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Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439 4144 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3168 57.36 -1 3800534..3800791 + 85 58583155 minE XOO3532 - cell division topological specificity factor MinE 3169 64.86 0 3800854..3801351 + 165 58583156 - XOO3533 - hypothetical protein 3170 65.24 0 3801503..3802831 - 442 58583157 colS XOO3534 - two-component system sensor protein 3171 66.56 0 3802788..3803711 - 307 58583158 colR XOO3535 - two-component system regulatory protein 3172 67.01 0 3803729..3805456 + 575 122879270 - XOO3536 - hypothetical protein 3173 62.47 0 3805535..3806320 + 261 58583160 - XOO3537 - hypothetical protein 3174 62.72 0 3806317..3807987 + 556 58583161 yjdB XOO3538 - inner membrane protein 3175 63.46 0 3808057..3810117 + 686 58583162 - XOO3539 - dipeptidyl carboxypeptidase 3176 66.67 0 3810199..3810603 - 134 58583163 - XOO3540 - hypothetical protein 3177 65.72 0 3811945..3814164 - 739 58583166 raxB XOO3543 - putative ABC transporter protein RaxB 3178 69.85 +1 3814101..3815420 - 439 58583167 raxA XOO3544 - putative membrane fusion protein RaxA 3179 68.93 +1 3816075..3816605 - 176 58583169 raxST XOO3546 - putative sulfotransferase RaxST 3180 65.41 0 3817279..3820308 + 1009 58583170 gcvP XOO3547 - glycine dehydrogenase 3181 70.89 +2 3820638..3821087 + 149 58583171 - XOO3548 - hypothetical protein 3182 64.51 0 3821084..3821779 + 231 58583172 - XOO3549 - hypothetical protein 3183 61.16 0 3821859..3822857 + 332 122879271 - XOO3550 - hypothetical protein 3184 60.84 0 3822944..3823939 + 331 122879272 - XOO3551 - hypothetical protein 3185 63.65 0 3824259..3825185 - 308 58583175 - XOO3552 - IS1404 transposase 3186 62.13 0 3825340..3826308 - 322 58583176 - XOO3553 - hypothetical protein 3187 54.81 -2 3826426..3826872 + 148 58583177 - XOO3554 - transposase 3188 63.39 0 3827389..3828456 + 355 58583179 - XOO3556 - putative transposase 3189 62.50 0 3828590..3828973 - 127 58583180 rplQ XOO3557 - 50S ribosomal protein L17 3190 61.96 0 3829155..3830153 - 332 58583181 rpoA XOO3558 - DNA-directed RNA polymerase subunit alpha 3191 59.97 -1 3830207..3830833 - 208 58583182 rpsD XOO3559 - 30S ribosomal protein S4 3192 61.62 0 3831252..3831608 - 118 122879273 rpsM XOO3561 - 30S ribosomal protein S13 3193 59.78 -1 3831941..3833305 - 454 58583185 secY XOO3562 - preprotein translocase subunit SecY 3194 63.06 0 3833313..3833756 - 147 161898969 rplO XOO3563 - 50S ribosomal protein L15 3195 58.33 -1 3833761..3833952 - 63 58583187 rpmD XOO3564 - 50S ribosomal protein L30 3196 62.80 0 3833945..3834487 - 180 58583189 rpsE XOO3566 - 30S ribosomal protein S5 3197 63.89 0 3834646..3835005 - 119 161898968 rplR XOO3567 - 50S ribosomal protein L18 3198 61.74 0 3835094..3835621 - 175 58583191 rplF XOO3568 - 50S ribosomal protein L6 3199 59.15 -1 3836241..3836546 - 101 58583192 rpsN XOO3569 - 30S ribosomal protein S14 3200 56.54 -2 3836565..3837107 - 180 58583193 rplE XOO3570 - 50S