IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3088	 53.45	-2	3693324..3693497	-	57	58583077	-	XOO3454	-	hypothetical protein
3089	 61.20	0	3695506..3697443	-	645	58583080	hsdM-1	XOO3457	-	type I restriction system adenine methylase
3090	 57.56	-1	3697338..3698402	-	354	58583081	-	XOO3458	-	hypothetical protein
3091	 57.61	-1	3698383..3698691	-	102	58583082	-	XOO3459	-	hypothetical protein
3092	 63.45	0	3698698..3699039	-	113	58583083	-	XOO3460	-	hypothetical protein
3093	 65.97	0	3699193..3702765	+	1190	58583084	hsdR	XOO3461	-	type I restriction enzyme EcoKI subunit R
3094	 60.96	0	3702677..3703903	+	408	58583085	-	XOO3462	-	abortive infection bacteriophage resistance protein
3095	 64.79	0	3703950..3705494	+	514	58583086	hsdM-2	XOO3463	-	type I restriction-modification system, M subunit
3096	 56.56	-2	3705472..3706866	+	464	58583087	-	XOO3464	-	Type I restriction enzyme StySPI specificity protein
3097	 65.05	0	3706900..3707208	-	102	58583088	-	XOO3465	-	hypothetical protein
3098	 66.29	0	3707215..3707478	-	87	121632114	-	YXOOp02	-	hypothetical protein
3099	 67.99	+1	3708207..3708962	+	251	58583089	-	XOO3466	-	hypothetical protein
3100	 53.96	-2	3709256..3710278	-	340	58583090	-	XOO3467	-	hypothetical protein
3101	 64.19	0	3710288..3713155	-	955	58583091	-	XOO3468	-	hypothetical protein
3102	 55.59	-2	3716033..3718045	-	670	58583095	-	XOO3472	-	hypothetical protein
3103	 65.87	0	3719245..3720123	-	292	121632115	-	XOO4882	-	hypothetical protein
3104	 73.26	+2	3720130..3721191	-	353	122879263	-	XOO3473	-	hypothetical protein
3105	 72.26	+2	3721305..3722894	-	529	58583097	-	XOO3474	-	hypothetical protein
3106	 66.38	0	3722987..3723340	-	117	121632116	-	YXOOp03	-	hypothetical protein
3107	 68.06	+1	3723371..3726100	-	909	58583098	clpB	XOO3475	-	ClpB
3108	 68.04	+1	3726186..3727277	-	363	58583099	-	XOO3476	-	hypothetical protein
3109	 65.96	0	3727241..3729076	-	611	58583100	-	XOO3477	-	hypothetical protein
3110	 62.17	0	3729079..3729567	-	162	58583101	-	XOO3478	-	hypothetical protein
3111	 59.44	-1	3729715..3730212	-	165	58583102	hcp	XOO3479	-	hypothetical protein
3112	 61.46	0	3730354..3731850	-	498	58583103	-	XOO3480	-	hypothetical protein
3113	 58.88	-1	3731854..3732354	-	166	58583104	-	XOO3481	-	hypothetical protein
3114	 67.48	+1	3732401..3733015	-	204	58583105	-	XOO3482	-	hypothetical protein
3115	 65.75	0	3733231..3733884	+	217	58583106	-	XOO3483	-	putative transmembrane protein
3116	 65.39	0	3734036..3735370	+	444	122879264	-	XOO3484	-	hypothetical protein
3117	 66.54	0	3735367..3736158	+	263	58583108	-	XOO3485	-	hypothetical protein
3118	 73.60	+2	3736169..3738706	+	845	58583109	-	XOO3486	-	hypothetical protein
3119	 58.07	-1	3738731..3741625	+	964	58583110	-	XOO3487	-	EF hand domain-containing protein
3120	 73.57	+2	3742460..3743893	+	477	58583111	-	XOO3488	-	hypothetical protein
