IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3246	 64.72	0	3884180..3885460	-	426	58583244	-	XOO3621	-	extracellular protease
3247	 69.93	+1	3884521..3884673	-	50	58583245	-	XOO3622	-	extracellular protease
3248	 64.53	0	3884686..3884919	-	77	58583246	-	XOO3623	-	extracellular protease
3249	 66.28	0	3885054..3885311	+	85	121632126	-	YXOOp10	-	hypothetical protein
3250	 65.47	0	3885651..3886736	-	361	58583247	ilvE	XOO3624	-	branched-chain amino acid aminotransferase
3251	 62.52	0	3886801..3887355	-	184	122879279	-	XOO3625	-	hypothetical protein
3252	 69.38	+1	3887482..3887961	+	159	58583249	-	XOO3626	-	hypothetical protein
3253	 58.33	-1	3888491..3888862	+	123	58583250	-	XOO3627	-	putative transposase
3254	 64.25	0	3889218..3890705	-	495	58583252	pntB	XOO3629	-	pyridine nucleotide transhydrogenase subunit beta
3255	 63.48	0	3890702..3891046	-	114	58583253	pntA	XOO3630	-	pyridine nucleotide transhydrogenase subunit alpha
3256	 68.88	+1	3891029..3891706	+	225	58583254	-	XOO3631	-	RNA polymerase factor sigma-70
3257	 72.08	+2	3891703..3892053	+	116	58583255	-	XOO3632	-	hypothetical protein
3258	 65.77	0	3892209..3892544	+	111	121632127	-	YXOOp11	-	hypothetical protein
3259	 68.33	+1	3892942..3894141	-	399	58583256	pntA	XOO3633	-	pyridine nucleotide transhydrogenase
3260	 62.92	0	3894232..3895593	-	453	58583257	-	XOO3634	-	putative ISXo8 transposase
3261	 60.77	0	3895787..3896719	-	310	58583258	-	XOO3635	-	putative transposase
3262	 65.43	0	3896822..3899161	-	779	122879280	-	XOO3636	-	hypothetical protein
3263	 67.51	+1	3899397..3900104	+	235	58583260	-	XOO3637	-	hypothetical protein
3264	 65.45	0	3900101..3901087	+	328	58583261	exo	XOO3638	-	exodeoxyribonuclease IX
3265	 64.49	0	3901084..3901635	+	183	58583262	-	XOO3639	-	MutT-like protein
3266	 64.66	0	3901616..3902413	+	265	58583263	-	XOO3640	-	hypothetical protein
3267	 62.74	0	3902615..3903556	-	313	58583265	pip	XOO3642	-	proline imino-peptidase, chain A
3268	 66.06	0	3904452..3904778	-	108	121632128	-	YXOOp12	-	hypothetical protein
3269	 63.91	0	3904822..3905220	-	132	58583266	-	XOO3643	-	hypothetical protein
3270	 69.27	+1	3905458..3906303	-	281	58583267	hemK	XOO3644	-	protoporphyrinogen oxidase
3271	 61.17	0	3906505..3907068	+	187	58583268	ahpC	XOO3645	-	alkyl hydroperoxide reductase subunit C
3272	 64.00	0	3907210..3908856	+	548	58583269	ahpF	XOO3646	-	alkyl hydroperoxide reductase subunit F
3273	 63.38	0	3908948..3909889	+	313	58583270	oxyR	XOO3647	-	oxidative stress transcriptional regulator
3274	 67.59	+1	3910316..3910747	+	143	122879281	rnk	XOO3648	-	regulator of nucleoside diphosphate kinase
3275	 64.71	0	3910810..3911778	+	322	58583272	talB	XOO3649	-	transaldolase B
3276	 60.63	0	3912028..3912441	+	137	58583273	-	XOO3650	-	putative ISXo8 transposase
3277	 61.35	0	3912442..3912723	-	93	58583274	-	XOO3651	-	transposase
3278	 63.07	0	3913502..3914698	+	398	58583277	-	XOO3654	-	putative ISXo8 transposase
3279	 65.11	0	3914840..3915418	+	192	58583279	-	XOO3656	-	hypothetical protein
3280	 62.16	0	3915834..3916499	-	221	58583280	pms	XOO3657	-	methionine sulfoxide reductase A
3281	 61.11	0	3916580..3917155	-	191	58583281	-	XOO3658	-	hypothetical protein
3282	 68.21	+1	3917313..3917831	+	172	58583282	-	XOO3659	-	two-component system regulatory protein
3283	 61.38	0	3917875..3918423	-	182	58583283	-	XOO3660	-	putative ISXo8 transposase
3284	 59.20	-1	3918589..3918936	-	115	58583284	-	XOO3661	-	putative transposase
3285	 56.20	-2	3918902..3919312	-	136	58583285	-	XOO3662	-	putative transposase
3286	 64.65	0	3919409..3919804	-	131	58583286	-	XOO3663	-	hypothetical protein