ribosomal protein L5 3201 61.01 0 3837119..3837436 - 105 58583194 rplX XOO3571 - 50S ribosomal protein L24 3202 60.16 -1 3837452..3837820 - 122 58583196 rplN XOO3573 - 50S ribosomal protein L14 3203 57.04 -1 3837835..3838104 - 89 58583197 rpsQ XOO3574 - 30S ribosomal protein S17 3204 59.68 -1 3838116..3838301 - 61 58583198 rpmC XOO3575 - 50S ribosomal protein L29 3205 61.84 0 3838301..3838714 - 137 58583199 rplP XOO3576 - 50S ribosomal protein L16 3206 59.86 -1 3838720..3839454 - 244 58583200 rpsC XOO3577 - 30S ribosomal protein S3 3207 58.77 -1 3839472..3839813 - 113 58583201 rplV XOO3578 - 50S ribosomal protein L22 3208 56.30 -2 3839820..3840089 - 89 58583202 rpsS XOO3579 - 30S ribosomal protein S19 3209 63.41 0 3840096..3840923 - 275 58583203 rplB XOO3580 - 50S ribosomal protein L2 3210 61.06 0 3841230..3841835 - 201 122879274 rplD XOO3582 - 50S ribosomal protein L4 3211 61.60 0 3841848..3842498 - 216 58583207 rplC XOO3584 - 50S ribosomal protein L3 3212 62.30 0 3844606..3845796 - 396 58583210 tufB XOO3587 - elongation factor Tu 3213 61.00 0 3845846..3847963 - 705 161898967 fusA XOO3588 - elongation factor G 3214 58.55 -1 3848102..3848569 - 155 121632125 - YXOOp09 - 30S ribosomal protein S7 3215 61.60 0 3848582..3848956 - 124 122879275 rpsL XOO3589 - 30S ribosomal protein S12 3216 62.75 0 3849175..3853392 - 1405 58583213 rpoC XOO3590 - DNA-directed RNA polymerase subunit beta' 3217 61.75 0 3853543..3857694 - 1383 58583214 rpoB XOO3591 - DNA-directed RNA polymerase subunit beta 3218 60.16 -1 3857991..3858359 - 122 58583215 rplL XOO3592 - 50S ribosomal protein L7/L12 3219 64.23 0 3858414..3858947 - 177 58583216 rplJ XOO3593 - 50S ribosomal protein L10 3220 64.38 0 3859493..3860191 - 232 58583217 rplA XOO3594 - 50S ribosomal protein L1 3221 60.37 0 3860195..3860623 - 142 58583219 rplK XOO3596 - 50S ribosomal protein L11 3222 58.50 -1 3860820..3861431 - 203 58583220 nusG XOO3597 - transcription antitermination protein NusG 3223 55.47 -2 3861391..3861801 - 136 58583221 secE XOO3598 - preprotein translocase subunit SecE 3224 62.30 0 3862032..3863222 - 396 58583222 tufB XOO3599 - elongation factor Tu 3225 62.09 0 3863722..3864813 - 363 58583223 ychF XOO3600 - translation-associated GTPase 3226 63.08 0 3864888..3865472 - 194 122879276 pth XOO3601 - peptidyl-tRNA hydrolase 3227 60.22 -1 3865524..3866159 - 211 58583225 rplY XOO3602 - 50S ribosomal protein L25/general stress protein Ctc 3228 63.40 0 3866269..3867309 - 346 58583226 - XOO3603 - ribose-phosphate pyrophosphokinase 3229 66.44 0 3867436..3868323 - 295 58583227 ipk XOO3604 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 3230 69.57 +1 3868305..3868958 - 217 58583228 lolB XOO3605 - outer membrane lipoprotein LolB 3231 68.02 +1 3868955..3870652 - 565 58583229 - XOO3606 - hypothetical protein 3232 66.44 0 3870709..3872007 + 432 58583230 hemA XOO3607 - glutamyl-tRNA reductase 3233 65.38 0 3871985..3873070 + 361 58583231 prfA XOO3608 - peptide chain release factor 1 3234 65.85 0 