IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3290	 66.37	0	3922833..3924176	+	447	58583290	phoR	XOO3667	-	two-component system sensor protein
3291	 64.10	0	3924292..3926394	+	700	122879283	ppk	XOO3668	-	polyphosphate kinase
3292	 65.68	0	3926467..3928092	+	541	58583292	ppx	XOO3669	-	exopolyphosphatase
3293	 64.56	0	3928297..3929433	+	378	58583293	gtrB	XOO3670	-	glycosyl transferase
3294	 66.48	0	3929414..3929956	+	180	58583294	-	XOO3671	-	hypothetical protein
3295	 66.26	0	3930604..3931347	+	247	58583295	-	XOO3672	-	UDP-2,3-diacylglucosamine hydrolase
3296	 64.52	0	3931527..3931946	-	139	122879284	-	XOO3673	-	hypothetical protein
3297	 64.76	0	3933015..3933851	-	278	58583297	-	XOO3674	-	hypothetical protein
3298	 63.74	0	3933978..3935444	-	488	58583298	purF	XOO3675	-	amidophosphoribosyltransferase
3299	 66.12	0	3935680..3936228	-	182	58583300	cvpA	XOO3677	-	colicin V production protein
3300	 69.62	+1	3936437..3937519	-	360	58583301	-	XOO3678	-	hypothetical protein
3301	 67.09	0	3937587..3939002	-	471	58583302	folC	XOO3679	-	folylpolyglutamate synthase; dihydrofolate synthase
3302	 67.09	0	3939857..3940561	-	234	58583303	pgmA	XOO3680	-	phosphoglycerate mutase
3303	 65.55	0	3940593..3942827	-	744	58583304	-	XOO3681	-	hypothetical protein
3304	 63.18	0	3942989..3944965	-	658	58583305	-	XOO3682	-	non-hemolytic phospholipase C
3305	 63.23	0	3944871..3947288	+	805	58583306	fecA	XOO3683	-	TonB-dependent receptor
3306	 62.22	0	3947791..3948825	+	344	58583307	tdh	XOO3684	-	L-threonine 3-dehydrogenase
3307	 60.64	0	3948895..3949608	-	237	58583308	-	XOO3685	-	hypothetical protein
3308	 66.47	0	3949962..3951002	-	346	58583309	cysA	XOO3686	-	sulfate ABC transporter ATP-binding protein
3309	 63.10	0	3951004..3951957	-	317	58583311	cysW	XOO3688	-	ABC transporter sulfate permease
3310	 64.00	0	3951954..3952814	-	286	58583312	cysU	XOO3689	-	ABC transporter sulfate permease
3311	 63.66	0	3952818..3953915	-	365	58583313	sbp	XOO3690	-	ABC transporter sulfate binding protein
3312	 64.35	0	3954006..3955214	+	402	161898966	kbl	XOO3691	-	2-amino-3-ketobutyrate coenzyme A ligase
3313	 67.94	+1	3955560..3956420	-	286	58583316	-	XOO3693	-	pseudouridylate synthase
3314	 67.45	+1	3956440..3956949	-	169	58583317	-	XOO3694	-	hypothetical protein
3315	 61.11	0	3957682..3958239	-	185	58583319	mopB	XOO3696	-	outer membrane protein
3316	 64.81	0	3958655..3959677	+	340	58583320	-	XOO3697	-	oxidoreductase
3317	 66.47	0	3959885..3961924	+	679	58583321	fadH	XOO3698	-	2,4-dienoyl-CoA reductase
3318	 66.52	0	3962023..3963393	+	456	58583322	-	XOO3699	-	hypothetical protein
3319	 63.17	0	3964000..3964485	+	161	58583324	-	XOO3701	-	IS1404 transposase
3320	 57.86	-1	3966483..3966902	+	139	58583330	-	XOO3707	-	putative transposase
3321	 58.70	-1	3966868..3967344	+	158	58583331	-	XOO3708	-	putative transposase
3322	 64.62	0	3967341..3968171	+	276	58583332	torS	XOO3709	-	two-component system sensor protein
3323	 64.14	0	3968159..3968632	+	157	58583333	-	XOO3710	-	two-component system regulatory protein
3324	 66.67	0	3968747..3969001	-	84	58583334	-	XOO3711	-	hypothetical protein
3325	 67.13	0	3968985..3969626	-	213	58583335	gst	XOO3712	-	glutathione S-transferase
3326	 64.54	0	3970031..3971770	+	579	58583336	glnS	XOO3713	-	glutaminyl-tRNA synthetase
3327	 58.01	-1	3972198..3972740	-	180	58583337	reut4275	XOO3714	-	IS30 family transposase
3328	 54.81	-2	3973204..3973650	-	148	58583339	-	XOO3716	-	transposase
3329	 58.91	-1	3974197..3974673	-	158	58583340	-	XOO3717	-	putative transposase
3330	 58.54	-1	3974639..3974995	-	118	58583341	-	XOO3718	-	putative transposase
