IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3125	 61.90	0	3753076..3753369	+	97	121632117	-	XOO4885	-	hypothetical protein
3126	 66.95	0	3754099..3754446	+	115	121632118	-	YXOOp04	-	hypothetical protein
3127	 65.77	0	3754541..3755431	+	296	58583116	-	XOO3493	-	hypothetical protein
3128	 66.54	0	3755428..3756219	+	263	58583117	-	XOO3494	-	hypothetical protein
3129	 74.38	+2	3756230..3757396	+	388	58583118	-	XOO3495	-	hypothetical protein
3130	 65.90	0	3758605..3758994	-	129	58583121	-	XOO3498	-	VGR-related protein
3131	 64.61	0	3758975..3761257	-	760	58583122	-	XOO3499	-	hypothetical protein
3132	 61.81	0	3761206..3761802	-	198	58583123	-	XOO3500	-	hypothetical protein
3133	 69.41	+1	3761795..3762670	-	291	58583124	-	XOO3501	-	hypothetical protein
3134	 71.32	+2	3762616..3765474	-	952	58583125	-	XOO3502	-	hypothetical protein
3135	 74.46	+2	3763083..3764609	-	508	58583126	-	XOO3503	-	VGR-related protein
3136	 70.61	+1	3764610..3765293	-	227	58583127	-	XOO3504	-	hypothetical protein
3137	 56.35	-2	3765389..3766435	+	348	58583128	-	XOO3505	-	sulfatase modifying factor 1 precursor (C-alpha-formyglycine-generating enzyme 1)
3138	 61.35	0	3766489..3769554	-	1021	58583129	-	XOO3506	-	ATPase involved in DNA repair
3139	 63.37	0	3769541..3770086	-	181	58583130	-	XOO3507	-	hypothetical protein
3140	 59.14	-1	3770168..3772000	-	610	58583131	-	XOO3508	-	hypothetical protein
3141	 55.04	-2	3771997..3772254	-	85	121632119	-	XOO4887	-	hypothetical protein
3142	 61.08	0	3772500..3772964	-	154	122879265	-	XOO3509	-	hypothetical protein
3143	 54.65	-2	3773281..3773538	-	85	121632120	-	XOO4888	-	hypothetical protein
3144	 58.47	-1	3773582..3773764	-	60	121632121	-	YXOOp05	-	hypothetical protein
3145	 60.86	0	3773785..3774249	-	154	58583133	-	XOO3510	-	hypothetical protein
3146	 62.16	0	3774246..3775199	-	317	58583134	-	XOO3511	-	hypothetical protein
3147	 66.85	0	3778907..3779968	+	353	58583137	-	XOO3514	-	hypothetical protein
3148	 66.30	0	3780021..3780833	-	270	122879266	-	XOO3515	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins
3149	 65.75	0	3780836..3781819	-	327	58583139	-	XOO3516	-	hypothetical protein
3150	 65.30	0	3781816..3785553	-	1245	58583140	-	XOO3517	-	hypothetical protein
3151	 70.72	+1	3785569..3787050	-	493	121632122	-	YXOOp06	-	hypothetical protein
3152	 69.17	+1	3787480..3788358	-	292	122879267	-	XOO3518	-	hypothetical protein
3153	 67.59	+1	3789356..3789463	-	35	121632123	-	YXOOp07	-	hypothetical protein
3154	 62.01	0	3789579..3790115	+	178	121632124	-	YXOOp08	-	IS1246, transposase
3155	 66.06	0	3790315..3791628	-	437	58583142	purT	XOO3519	-	phosphoribosylglycinamide formyltransferase 2
3156	 62.16	0	3791726..3792124	+	132	122879268	-	XOO3520	-	hypothetical protein
3157	 65.96	0	3792134..3792418	+	94	58583144	-	XOO3521	-	hypothetical protein
3158	 62.78	0	3792415..3792594	+	59	58583145	-	XOO3522	-	hypothetical protein
3159	 66.42	0	3792725..3793522	+	265	58583146	-	XOO3523	-	hypothetical protein
3160	 67.26	0	3793586..3794260	-	224	58583147	-	XOO3524	-	DNA-3-methyladenine glycosylase
3161	 64.69	0	3794263..3794667	-	134	58583148	-	XOO3525	-	hypothetical protein
3162	 59.90	-1	3794731..3795912	-	393	58583149	-	XOO3526	-	hypothetical protein
3163	 64.81	0	3796263..3796907	-	214	58583150	-	XOO3527	-	two-component system regulatory protein
3164	 66.25	0	3796904..3798100	-	398	58583151	-	XOO3528	-	two-component system sensor protein
3165	 62.65	0	3798345..3798941	+	198	122879269	-	XOO3529	-	hypothetical protein
3166	 67.18	0	3798907..3799686	+	259	58583153	minC	XOO3530	-	septum formation inhibitor