3287	 63.14	0	3919801..3920169	-	122	58583287	grxC	XOO3664	-	glutaredoxin
3288	 67.03	0	3920259..3921905	+	548	122879282	-	XOO3665	-	hypothetical protein
3289	 66.09	0	3922086..3922775	+	229	58583289	phoB	XOO3666	-	two-component system regulatory protein
3290	 66.37	0	3922833..3924176	+	447	58583290	phoR	XOO3667	-	two-component system sensor protein
3291	 64.10	0	3924292..3926394	+	700	122879283	ppk	XOO3668	-	polyphosphate kinase
3292	 65.68	0	3926467..3928092	+	541	58583292	ppx	XOO3669	-	exopolyphosphatase
3293	 64.56	0	3928297..3929433	+	378	58583293	gtrB	XOO3670	-	glycosyl transferase
3294	 66.48	0	3929414..3929956	+	180	58583294	-	XOO3671	-	hypothetical protein
3295	 66.26	0	3930604..3931347	+	247	58583295	-	XOO3672	-	UDP-2,3-diacylglucosamine hydrolase
3296	 64.52	0	3931527..3931946	-	139	122879284	-	XOO3673	-	hypothetical protein
3297	 64.76	0	3933015..3933851	-	278	58583297	-	XOO3674	-	hypothetical protein
3298	 63.74	0	3933978..3935444	-	488	58583298	purF	XOO3675	-	amidophosphoribosyltransferase
3299	 66.12	0	3935680..3936228	-	182	58583300	cvpA	XOO3677	-	colicin V production protein
3300	 69.62	+1	3936437..3937519	-	360	58583301	-	XOO3678	-	hypothetical protein
3301	 67.09	0	3937587..3939002	-	471	58583302	folC	XOO3679	-	folylpolyglutamate synthase; dihydrofolate synthase
3302	 67.09	0	3939857..3940561	-	234	58583303	pgmA	XOO3680	-	phosphoglycerate mutase
3303	 65.55	0	3940593..3942827	-	744	58583304	-	XOO3681	-	hypothetical protein
3304	 63.18	0	3942989..3944965	-	658	58583305	-	XOO3682	-	non-hemolytic phospholipase C
3305	 63.23	0	3944871..3947288	+	805	58583306	fecA	XOO3683	-	TonB-dependent receptor
3306	 62.22	0	3947791..3948825	+	344	58583307	tdh	XOO3684	-	L-threonine 3-dehydrogenase
3307	 60.64	0	3948895..3949608	-	237	58583308	-	XOO3685	-	hypothetical protein
3308	 66.47	0	3949962..3951002	-	346	58583309	cysA	XOO3686	-	sulfate ABC transporter ATP-binding protein
3309	 63.10	0	3951004..3951957	-	317	58583311	cysW	XOO3688	-	ABC transporter sulfate permease
3310	 64.00	0	3951954..3952814	-	286	58583312	cysU	XOO3689	-	ABC transporter sulfate permease
3311	 63.66	0	3952818..3953915	-	365	58583313	sbp	XOO3690	-	ABC transporter sulfate binding protein
3312	 64.35	0	3954006..3955214	+	402	161898966	kbl	XOO3691	-	2-amino-3-ketobutyrate coenzyme A ligase
3313	 67.94	+1	3955560..3956420	-	286	58583316	-	XOO3693	-	pseudouridylate synthase
3314	 67.45	+1	3956440..3956949	-	169	58583317	-	XOO3694	-	hypothetical protein
3315	 61.11	0	3957682..3958239	-	185	58583319	mopB	XOO3696	-	outer membrane protein
3316	 64.81	0	3958655..3959677	+	340	58583320	-	XOO3697	-	oxidoreductase
3317	 66.47	0	3959885..3961924	+	679	58583321	fadH	XOO3698	-	2,4-dienoyl-CoA reductase
3318	 66.52	0	3962023..3963393	+	456	58583322	-	XOO3699	-	hypothetical protein
3319	 63.17	0	3964000..3964485	+	161	58583324	-	XOO3701	-	IS1404 transposase
3320	 57.86	-1	3966483..3966902	+	139	58583330	-	XOO3707	-	putative transposase
3321	 58.70	-1	3966868..3967344	+	158	58583331	-	XOO3708	-	putative transposase
3322	 64.62	0	3967341..3968171	+	276	58583332	torS	XOO3709	-	two-component system sensor protein
3323	 64.14	0	3968159..3968632	+	157	58583333	-	XOO3710	-	two-component system regulatory protein
3324	 66.67	0	3968747..3969001	-	84	58583334	-	XOO3711	-	hypothetical protein
3325	 67.13	0	3968985..3969626	-	213	58583335	gst	XOO3712	-	glutathione S-transferase
3326	 64.54	0	3970031..3971770	+	579	58583336	glnS	XOO3713	-	glutaminyl-tRNA synthetase
3327	 58.01	-1	3972198..3972740	-	180	58583337	reut4275	XOO3714	-	IS30 family transposase
3328	 54.81	-2	3973204..3973650	-	148