IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3183	 61.16	0	3821859..3822857	+	332	122879271	-	XOO3550	-	hypothetical protein
3184	 60.84	0	3822944..3823939	+	331	122879272	-	XOO3551	-	hypothetical protein
3185	 63.65	0	3824259..3825185	-	308	58583175	-	XOO3552	-	IS1404 transposase
3186	 62.13	0	3825340..3826308	-	322	58583176	-	XOO3553	-	hypothetical protein
3187	 54.81	-2	3826426..3826872	+	148	58583177	-	XOO3554	-	transposase
3188	 63.39	0	3827389..3828456	+	355	58583179	-	XOO3556	-	putative transposase
3189	 62.50	0	3828590..3828973	-	127	58583180	rplQ	XOO3557	-	50S ribosomal protein L17
3190	 61.96	0	3829155..3830153	-	332	58583181	rpoA	XOO3558	-	DNA-directed RNA polymerase subunit alpha
3191	 59.97	-1	3830207..3830833	-	208	58583182	rpsD	XOO3559	-	30S ribosomal protein S4
3192	 61.62	0	3831252..3831608	-	118	122879273	rpsM	XOO3561	-	30S ribosomal protein S13
3193	 59.78	-1	3831941..3833305	-	454	58583185	secY	XOO3562	-	preprotein translocase subunit SecY
3194	 63.06	0	3833313..3833756	-	147	161898969	rplO	XOO3563	-	50S ribosomal protein L15
3195	 58.33	-1	3833761..3833952	-	63	58583187	rpmD	XOO3564	-	50S ribosomal protein L30
3196	 62.80	0	3833945..3834487	-	180	58583189	rpsE	XOO3566	-	30S ribosomal protein S5
3197	 63.89	0	3834646..3835005	-	119	161898968	rplR	XOO3567	-	50S ribosomal protein L18
3198	 61.74	0	3835094..3835621	-	175	58583191	rplF	XOO3568	-	50S ribosomal protein L6
3199	 59.15	-1	3836241..3836546	-	101	58583192	rpsN	XOO3569	-	30S ribosomal protein S14
3200	 56.54	-2	3836565..3837107	-	180	58583193	rplE	XOO3570	-	50S ribosomal protein L5
3201	 61.01	0	3837119..3837436	-	105	58583194	rplX	XOO3571	-	50S ribosomal protein L24
3202	 60.16	-1	3837452..3837820	-	122	58583196	rplN	XOO3573	-	50S ribosomal protein L14
3203	 57.04	-1	3837835..3838104	-	89	58583197	rpsQ	XOO3574	-	30S ribosomal protein S17
3204	 59.68	-1	3838116..3838301	-	61	58583198	rpmC	XOO3575	-	50S ribosomal protein L29
3205	 61.84	0	3838301..3838714	-	137	58583199	rplP	XOO3576	-	50S ribosomal protein L16
3206	 59.86	-1	3838720..3839454	-	244	58583200	rpsC	XOO3577	-	30S ribosomal protein S3
3207	 58.77	-1	3839472..3839813	-	113	58583201	rplV	XOO3578	-	50S ribosomal protein L22
3208	 56.30	-2	3839820..3840089	-	89	58583202	rpsS	XOO3579	-	30S ribosomal protein S19
3209	 63.41	0	3840096..3840923	-	275	58583203	rplB	XOO3580	-	50S ribosomal protein L2
3210	 61.06	0	3841230..3841835	-	201	122879274	rplD	XOO3582	-	50S ribosomal protein L4
3211	 61.60	0	3841848..3842498	-	216	58583207	rplC	XOO3584	-	50S ribosomal protein L3
3212	 62.30	0	3844606..3845796	-	396	58583210	tufB	XOO3587	-	elongation factor Tu
3213	 61.00	0	3845846..3847963	-	705	161898967	fusA	XOO3588	-	elongation factor G
3214	 58.55	-1	3848102..3848569	-	155	121632125	-	YXOOp09	-	30S ribosomal protein S7
3215	 61.60	0	3848582..3848956	-	124	122879275	rpsL	XOO3589	-	30S ribosomal protein S12
3216	 62.75	0	3849175..3853392	-	1405	58583213	rpoC	XOO3590	-	DNA-directed RNA polymerase subunit beta'
3217	 61.75	0	3853543..3857694	-	1383	58583214	rpoB	XOO3591	-	DNA-directed RNA polymerase subunit beta
3218	 60.16	-1	3857991..3858359	-	122	58583215	rplL	XOO3592	-	50S ribosomal protein L7/L12
3219	 64.23	0	3858414..3858947	-	177	58583216	rplJ	XOO3593	-	50S ribosomal protein L10
3220	 64.38	0	3859493..3860191	-	232	58583217	rplA	XOO3594	-	50S ribosomal protein L1
3221	 60.37	0	3860195..3860623	-	142	58583219	rplK	XOO3596	-	50S ribosomal protein L11
3222	 58.50	-1	3860820..3861431	-	203	58583220	nusG	XOO3597	-	transcription antitermination protein NusG
3223	 55.47	-2	3861391..3861801	-	136	58583221	secE	XOO3598	-	preprotein translocase subunit SecE
