IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3221	 60.37	0	3860195..3860623	-	142	58583219	rplK	XOO3596	-	50S ribosomal protein L11
3222	 58.50	-1	3860820..3861431	-	203	58583220	nusG	XOO3597	-	transcription antitermination protein NusG
3223	 55.47	-2	3861391..3861801	-	136	58583221	secE	XOO3598	-	preprotein translocase subunit SecE
3224	 62.30	0	3862032..3863222	-	396	58583222	tufB	XOO3599	-	elongation factor Tu
3225	 62.09	0	3863722..3864813	-	363	58583223	ychF	XOO3600	-	translation-associated GTPase
3226	 63.08	0	3864888..3865472	-	194	122879276	pth	XOO3601	-	peptidyl-tRNA hydrolase
3227	 60.22	-1	3865524..3866159	-	211	58583225	rplY	XOO3602	-	50S ribosomal protein L25/general stress protein Ctc
3228	 63.40	0	3866269..3867309	-	346	58583226	-	XOO3603	-	ribose-phosphate pyrophosphokinase
3229	 66.44	0	3867436..3868323	-	295	58583227	ipk	XOO3604	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
3230	 69.57	+1	3868305..3868958	-	217	58583228	lolB	XOO3605	-	outer membrane lipoprotein LolB
3231	 68.02	+1	3868955..3870652	-	565	58583229	-	XOO3606	-	hypothetical protein
3232	 66.44	0	3870709..3872007	+	432	58583230	hemA	XOO3607	-	glutamyl-tRNA reductase
3233	 65.38	0	3871985..3873070	+	361	58583231	prfA	XOO3608	-	peptide chain release factor 1
3234	 65.85	0	3873067..3874773	+	568	58583232	-	XOO3609	-	hypothetical protein
3235	 62.81	0	3875239..3875757	+	172	58583233	moaB	XOO3610	-	molybdopterin biosynthesis protein B
3236	 61.81	0	3875790..3876572	+	260	58583234	-	XOO3611	-	transcriptional regulator
3237	 68.70	+1	3876554..3877783	-	409	58583235	-	XOO3612	-	hypothetical protein
3238	 71.11	+2	3877869..3878138	-	89	58583236	acyP	XOO3613	-	acylphosphatase
3239	 68.33	+1	3878135..3878737	-	200	58583237	yneN	XOO3614	-	thioredoxin
3240	 64.55	0	3878734..3880011	-	425	58583238	rbn	XOO3615	-	fused ribonuclease BN/uncharacterized domain-containing protein
3241	 70.79	+1	3880430..3880720	+	96	58583240	-	XOO3617	-	tryptophan repressor binding protein
3242	 68.12	+1	3880717..3881268	+	183	122879277	-	XOO3616	-	tryptophan repressor binding protein
3243	 62.66	0	3881275..3882447	-	390	58583241	-	XOO3618	-	xylanase
3244	 60.91	0	3883009..3883494	+	161	122879278	aspG	XOO3619	-	asparaginase
3245	 65.70	0	3883499..3883912	+	137	58583243	-	XOO3620	-	transcriptional regulator
3246	 64.72	0	3884180..3885460	-	426	58583244	-	XOO3621	-	extracellular protease
3247	 69.93	+1	3884521..3884673	-	50	58583245	-	XOO3622	-	extracellular protease
3248	 64.53	0	3884686..3884919	-	77	58583246	-	XOO3623	-	extracellular protease
3249	 66.28	0	3885054..3885311	+	85	121632126	-	YXOOp10	-	hypothetical protein
3250	 65.47	0	3885651..3886736	-	361	58583247	ilvE	XOO3624	-	branched-chain amino acid aminotransferase
3251	 62.52	0	3886801..3887355	-	184	122879279	-	XOO3625	-	hypothetical protein
3252	 69.38	+1	3887482..3887961	+	159	58583249	-	XOO3626	-	hypothetical protein
3253	 58.33	-1	3888491..3888862	+	123	58583250	-	XOO3627	-	putative transposase