3121	 51.29	-2	3743897..3746152	+	751	58583112	-	XOO3489	-	hypothetical protein
3122	 73.17	+2	3746714..3748975	+	753	58583113	-	XOO3490	-	hypothetical protein
3123	 63.56	0	3751166..3752389	+	407	58583114	-	XOO3491	-	ISxac1 transposase
3124	 60.93	0	3752416..3752955	+	179	58583115	-	XOO3492	-	hypothetical protein
3125	 61.90	0	3753076..3753369	+	97	121632117	-	XOO4885	-	hypothetical protein
3126	 66.95	0	3754099..3754446	+	115	121632118	-	YXOOp04	-	hypothetical protein
3127	 65.77	0	3754541..3755431	+	296	58583116	-	XOO3493	-	hypothetical protein
3128	 66.54	0	3755428..3756219	+	263	58583117	-	XOO3494	-	hypothetical protein
3129	 74.38	+2	3756230..3757396	+	388	58583118	-	XOO3495	-	hypothetical protein
3130	 65.90	0	3758605..3758994	-	129	58583121	-	XOO3498	-	VGR-related protein
3131	 64.61	0	3758975..3761257	-	760	58583122	-	XOO3499	-	hypothetical protein
3132	 61.81	0	3761206..3761802	-	198	58583123	-	XOO3500	-	hypothetical protein
3133	 69.41	+1	3761795..3762670	-	291	58583124	-	XOO3501	-	hypothetical protein
3134	 71.32	+2	3762616..3765474	-	952	58583125	-	XOO3502	-	hypothetical protein
3135	 74.46	+2	3763083..3764609	-	508	58583126	-	XOO3503	-	VGR-related protein
3136	 70.61	+1	3764610..3765293	-	227	58583127	-	XOO3504	-	hypothetical protein
3137	 56.35	-2	3765389..3766435	+	348	58583128	-	XOO3505	-	sulfatase modifying factor 1 precursor (C-alpha-formyglycine-generating enzyme 1)
3138	 61.35	0	3766489..3769554	-	1021	58583129	-	XOO3506	-	ATPase involved in DNA repair
3139	 63.37	0	3769541..3770086	-	181	58583130	-	XOO3507	-	hypothetical protein
3140	 59.14	-1	3770168..3772000	-	610	58583131	-	XOO3508	-	hypothetical protein
3141	 55.04	-2	3771997..3772254	-	85	121632119	-	XOO4887	-	hypothetical protein
3142	 61.08	0	3772500..3772964	-	154	122879265	-	XOO3509	-	hypothetical protein
3143	 54.65	-2	3773281..3773538	-	85	121632120	-	XOO4888	-	hypothetical protein
3144	 58.47	-1	3773582..3773764	-	60	121632121	-	YXOOp05	-	hypothetical protein
3145	 60.86	0	3773785..3774249	-	154	58583133	-	XOO3510	-	hypothetical protein
3146	 62.16	0	3774246..3775199	-	317	58583134	-	XOO3511	-	hypothetical protein
3147	 66.85	0	3778907..3779968	+	353	58583137	-	XOO3514	-	hypothetical protein
3148	 66.30	0	3780021..3780833	-	270	122879266	-	XOO3515	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins
3149	 65.75	0	3780836..3781819	-	327	58583139	-	XOO3516	-	hypothetical protein
3150	 65.30	0	3781816..3785553	-	1245	58583140	-	XOO3517	-	hypothetical protein
3151	 70.72	+1	3785569..3787050	-	493	121632122	-	YXOOp06	-	hypothetical protein
3152	 69.17	+1	3787480..3788358	-	292	122879267	-	XOO3518	-	hypothetical protein
3153	 67.59	+1	3789356..3789463	-	35	121632123	-	YXOOp07	-	hypothetical protein
3154	 62.01	0	3789579..3790115	+	178	121632124	-	YXOOp08	-	IS1246, transposase