3873067..3874773 + 568 58583232 - XOO3609 - hypothetical protein 3235 62.81 0 3875239..3875757 + 172 58583233 moaB XOO3610 - molybdopterin biosynthesis protein B 3236 61.81 0 3875790..3876572 + 260 58583234 - XOO3611 - transcriptional regulator 3237 68.70 +1 3876554..3877783 - 409 58583235 - XOO3612 - hypothetical protein 3238 71.11 +2 3877869..3878138 - 89 58583236 acyP XOO3613 - acylphosphatase 3239 68.33 +1 3878135..3878737 - 200 58583237 yneN XOO3614 - thioredoxin 3240 64.55 0 3878734..3880011 - 425 58583238 rbn XOO3615 - fused ribonuclease BN/uncharacterized domain-containing protein 3241 70.79 +1 3880430..3880720 + 96 58583240 - XOO3617 - tryptophan repressor binding protein 3242 68.12 +1 3880717..3881268 + 183 122879277 - XOO3616 - tryptophan repressor binding protein 3243 62.66 0 3881275..3882447 - 390 58583241 - XOO3618 - xylanase 3244 60.91 0 3883009..3883494 + 161 122879278 aspG XOO3619 - asparaginase 3245 65.70 0 3883499..3883912 + 137 58583243 - XOO3620 - transcriptional regulator 3246 64.72 0 3884180..3885460 - 426 58583244 - XOO3621 - extracellular protease 3247 69.93 +1 3884521..3884673 - 50 58583245 - XOO3622 - extracellular protease 3248 64.53 0 3884686..3884919 - 77 58583246 - XOO3623 - extracellular protease 3249 66.28 0 3885054..3885311 + 85 121632126 - YXOOp10 - hypothetical protein 3250 65.47 0 3885651..3886736 - 361 58583247 ilvE XOO3624 - branched-chain amino acid aminotransferase 3251 62.52 0 3886801..3887355 - 184 122879279 - XOO3625 - hypothetical protein 3252 69.38 +1 3887482..3887961 + 159 58583249 - XOO3626 - hypothetical protein 3253 58.33 -1 3888491..3888862 + 123 58583250 - XOO3627 - putative transposase 3254 64.25 0 3889218..3890705 - 495 58583252 pntB XOO3629 - pyridine nucleotide transhydrogenase subunit beta 3255 63.48 0 3890702..3891046 - 114 58583253 pntA XOO3630 - pyridine nucleotide transhydrogenase subunit alpha 3256 68.88 +1 3891029..3891706 + 225 58583254 - XOO3631 - RNA polymerase factor sigma-70 3257 72.08 +2 3891703..3892053 + 116 58583255 - XOO3632 - hypothetical protein 3258 65.77 0 3892209..3892544 + 111 121632127 - YXOOp11 - hypothetical protein 3259 68.33 +1 3892942..3894141 - 399 58583256 pntA XOO3633 - pyridine nucleotide transhydrogenase 3260 62.92 0 3894232..3895593 - 453 58583257 - XOO3634 - putative ISXo8 transposase 3261 60.77 0 3895787..3896719 - 310 58583258 - XOO3635 - putative transposase 3262 65.43 0 3896822..3899161 - 779 122879280 - XOO3636 - hypothetical protein 3263 67.51 +1 3899397..3900104 + 235 58583260 - XOO3637 - hypothetical protein 3264 65.45 0 3900101..3901087 + 328 58583261 exo XOO3638 - exodeoxyribonuclease IX 3265 64.49 0 3901084..3901635 + 183 58583262 - XOO3639 - MutT-like protein 3266 64.66 0 3901616..3902413 + 265 58583263 - XOO3640 - hypothetical protein 3267 62.74 0 3902615..3903556 - 313 58583265 pip XOO3642 - proline imino-peptidase, chain A 63.81 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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