IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2951	 67.32	+1	3524096..3524707	+	203	58582914	-	XOO3291	-	lipoprotein
2952	 66.13	0	3524817..3525566	+	249	58582915	-	XOO3292	-	hypothetical protein
2953	 64.43	0	3525774..3526265	-	163	58582916	-	XOO3293	-	acyl-CoA thioester hydrolase
2954	 63.97	0	3526512..3527030	-	172	58582917	-	XOO3294	-	hypothetical protein
2955	 62.77	0	3527379..3528788	-	469	58582918	gltT	XOO3295	-	glutamate symport protein
2956	 68.25	+1	3528843..3530549	+	568	58582919	phoA	XOO3296	-	alkaline phosphatase
2957	 67.89	+1	3530583..3531887	+	434	58582920	mesJ	XOO3297	-	cell cycle protein
2958	 62.84	0	3531919..3532179	+	86	161898970	xseB	XOO3298	-	exodeoxyribonuclease VII small subunit
2959	 66.67	0	3532181..3533056	+	291	58582922	ispA	XOO3299	-	geranyltranstransferase; farnesyl-diphosphate synthase
2960	 63.73	0	3533614..3534837	+	407	58582923	-	XOO3300	-	extracellular protease
2961	 58.97	-1	3534891..3535397	-	168	58582925	-	XOO3302	-	hypothetical protein
2962	 66.60	0	3535885..3537297	-	470	58582926	pmbA	XOO3303	-	hypothetical protein
2963	 66.15	0	3537398..3537979	+	193	58582927	-	XOO3304	-	hypothetical protein
2964	 67.84	+1	3538236..3539681	-	481	58582928	tldD	XOO3305	-	hypothetical protein
2965	 63.19	0	3539732..3540163	+	143	58582929	-	XOO3306	-	hypothetical protein
2966	 60.54	0	3540151..3541032	+	293	58582930	-	XOO3307	-	putative ISXo8 transposase
2967	 58.41	-1	3541002..3541328	+	108	58582931	-	XOO3308	-	putative transposase
2968	 58.70	-1	3541325..3541801	+	158	58582932	-	XOO3309	-	putative transposase
2969	 61.93	0	3541838..3542386	+	182	58582933	-	XOO3310	-	putative ISXo8 transposase
2970	 69.08	+1	3543015..3546779	-	1254	58582936	-	XOO3313	-	hypothetical protein
2971	 64.47	0	3546927..3548426	-	499	122879251	rng	XOO3315	-	ribonuclease G
2972	 64.73	0	3548426..3549148	-	240	58582939	maf	XOO3316	-	Maf-like protein
2973	 65.71	0	3549137..3549871	+	244	58582940	bp26	XOO3317	-	outer membrane protein
2974	 58.06	-1	3550083..3550454	+	123	58582941	-	XOO3318	-	putative transposase
2975	 58.91	-1	3550420..3550896	+	158	58582942	-	XOO3319	-	putative transposase
2976	 60.65	0	3551120..3554308	+	1062	58582943	oar	XOO3320	-	Oar protein
2977	 63.68	0	3554463..3555434	+	323	58582944	-	XOO3321	-	TonB-like protein
2978	 65.83	0	3555724..3556200	-	158	58582945	-	XOO3322	-	SPOUT methyltransferase superfamily protein
2979	 62.86	0	3556749..3556958	+	69	58582946	-	XOO3323	-	hypothetical protein
2980	 61.47	0	3557284..3558399	-	371	58582947	-	XOO3324	-	DnaJ domain-containing protein
2981	 64.03	0	3558411..3558827	-	138	58582948	-	XOO3325	-	hypothetical protein
2982	 68.32	+1	3559780..3560808	-	342	58582950	holA	XOO3327	-	DNA polymerase III subunit delta
2983	 66.51	0	3560831..3561472	-	213	58582951	rlpB	XOO3328	-	lipoprotein
