3862	-	hypothetical protein
3460	 61.85	0	4123827..4125755	+	642	58583486	yjjK	XOO3863	-	putative ABC transporter ATP-binding protein
3461	 64.93	0	4125930..4126274	+	114	58583487	-	XOO3864	-	hypothetical protein
3462	 61.62	0	4126271..4126627	-	118	58583488	sll7047	XOO3865	-	hypothetical protein
3463	 61.37	0	4127118..4127948	-	276	58583489	-	XOO3866	-	esterase
3464	 63.47	0	4128650..4129807	-	385	58583490	-	XOO3867	-	alcohol dehydrogenase C
3465	 65.58	0	4129824..4130099	-	91	58583491	-	XOO3868	-	hypothetical protein
3466	 64.94	0	4131221..4132321	-	366	58583492	-	XOO3869	-	hypothetical protein
3467	 64.42	0	4132334..4133179	+	281	58583493	-	XOO3870	-	two-component system regulatory protein
3468	 67.00	0	4133176..4134675	+	499	58583494	-	XOO3871	-	two-component system sensor protein
3469	 64.55	0	4134708..4135652	-	314	58583495	-	XOO3872	-	hypothetical protein
3470	 61.02	0	4137150..4137893	-	247	58583496	gsh1	XOO3873	-	glutamate-cysteine ligase precursor
3471	 62.26	0	4138003..4139385	-	460	122879296	-	XOO3874	-	putative ISXo8 transposase
3472	 66.39	0	4139977..4140699	+	240	122879297	-	XOO3875	-	two-component system sensor protein
3473	 65.13	0	4140886..4142250	-	454	58583500	gsh1	XOO3877	-	glutamate-cysteine ligase precursor
3474	 68.46	+1	4142271..4143161	+	296	58583501	dr161	XOO3878	-	nodulin 21-related protein
3475	 59.20	-1	4143299..4143646	-	115	58583502	-	XOO3879	-	putative transposase
3476	 58.28	-1	4143612..4144064	-	150	58583503	-	XOO3880	-	putative transposase
3477	 66.15	0	4144108..4144884	-	258	58583504	yihA	XOO3881	-	GTPase EngB
3478	 68.30	+1	4144876..4145673	+	265	58583505	cycA	XOO3882	-	cytochrome C4
3479	 66.18	0	4146509..4147324	+	271	122879298	dsbA	XOO3884	-	thiol:disulfide interchange protein
3480	 65.10	0	4147344..4148111	+	255	58583508	-	XOO3885	-	hypothetical protein
3481	 61.82	0	4148695..4148859	+	54	58583510	betT	XOO3887	-	high-affinity choline transport
3482	 62.45	0	4148856..4149401	-	181	58583511	-	XOO3888	-	IS1404 transposase
3483	 58.89	-1	4149696..4149965	-	89	121632130	-	YXOOp13	-	IS1404 transposase
3484	 58.16	-1	4150738..4151031	+	97	58583514	tnp	XOO3891	-	transposase
3485	 62.06	0	4151831..4153177	-	448	58583515	-	XOO3892	-	ISxac1 transposase
3486	 55.91	-2	4153288..4155081	+	597	58583516	metC	XOO3893	-	putative cystathionine gamma-synthase protein
3487	 61.40	0	4155294..4156262	+	322	58583517	-	XOO3894	-	putative transposase
3488	 61.11	0	4156997..4157266	+	89	58583518	tnp	XOO3895	-	transposase
3489	 58.87	-1	4158644..4158874	-	76	58583521	-	XOO3898	-	putative transposase
3490	 61.93	0	4159073..4159621	+	182	58583522	-	XOO3899	-	putative ISXo8 transposase
3491	 63.99	0	4160649..4161881	+	410	122879299	cca	XOO3900	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
3492	 61.40	0	4164241..4165209	-	322	58583528	-	XOO3905	-	putative transposase
3493	 58.59	-1	4165901..4166692	-	263	58583530	fyuA	XOO3907	-	TonB-dependent receptor
3494	 58.95	-1	4166679..4167041	-	120	58583531	fyuA	XOO3908	-	TonB-dependent receptor
3495	 61.54	0	4167070..4168512	-	480	58583532	fyuA	XOO3909	-	TonB-dependent receptor
3496	 63.23	0	4168851..4169867	+	338	58583533	-	XOO3910	-	transposase
3497	 64.30	0	4171088..4173238	+	716	58583534	hmsH	XOO3911	-	HmsH
3498	 62.75	0	4173147..4175138	+	663	58583535	hmsF	XOO3912	-	HmsF
3499	 63.00	0	4175140..4176393	+	417	161898963	hmsR	XOO3913	-	N-glycosyltransferase PgaC
3500	 65.18	0	4176390..4176995	+	201	58583537	-	XOO3914	-	hypothetical protein
3501	 67.01	0	4177415..4178575	-	386	58583538	nagA	XOO3915	-	N-acetylglucosamine-6-phosphate deacetylase
3502	 65.99	0	4178572..4179600	-	342	58583540	glmS	XOO3917	-	glucosamine-fructose-6-phosphate aminotransferase
3503	 64.49	0	4179597..4180700	-	367	58583541	-	XOO3918	-	LacI family transcription regulator
3504	 61.82	0	4180714..4181991	-	425	58583542	gluP	XOO3919	-	glucose-galactose transporter
3505	 64.82	0	4182036..4182902	-	288	58583543	-	XOO3920	-	GntR family transcriptional regulator
3506	 64.37	0	4183018..4184106	-	362	58583544	-	XOO3921	-	hypothetical protein
3507	 64.99	0	4184318..4186579	-	753