3167	 62.90	0	3799683..3800531	+	282	58583154	minD	XOO3531	-	septum site-determining protein
3168	 57.36	-1	3800534..3800791	+	85	58583155	minE	XOO3532	-	cell division topological specificity factor MinE
3169	 64.86	0	3800854..3801351	+	165	58583156	-	XOO3533	-	hypothetical protein
3170	 65.24	0	3801503..3802831	-	442	58583157	colS	XOO3534	-	two-component system sensor protein
3171	 66.56	0	3802788..3803711	-	307	58583158	colR	XOO3535	-	two-component system regulatory protein
3172	 67.01	0	3803729..3805456	+	575	122879270	-	XOO3536	-	hypothetical protein
3173	 62.47	0	3805535..3806320	+	261	58583160	-	XOO3537	-	hypothetical protein
3174	 62.72	0	3806317..3807987	+	556	58583161	yjdB	XOO3538	-	inner membrane protein
3175	 63.46	0	3808057..3810117	+	686	58583162	-	XOO3539	-	dipeptidyl carboxypeptidase
3176	 66.67	0	3810199..3810603	-	134	58583163	-	XOO3540	-	hypothetical protein
3177	 65.72	0	3811945..3814164	-	739	58583166	raxB	XOO3543	-	putative ABC transporter protein RaxB
3178	 69.85	+1	3814101..3815420	-	439	58583167	raxA	XOO3544	-	putative membrane fusion protein RaxA
3179	 68.93	+1	3816075..3816605	-	176	58583169	raxST	XOO3546	-	putative sulfotransferase RaxST
3180	 65.41	0	3817279..3820308	+	1009	58583170	gcvP	XOO3547	-	glycine dehydrogenase
3181	 70.89	+2	3820638..3821087	+	149	58583171	-	XOO3548	-	hypothetical protein
3182	 64.51	0	3821084..3821779	+	231	58583172	-	XOO3549	-	hypothetical protein
3183	 61.16	0	3821859..3822857	+	332	122879271	-	XOO3550	-	hypothetical protein
3184	 60.84	0	3822944..3823939	+	331	122879272	-	XOO3551	-	hypothetical protein
3185	 63.65	0	3824259..3825185	-	308	58583175	-	XOO3552	-	IS1404 transposase
3186	 62.13	0	3825340..3826308	-	322	58583176	-	XOO3553	-	hypothetical protein
3187	 54.81	-2	3826426..3826872	+	148	58583177	-	XOO3554	-	transposase
3188	 63.39	0	3827389..3828456	+	355	58583179	-	XOO3556	-	putative transposase
3189	 62.50	0	3828590..3828973	-	127	58583180	rplQ	XOO3557	-	50S ribosomal protein L17
3190	 61.96	0	3829155..3830153	-	332	58583181	rpoA	XOO3558	-	DNA-directed RNA polymerase subunit alpha
3191	 59.97	-1	3830207..3830833	-	208	58583182	rpsD	XOO3559	-	30S ribosomal protein S4
3192	 61.62	0	3831252..3831608	-	118	122879273	rpsM	XOO3561	-	30S ribosomal protein S13
3193	 59.78	-1	3831941..3833305	-	454	58583185	secY	XOO3562	-	preprotein translocase subunit SecY
3194	 63.06	0	3833313..3833756	-	147	161898969	rplO	XOO3563	-	50S ribosomal protein L15
3195	 58.33	-1	3833761..3833952	-	63	58583187	rpmD	XOO3564	-	50S ribosomal protein L30
3196	 62.80	0	3833945..3834487	-	180	58583189	rpsE	XOO3566	-	30S ribosomal protein S5
3197	 63.89	0	3834646..3835005	-	119	161898968	rplR	XOO3567	-	50S ribosomal protein L18
3198	 61.74	0	3835094..3835621	-	175	58583191	rplF	XOO3568	-	50S ribosomal protein L6
3199	 59.15	-1	3836241..3836546	-	101	58583192	rpsN	XOO3569	-	30S ribosomal protein S14
3200	 56.54	-2	3836565..3837107	-	180	58583193	rplE	XOO3570	-	50S ribosomal protein L5
3201	 61.01	0	3837119..3837436	-	105	58583194	rplX	XOO3571	-	50S ribosomal protein L24
3202	 60.16	-1	3837452..3837820	-	122	58583196	rplN	XOO3573	-	50S ribosomal protein L14
3203	 57.04	-1	3837835..3838104	-	89	58583197	rpsQ	XOO3574	-	30S ribosomal protein S17
3204	 59.68	-1	3838116..3838301	-	61	58583198	rpmC	XOO3575	-	50S ribosomal protein L29
3205	 61.84	0	3838301..3838714	-	137	58583199	rplP	XOO3576	-	50S ribosomal protein L16
3206	 59.86	-1	3838720..3839454	-	244	58583200	rpsC	XOO3577	-	30S ribosomal protein S3
3207	 58.77	-1	3839472..3839813	-	113