IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3286	 64.65	0	3919409..3919804	-	131	58583286	-	XOO3663	-	hypothetical protein
3287	 63.14	0	3919801..3920169	-	122	58583287	grxC	XOO3664	-	glutaredoxin
3288	 67.03	0	3920259..3921905	+	548	122879282	-	XOO3665	-	hypothetical protein
3289	 66.09	0	3922086..3922775	+	229	58583289	phoB	XOO3666	-	two-component system regulatory protein
3290	 66.37	0	3922833..3924176	+	447	58583290	phoR	XOO3667	-	two-component system sensor protein
3291	 64.10	0	3924292..3926394	+	700	122879283	ppk	XOO3668	-	polyphosphate kinase
3292	 65.68	0	3926467..3928092	+	541	58583292	ppx	XOO3669	-	exopolyphosphatase
3293	 64.56	0	3928297..3929433	+	378	58583293	gtrB	XOO3670	-	glycosyl transferase
3294	 66.48	0	3929414..3929956	+	180	58583294	-	XOO3671	-	hypothetical protein
3295	 66.26	0	3930604..3931347	+	247	58583295	-	XOO3672	-	UDP-2,3-diacylglucosamine hydrolase
3296	 64.52	0	3931527..3931946	-	139	122879284	-	XOO3673	-	hypothetical protein
3297	 64.76	0	3933015..3933851	-	278	58583297	-	XOO3674	-	hypothetical protein
3298	 63.74	0	3933978..3935444	-	488	58583298	purF	XOO3675	-	amidophosphoribosyltransferase
3299	 66.12	0	3935680..3936228	-	182	58583300	cvpA	XOO3677	-	colicin V production protein
3300	 69.62	+1	3936437..3937519	-	360	58583301	-	XOO3678	-	hypothetical protein
3301	 67.09	0	3937587..3939002	-	471	58583302	folC	XOO3679	-	folylpolyglutamate synthase; dihydrofolate synthase
3302	 67.09	0	3939857..3940561	-	234	58583303	pgmA	XOO3680	-	phosphoglycerate mutase
3303	 65.55	0	3940593..3942827	-	744	58583304	-	XOO3681	-	hypothetical protein
3304	 63.18	0	3942989..3944965	-	658	58583305	-	XOO3682	-	non-hemolytic phospholipase C
3305	 63.23	0	3944871..3947288	+	805	58583306	fecA	XOO3683	-	TonB-dependent receptor
3306	 62.22	0	3947791..3948825	+	344	58583307	tdh	XOO3684	-	L-threonine 3-dehydrogenase
3307	 60.64	0	3948895..3949608	-	237	58583308	-	XOO3685	-	hypothetical protein
3308	 66.47	0	3949962..3951002	-	346	58583309	cysA	XOO3686	-	sulfate ABC transporter ATP-binding protein
3309	 63.10	0	3951004..3951957	-	317	58583311	cysW	XOO3688	-	ABC transporter sulfate permease
3310	 64.00	0	3951954..3952814	-	286	58583312	cysU	XOO3689	-	ABC transporter sulfate permease
3311	 63.66	0	3952818..3953915	-	365	58583313	sbp	XOO3690	-	ABC transporter sulfate binding protein
3312	 64.35	0	3954006..3955214	+	402	161898966	kbl	XOO3691	-	2-amino-3-ketobutyrate coenzyme A ligase
3313	 67.94	+1	3955560..3956420	-	286	58583316	-	XOO3693	-	pseudouridylate synthase
3314	 67.45	+1	3956440..3956949	-	169	58583317	-	XOO3694	-	hypothetical protein
3315	 61.11	0	3957682..3958239	-	185	58583319	mopB	XOO3696	-	outer membrane protein
3316	 64.81	0	3958655..3959677	+	340	58583320	-	XOO3697	-	oxidoreductase
3317	 66.47	0	3959885..3961924	+	679	58583321	fadH	XOO3698	-	2,4-dienoyl-CoA reductase
3318	 66.52	0	3962023..3963393	+	456	58583322	-	XOO3699	-	hypothetical protein