3155	 66.06	0	3790315..3791628	-	437	58583142	purT	XOO3519	-	phosphoribosylglycinamide formyltransferase 2
3156	 62.16	0	3791726..3792124	+	132	122879268	-	XOO3520	-	hypothetical protein
3157	 65.96	0	3792134..3792418	+	94	58583144	-	XOO3521	-	hypothetical protein
3158	 62.78	0	3792415..3792594	+	59	58583145	-	XOO3522	-	hypothetical protein
3159	 66.42	0	3792725..3793522	+	265	58583146	-	XOO3523	-	hypothetical protein
3160	 67.26	0	3793586..3794260	-	224	58583147	-	XOO3524	-	DNA-3-methyladenine glycosylase
3161	 64.69	0	3794263..3794667	-	134	58583148	-	XOO3525	-	hypothetical protein
3162	 59.90	-1	3794731..3795912	-	393	58583149	-	XOO3526	-	hypothetical protein
3163	 64.81	0	3796263..3796907	-	214	58583150	-	XOO3527	-	two-component system regulatory protein
3164	 66.25	0	3796904..3798100	-	398	58583151	-	XOO3528	-	two-component system sensor protein
3165	 62.65	0	3798345..3798941	+	198	122879269	-	XOO3529	-	hypothetical protein
3166	 67.18	0	3798907..3799686	+	259	58583153	minC	XOO3530	-	septum formation inhibitor
3167	 62.90	0	3799683..3800531	+	282	58583154	minD	XOO3531	-	septum site-determining protein
3168	 57.36	-1	3800534..3800791	+	85	58583155	minE	XOO3532	-	cell division topological specificity factor MinE
3169	 64.86	0	3800854..3801351	+	165	58583156	-	XOO3533	-	hypothetical protein
3170	 65.24	0	3801503..3802831	-	442	58583157	colS	XOO3534	-	two-component system sensor protein
3171	 66.56	0	3802788..3803711	-	307	58583158	colR	XOO3535	-	two-component system regulatory protein
3172	 67.01	0	3803729..3805456	+	575	122879270	-	XOO3536	-	hypothetical protein
3173	 62.47	0	3805535..3806320	+	261	58583160	-	XOO3537	-	hypothetical protein
3174	 62.72	0	3806317..3807987	+	556	58583161	yjdB	XOO3538	-	inner membrane protein
3175	 63.46	0	3808057..3810117	+	686	58583162	-	XOO3539	-	dipeptidyl carboxypeptidase
3176	 66.67	0	3810199..3810603	-	134	58583163	-	XOO3540	-	hypothetical protein
3177	 65.72	0	3811945..3814164	-	739	58583166	raxB	XOO3543	-	putative ABC transporter protein RaxB
3178	 69.85	+1	3814101..3815420	-	439	58583167	raxA	XOO3544	-	putative membrane fusion protein RaxA
3179	 68.93	+1	3816075..3816605	-	176	58583169	raxST	XOO3546	-	putative sulfotransferase RaxST
3180	 65.41	0	3817279..3820308	+	1009	58583170	gcvP	XOO3547	-	glycine dehydrogenase
3181	 70.89	+2	3820638..3821087	+	149	58583171	-	XOO3548	-	hypothetical protein
3182	 64.51	0	3821084..3821779	+	231	58583172	-	XOO3549	-	hypothetical protein
3183	 61.16	0	3821859..3822857	+	332	122879271	-	XOO3550	-	hypothetical protein
3184	 60.84	0	3822944..3823939	+	331	122879272	-	XOO3551	-	hypothetical protein
3185	 63.65	0	3824259..3825185	-	308	58583175	-	XOO3552	-	IS1404 transposase
3186	 62.13	0	3825340..3826308	-	322	58583176	-	XOO3553	-	hypothetical protein
3187	 54.81	-2	3826426..3826872	+	148	58583177	-	XOO3554	-	transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.