3254	 64.25	0	3889218..3890705	-	495	58583252	pntB	XOO3629	-	pyridine nucleotide transhydrogenase subunit beta
3255	 63.48	0	3890702..3891046	-	114	58583253	pntA	XOO3630	-	pyridine nucleotide transhydrogenase subunit alpha
3256	 68.88	+1	3891029..3891706	+	225	58583254	-	XOO3631	-	RNA polymerase factor sigma-70
3257	 72.08	+2	3891703..3892053	+	116	58583255	-	XOO3632	-	hypothetical protein
3258	 65.77	0	3892209..3892544	+	111	121632127	-	YXOOp11	-	hypothetical protein
3259	 68.33	+1	3892942..3894141	-	399	58583256	pntA	XOO3633	-	pyridine nucleotide transhydrogenase
3260	 62.92	0	3894232..3895593	-	453	58583257	-	XOO3634	-	putative ISXo8 transposase
3261	 60.77	0	3895787..3896719	-	310	58583258	-	XOO3635	-	putative transposase
3262	 65.43	0	3896822..3899161	-	779	122879280	-	XOO3636	-	hypothetical protein
3263	 67.51	+1	3899397..3900104	+	235	58583260	-	XOO3637	-	hypothetical protein
3264	 65.45	0	3900101..3901087	+	328	58583261	exo	XOO3638	-	exodeoxyribonuclease IX
3265	 64.49	0	3901084..3901635	+	183	58583262	-	XOO3639	-	MutT-like protein
3266	 64.66	0	3901616..3902413	+	265	58583263	-	XOO3640	-	hypothetical protein
3267	 62.74	0	3902615..3903556	-	313	58583265	pip	XOO3642	-	proline imino-peptidase, chain A
3268	 66.06	0	3904452..3904778	-	108	121632128	-	YXOOp12	-	hypothetical protein
3269	 63.91	0	3904822..3905220	-	132	58583266	-	XOO3643	-	hypothetical protein
3270	 69.27	+1	3905458..3906303	-	281	58583267	hemK	XOO3644	-	protoporphyrinogen oxidase
3271	 61.17	0	3906505..3907068	+	187	58583268	ahpC	XOO3645	-	alkyl hydroperoxide reductase subunit C
3272	 64.00	0	3907210..3908856	+	548	58583269	ahpF	XOO3646	-	alkyl hydroperoxide reductase subunit F
3273	 63.38	0	3908948..3909889	+	313	58583270	oxyR	XOO3647	-	oxidative stress transcriptional regulator
3274	 67.59	+1	3910316..3910747	+	143	122879281	rnk	XOO3648	-	regulator of nucleoside diphosphate kinase
3275	 64.71	0	3910810..3911778	+	322	58583272	talB	XOO3649	-	transaldolase B
3276	 60.63	0	3912028..3912441	+	137	58583273	-	XOO3650	-	putative ISXo8 transposase
3277	 61.35	0	3912442..3912723	-	93	58583274	-	XOO3651	-	transposase
3278	 63.07	0	3913502..3914698	+	398	58583277	-	XOO3654	-	putative ISXo8 transposase
3279	 65.11	0	3914840..3915418	+	192	58583279	-	XOO3656	-	hypothetical protein
3280	 62.16	0	3915834..3916499	-	221	58583280	pms	XOO3657	-	methionine sulfoxide reductase A
3281	 61.11	0	3916580..3917155	-	191	58583281	-	XOO3658	-	hypothetical protein
3282	 68.21	+1	3917313..3917831	+	172	58583282	-	XOO3659	-	two-component system regulatory protein
3283	 61.38	0	3917875..3918423	-	182	58583283	-	XOO3660	-	putative ISXo8 transposase
3284	 59.20	-1	3918589..3918936	-	115	58583284	-	XOO3661	-	putative transposase
3285	 56.20	-2	3918902..3919312	-	136	58583285	-	XOO3662	-	putative transposase
3286	 64.65	0	3919409..3919804	-	131	58583286	-	XOO3663	-	hypothetical protein
3287	 63.14	0	3919801..3920169	-	122	58583287	grxC	XOO3664	-	glutaredoxin