3331	 66.19	0	3975155..3975364	-	69	121632129	-	XOO4903	-	hypothetical protein
3332	 68.80	+1	3975499..3976200	+	233	58583342	-	XOO3719	-	integral membrane protein
3333	 67.02	0	3976964..3977524	+	186	122879285	-	XOO3720	-	hypothetical protein
3334	 64.85	0	3977561..3978604	+	347	122879286	-	XOO3721	-	putative RNA 2'-O-ribose methyltransferase
3335	 61.95	0	3978926..3980071	-	381	58583345	gfo	XOO3722	-	glucose-fructose oxidoreductase
3336	 63.87	0	3980259..3981008	+	249	58583346	-	XOO3723	-	gluconolactonase precursor
3337	 61.99	0	3980966..3981136	+	56	58583347	-	XOO3724	-	gluconolactonase precursor
3338	 61.96	0	3981219..3981941	+	240	58583348	-	XOO3725	-	hypothetical protein
3339	 64.38	0	3982111..3982548	+	145	58583349	-	XOO3726	-	hypothetical protein
3340	 66.88	0	3982676..3983149	+	157	58583350	-	XOO3727	-	MarR family transcriptional regulator
3341	 61.96	0	3983195..3984022	+	275	58583351	fadB	XOO3728	-	p-hydroxycinnamoyl CoA hydratase/lyase
3342	 65.51	0	3984106..3985575	+	489	58583352	badH	XOO3729	-	aldehyde dehydrogenase
3343	 63.41	0	3985601..3987256	+	551	58583353	-	XOO3730	-	acyl-CoA synthetase
3344	 63.40	0	3987441..3988481	-	346	58583354	pcaQ	XOO3731	-	transcriptional regulator
3345	 64.33	0	3988879..3989775	-	298	58583357	pcaH	XOO3734	-	protocatechuate 4,5-dioxygenase subunit beta
3346	 65.71	0	3990118..3990327	+	69	58583358	vanR	XOO3735	-	GntR family transcriptional regulator
3347	 61.47	0	3990435..3990896	-	153	58583359	-	XOO3736	-	putative transposase
3348	 63.32	0	3990859..3991875	-	338	58583360	-	XOO3737	-	transposase
3349	 63.28	0	3991903..3992433	-	176	58583361	-	XOO3738	-	putative transposase
3350	 66.54	0	3992461..3993273	-	270	58583362	-	XOO3739	-	hydrolase
3351	 68.76	+1	3993401..3994597	-	398	58583363	visC	XOO3740	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
3352	 69.38	+1	3994579..3995793	-	404	58583364	ubiH	XOO3741	-	2-octaprenyl-6-methoxyphenyl hydroxylase
3353	 68.74	+1	3996086..3996664	+	192	122879287	-	XOO3742	-	hypothetical protein
3354	 68.10	+1	3996668..3997225	+	185	58583366	-	XOO3743	-	hypothetical protein
3355	 69.00	+1	3997230..3998171	+	313	58583367	-	XOO3744	-	acetoin utilization family protein
3356	 61.70	0	3998242..4000740	+	832	58583368	ostA	XOO3745	-	organic solvent tolerance protein
3357	 64.44	0	4000737..4002128	+	463	58583369	surA	XOO3746	-	peptidyl-prolyl cis-trans isomerase
3358	 68.00	+1	4002149..4003120	+	323	58583370	pdxA	XOO3747	-	4-hydroxythreonine-4-phosphate dehydrogenase
3359	 64.64	0	4003377..4004165	+	262	58583371	ksgA	XOO3748	-	dimethyladenosine transferase
3360	 66.15	0	4004202..4004585	+	127	58583372	apaG	XOO3749	-	ApaG
3361	 66.04	0	4004614..4005570	+	318	58583373	apaH	XOO3750	-	diadenosine tetraphosphatase
3362	 63.43	0	4005624..4006118	-	164	58583374	folA	XOO3751	-	dihydrofolate reductase type III
3363	 62.01	0	4006469..4007263	-	264	58583375	thyA	XOO3752	-	thymidylate synthase
3364	 63.75	0	4007260..4008150	-	296	58583376	lgt	XOO3753	-	prolipoprotein diacylglyceryl transferase
3365	 66.26	0	4008205..4008696	-	163	58583377	-	XOO3754	-	hypothetical protein
3366	 68.67	+1	4008696..4009592	-	298	58583378	-	XOO3755	-	glycine rich protein
3367	 60.70	0	4009924..4010694	-	256	58583379	-	XOO3756	-	hypothetical protein
3368	 65.31	0	4010658..4011026	-	122	58583380	dgkA	XOO3757	-	diacylglycerol kinase
3369	 65.87	0	4011221..4011724	+	167	122879288	-	XOO3758	-	hypothetical protein
3370	 63.27	0	4011776..4011922	+	48	58583382	-	XOO3759	-	hypothetical protein
3371	 58.06	-1	4012231..4012602	+	123	58583383	-	XOO3760	-	putative transposase
3372	 58.91	-1	4012568..4013044	+	158