3319	 63.17	0	3964000..3964485	+	161	58583324	-	XOO3701	-	IS1404 transposase
3320	 57.86	-1	3966483..3966902	+	139	58583330	-	XOO3707	-	putative transposase
3321	 58.70	-1	3966868..3967344	+	158	58583331	-	XOO3708	-	putative transposase
3322	 64.62	0	3967341..3968171	+	276	58583332	torS	XOO3709	-	two-component system sensor protein
3323	 64.14	0	3968159..3968632	+	157	58583333	-	XOO3710	-	two-component system regulatory protein
3324	 66.67	0	3968747..3969001	-	84	58583334	-	XOO3711	-	hypothetical protein
3325	 67.13	0	3968985..3969626	-	213	58583335	gst	XOO3712	-	glutathione S-transferase
3326	 64.54	0	3970031..3971770	+	579	58583336	glnS	XOO3713	-	glutaminyl-tRNA synthetase
3327	 58.01	-1	3972198..3972740	-	180	58583337	reut4275	XOO3714	-	IS30 family transposase
3328	 54.81	-2	3973204..3973650	-	148	58583339	-	XOO3716	-	transposase
3329	 58.91	-1	3974197..3974673	-	158	58583340	-	XOO3717	-	putative transposase
3330	 58.54	-1	3974639..3974995	-	118	58583341	-	XOO3718	-	putative transposase
3331	 66.19	0	3975155..3975364	-	69	121632129	-	XOO4903	-	hypothetical protein
3332	 68.80	+1	3975499..3976200	+	233	58583342	-	XOO3719	-	integral membrane protein
3333	 67.02	0	3976964..3977524	+	186	122879285	-	XOO3720	-	hypothetical protein
3334	 64.85	0	3977561..3978604	+	347	122879286	-	XOO3721	-	putative RNA 2'-O-ribose methyltransferase
3335	 61.95	0	3978926..3980071	-	381	58583345	gfo	XOO3722	-	glucose-fructose oxidoreductase
3336	 63.87	0	3980259..3981008	+	249	58583346	-	XOO3723	-	gluconolactonase precursor
3337	 61.99	0	3980966..3981136	+	56	58583347	-	XOO3724	-	gluconolactonase precursor
3338	 61.96	0	3981219..3981941	+	240	58583348	-	XOO3725	-	hypothetical protein
3339	 64.38	0	3982111..3982548	+	145	58583349	-	XOO3726	-	hypothetical protein
3340	 66.88	0	3982676..3983149	+	157	58583350	-	XOO3727	-	MarR family transcriptional regulator
3341	 61.96	0	3983195..3984022	+	275	58583351	fadB	XOO3728	-	p-hydroxycinnamoyl CoA hydratase/lyase
3342	 65.51	0	3984106..3985575	+	489	58583352	badH	XOO3729	-	aldehyde dehydrogenase
3343	 63.41	0	3985601..3987256	+	551	58583353	-	XOO3730	-	acyl-CoA synthetase
3344	 63.40	0	3987441..3988481	-	346	58583354	pcaQ	XOO3731	-	transcriptional regulator
3345	 64.33	0	3988879..3989775	-	298	58583357	pcaH	XOO3734	-	protocatechuate 4,5-dioxygenase subunit beta
3346	 65.71	0	3990118..3990327	+	69	58583358	vanR	XOO3735	-	GntR family transcriptional regulator
3347	 61.47	0	3990435..3990896	-	153	58583359	-	XOO3736	-	putative transposase
3348	 63.32	0	3990859..3991875	-	338	58583360	-	XOO3737	-	transposase
3349	 63.28	0	3991903..3992433	-	176	58583361	-	XOO3738	-	putative transposase
3350	 66.54	0	3992461..3993273	-	270	58583362	-	XOO3739	-	hydrolase
3351	 68.76	+1	3993401..3994597	-	398	58583363	visC	XOO3740	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
3352	 69.38	+1	3994579..3995793	-	404	58583364	ubiH	XOO3741	-	2-octaprenyl-6-methoxyphenyl hydroxylase