3288	 67.03	0	3920259..3921905	+	548	122879282	-	XOO3665	-	hypothetical protein
3289	 66.09	0	3922086..3922775	+	229	58583289	phoB	XOO3666	-	two-component system regulatory protein
3290	 66.37	0	3922833..3924176	+	447	58583290	phoR	XOO3667	-	two-component system sensor protein
3291	 64.10	0	3924292..3926394	+	700	122879283	ppk	XOO3668	-	polyphosphate kinase
3292	 65.68	0	3926467..3928092	+	541	58583292	ppx	XOO3669	-	exopolyphosphatase
3293	 64.56	0	3928297..3929433	+	378	58583293	gtrB	XOO3670	-	glycosyl transferase
3294	 66.48	0	3929414..3929956	+	180	58583294	-	XOO3671	-	hypothetical protein
3295	 66.26	0	3930604..3931347	+	247	58583295	-	XOO3672	-	UDP-2,3-diacylglucosamine hydrolase
3296	 64.52	0	3931527..3931946	-	139	122879284	-	XOO3673	-	hypothetical protein
3297	 64.76	0	3933015..3933851	-	278	58583297	-	XOO3674	-	hypothetical protein
3298	 63.74	0	3933978..3935444	-	488	58583298	purF	XOO3675	-	amidophosphoribosyltransferase
3299	 66.12	0	3935680..3936228	-	182	58583300	cvpA	XOO3677	-	colicin V production protein
3300	 69.62	+1	3936437..3937519	-	360	58583301	-	XOO3678	-	hypothetical protein
3301	 67.09	0	3937587..3939002	-	471	58583302	folC	XOO3679	-	folylpolyglutamate synthase; dihydrofolate synthase
3302	 67.09	0	3939857..3940561	-	234	58583303	pgmA	XOO3680	-	phosphoglycerate mutase
3303	 65.55	0	3940593..3942827	-	744	58583304	-	XOO3681	-	hypothetical protein
3304	 63.18	0	3942989..3944965	-	658	58583305	-	XOO3682	-	non-hemolytic phospholipase C
3305	 63.23	0	3944871..3947288	+	805	58583306	fecA	XOO3683	-	TonB-dependent receptor
3306	 62.22	0	3947791..3948825	+	344	58583307	tdh	XOO3684	-	L-threonine 3-dehydrogenase
3307	 60.64	0	3948895..3949608	-	237	58583308	-	XOO3685	-	hypothetical protein
3308	 66.47	0	3949962..3951002	-	346	58583309	cysA	XOO3686	-	sulfate ABC transporter ATP-binding protein
3309	 63.10	0	3951004..3951957	-	317	58583311	cysW	XOO3688	-	ABC transporter sulfate permease
3310	 64.00	0	3951954..3952814	-	286	58583312	cysU	XOO3689	-	ABC transporter sulfate permease
3311	 63.66	0	3952818..3953915	-	365	58583313	sbp	XOO3690	-	ABC transporter sulfate binding protein
3312	 64.35	0	3954006..3955214	+	402	161898966	kbl	XOO3691	-	2-amino-3-ketobutyrate coenzyme A ligase
3313	 67.94	+1	3955560..3956420	-	286	58583316	-	XOO3693	-	pseudouridylate synthase
3314	 67.45	+1	3956440..3956949	-	169	58583317	-	XOO3694	-	hypothetical protein
3315	 61.11	0	3957682..3958239	-	185	58583319	mopB	XOO3696	-	outer membrane protein
3316	 64.81	0	3958655..3959677	+	340	58583320	-	XOO3697	-	oxidoreductase
3317	 66.47	0	3959885..3961924	+	679	58583321	fadH	XOO3698	-	2,4-dienoyl-CoA reductase
3318	 66.52	0	3962023..3963393	+	456	58583322	-	XOO3699	-	hypothetical protein
3319	 63.17	0	3964000..3964485	+	161	58583324	-	XOO3701	-	IS1404 transposase
3320	 57.86	-1	3966483..3966902	+	139	58583330	-	XOO3707	-	putative transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.