3224	 62.30	0	3862032..3863222	-	396	58583222	tufB	XOO3599	-	elongation factor Tu
3225	 62.09	0	3863722..3864813	-	363	58583223	ychF	XOO3600	-	translation-associated GTPase
3226	 63.08	0	3864888..3865472	-	194	122879276	pth	XOO3601	-	peptidyl-tRNA hydrolase
3227	 60.22	-1	3865524..3866159	-	211	58583225	rplY	XOO3602	-	50S ribosomal protein L25/general stress protein Ctc
3228	 63.40	0	3866269..3867309	-	346	58583226	-	XOO3603	-	ribose-phosphate pyrophosphokinase
3229	 66.44	0	3867436..3868323	-	295	58583227	ipk	XOO3604	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
3230	 69.57	+1	3868305..3868958	-	217	58583228	lolB	XOO3605	-	outer membrane lipoprotein LolB
3231	 68.02	+1	3868955..3870652	-	565	58583229	-	XOO3606	-	hypothetical protein
3232	 66.44	0	3870709..3872007	+	432	58583230	hemA	XOO3607	-	glutamyl-tRNA reductase
3233	 65.38	0	3871985..3873070	+	361	58583231	prfA	XOO3608	-	peptide chain release factor 1
3234	 65.85	0	3873067..3874773	+	568	58583232	-	XOO3609	-	hypothetical protein
3235	 62.81	0	3875239..3875757	+	172	58583233	moaB	XOO3610	-	molybdopterin biosynthesis protein B
3236	 61.81	0	3875790..3876572	+	260	58583234	-	XOO3611	-	transcriptional regulator
3237	 68.70	+1	3876554..3877783	-	409	58583235	-	XOO3612	-	hypothetical protein
3238	 71.11	+2	3877869..3878138	-	89	58583236	acyP	XOO3613	-	acylphosphatase
3239	 68.33	+1	3878135..3878737	-	200	58583237	yneN	XOO3614	-	thioredoxin
3240	 64.55	0	3878734..3880011	-	425	58583238	rbn	XOO3615	-	fused ribonuclease BN/uncharacterized domain-containing protein
3241	 70.79	+1	3880430..3880720	+	96	58583240	-	XOO3617	-	tryptophan repressor binding protein
3242	 68.12	+1	3880717..3881268	+	183	122879277	-	XOO3616	-	tryptophan repressor binding protein
3243	 62.66	0	3881275..3882447	-	390	58583241	-	XOO3618	-	xylanase
3244	 60.91	0	3883009..3883494	+	161	122879278	aspG	XOO3619	-	asparaginase
3245	 65.70	0	3883499..3883912	+	137	58583243	-	XOO3620	-	transcriptional regulator
3246	 64.72	0	3884180..3885460	-	426	58583244	-	XOO3621	-	extracellular protease
3247	 69.93	+1	3884521..3884673	-	50	58583245	-	XOO3622	-	extracellular protease
3248	 64.53	0	3884686..3884919	-	77	58583246	-	XOO3623	-	extracellular protease
3249	 66.28	0	3885054..3885311	+	85	121632126	-	YXOOp10	-	hypothetical protein
3250	 65.47	0	3885651..3886736	-	361	58583247	ilvE	XOO3624	-	branched-chain amino acid aminotransferase
3251	 62.52	0	3886801..3887355	-	184	122879279	-	XOO3625	-	hypothetical protein
3252	 69.38	+1	3887482..3887961	+	159	58583249	-	XOO3626	-	hypothetical protein
3253	 58.33	-1	3888491..3888862	+	123	58583250	-	XOO3627	-	putative transposase
3254	 64.25	0	3889218..3890705	-	495	58583252	pntB	XOO3629	-	pyridine nucleotide transhydrogenase subunit beta
3255	 63.48	0	3890702..3891046	-	114	58583253	pntA	XOO3630	-	pyridine nucleotide transhydrogenase subunit alpha
3256	 68.88	+1	3891029..3891706	+	225	58583254	-	XOO3631	-	RNA polymerase factor sigma-70
3257	 72.08	+2	3891703..3892053	+	116	58583255	-	XOO3632	-	hypothetical protein
3258	 65.77	0	3892209..3892544	+	111	121632127	-	YXOOp11	-	hypothetical protein
3259	 68.33	+1	3892942..3894141	-	399	58583256	pntA	XOO3633	-	pyridine nucleotide transhydrogenase
3260	 62.92	0	3894232..3895593	-	453	58583257	-	XOO3634	-	putative ISXo8 transposase
3261	 60.77	0	3895787..3896719	-	310	58583258	-	XOO3635	-	putative transposase
3262	 65.43	0	3896822..3899161	-	779	122879280	-	XOO3636	-	hypothetical protein
3263	 67.51	+1	3899397..3900104	+	235	58583260	-	XOO3637	-	hypothetical protein
3264	 65.45	0	3900101..3901087	+	328	58583261	exo	XOO3638	-	exodeoxyribonuclease IX
3265	 64.49	0	3901084..3901635	+	183