3353	 68.74	+1	3996086..3996664	+	192	122879287	-	XOO3742	-	hypothetical protein
3354	 68.10	+1	3996668..3997225	+	185	58583366	-	XOO3743	-	hypothetical protein
3355	 69.00	+1	3997230..3998171	+	313	58583367	-	XOO3744	-	acetoin utilization family protein
3356	 61.70	0	3998242..4000740	+	832	58583368	ostA	XOO3745	-	organic solvent tolerance protein
3357	 64.44	0	4000737..4002128	+	463	58583369	surA	XOO3746	-	peptidyl-prolyl cis-trans isomerase
3358	 68.00	+1	4002149..4003120	+	323	58583370	pdxA	XOO3747	-	4-hydroxythreonine-4-phosphate dehydrogenase
3359	 64.64	0	4003377..4004165	+	262	58583371	ksgA	XOO3748	-	dimethyladenosine transferase
3360	 66.15	0	4004202..4004585	+	127	58583372	apaG	XOO3749	-	ApaG
3361	 66.04	0	4004614..4005570	+	318	58583373	apaH	XOO3750	-	diadenosine tetraphosphatase
3362	 63.43	0	4005624..4006118	-	164	58583374	folA	XOO3751	-	dihydrofolate reductase type III
3363	 62.01	0	4006469..4007263	-	264	58583375	thyA	XOO3752	-	thymidylate synthase
3364	 63.75	0	4007260..4008150	-	296	58583376	lgt	XOO3753	-	prolipoprotein diacylglyceryl transferase
3365	 66.26	0	4008205..4008696	-	163	58583377	-	XOO3754	-	hypothetical protein
3366	 68.67	+1	4008696..4009592	-	298	58583378	-	XOO3755	-	glycine rich protein
3367	 60.70	0	4009924..4010694	-	256	58583379	-	XOO3756	-	hypothetical protein
3368	 65.31	0	4010658..4011026	-	122	58583380	dgkA	XOO3757	-	diacylglycerol kinase
3369	 65.87	0	4011221..4011724	+	167	122879288	-	XOO3758	-	hypothetical protein
3370	 63.27	0	4011776..4011922	+	48	58583382	-	XOO3759	-	hypothetical protein
3371	 58.06	-1	4012231..4012602	+	123	58583383	-	XOO3760	-	putative transposase
3372	 58.91	-1	4012568..4013044	+	158	58583384	-	XOO3761	-	putative transposase
3373	 64.64	0	4013348..4014679	-	443	58583385	colS	XOO3762	-	two-component system sensor protein
3374	 66.35	0	4014766..4015389	-	207	58583386	colR	XOO3763	-	two-component system regulatory protein
3375	 64.87	0	4015572..4016240	-	222	58583387	tesA	XOO3764	-	acyl-CoA thioesterase I
3376	 69.67	+1	4016350..4016949	+	199	58583388	ftsE	XOO3765	-	ABC transporter ATP-binding protein
3377	 67.91	+1	4016946..4019429	+	827	58583389	-	XOO3766	-	oxidoreductase
3378	 63.89	0	4019581..4020660	+	359	58583390	tauD	XOO3767	-	taurine dioxygenase
3379	 60.75	0	4021428..4021748	+	106	58583392	-	XOO3769	-	ABC transporter substrate binding protein
3380	 65.74	0	4023361..4023468	+	35	58583396	nrtB	XOO3773	-	permease
3381	 57.91	-1	4023551..4023904	+	117	58583397	-	XOO3774	-	hypothetical protein
3382	 64.04	0	4024206..4024853	-	215	58583398	-	XOO3775	-	hypothetical protein
3383	 56.88	-1	4024888..4025490	-	200	122879289	-	XOO3776	-	hypothetical protein
3384	 61.11	0	4026717..4026914	-	65	58583403	phuR	XOO3780	-	outer membrane hemin receptor
3385	 60.57	0	4027339..4027584	-	81	58583404	-	XOO3781	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.