2984	 65.23	0	3561980..3564622	-	880	58582952	leuS	XOO3329	-	leucyl-tRNA synthetase
2985	 71.24	+2	3564695..3565306	-	203	58582954	-	XOO3331	-	hypothetical protein
2986	 66.87	0	3565388..3566368	+	326	58582955	trx	XOO3332	-	thioredoxin
2987	 61.93	0	3566378..3567073	+	231	58582956	-	XOO3333	-	hypothetical protein
2988	 65.19	0	3567373..3567507	-	44	58582957	-	XOO3334	-	transposase
2989	 54.81	-2	3568437..3568883	+	148	58582960	-	XOO3337	-	transposase
2990	 61.54	0	3570604..3570837	+	77	122879252	-	XOO3339	-	hypothetical protein
2991	 65.44	0	3570871..3571845	+	324	58582963	-	XOO3340	-	peptidyl-prolyl cis-trans isomerase
2992	 69.27	+1	3571853..3572044	-	63	58582965	-	XOO3342	-	hypothetical protein
2993	 62.55	0	3572135..3573517	-	460	58582966	-	XOO3343	-	putative ISXo8 transposase
2994	 62.91	0	3573542..3574765	-	407	58582967	-	XOO3344	-	ISxac1 transposase
2995	 50.76	-2	3574902..3575429	+	175	58582968	-	XOO3345	-	hypothetical protein
2996	 63.11	0	3575426..3576382	-	318	58582969	-	XOO3346	-	transposase
2997	 54.81	-2	3576609..3577055	+	148	58582970	-	XOO3347	-	transposase
2998	 60.28	-1	3577656..3579833	+	725	58582972	glgX	XOO3349	-	glycogen debranching enzyme
2999	 60.20	-1	3580384..3580893	-	169	58582973	-	XOO3350	-	putative transposase
3000	 62.96	0	3580868..3581353	-	161	58582974	-	XOO3351	-	putative transposase
3001	 61.03	0	3581516..3582508	-	330	58582975	-	XOO3352	-	putative transposase
3002	 62.75	0	3582586..3582942	+	118	58582976	-	XOO3353	-	transposase
3003	 63.37	0	3582978..3583280	+	100	58582977	-	XOO3354	-	transposase
3004	 60.36	0	3583658..3583990	+	110	58582980	tnpA	XOO3357	-	transposase
3005	 57.83	-1	3584909..3585451	+	180	58582983	-	XOO3360	-	IS30 family transposase
3006	 56.37	-2	3585448..3585981	+	177	58582984	-	XOO3361	-	putative transposase
3007	 58.07	-1	3585947..3586423	+	158	58582985	-	XOO3362	-	putative transposase
3008	 60.15	-1	3586456..3586854	-	132	58582986	xrvA	XOO3363	-	virulence regulator
3009	 62.69	0	3586939..3587391	-	150	58582987	-	XOO3364	-	hypothetical protein
3010	 61.16	0	3587700..3588425	+	241	58582988	-	XOO3365	-	IS1478 transposase
3011	 68.29	+1	3589566..3590057	+	163	58582991	-	XOO3368	-	hypothetical protein
3012	 62.50	0	3590260..3590427	+	55	121632112	-	XOO4876	-	putative transposase
3013	 62.27	0	3590471..3591220	+	249	58582992	-	XOO3369	-	putative transposase
3014	 66.94	0	3591802..3593619	-	605	58582993	estA	XOO3370	-	lipase; esterase
3015	 62.69	0	3593777..3593977	+	66	58582994	-	XOO3371	-	sulfur carrier protein ThiS
3016	 64.27	0	3594348..3595307	+	319	58582995	thiG	XOO3372	-	thiazole synthase
3017	 65.35	0	3595609..3596367	+	252	58582996	trmB	XOO3373	-	tRNA (guanine-N(7))-methyltransferase
3018	 63.07	0	3596443..3598305	+	620	58582997	sac1	XOO3374	-	sulfur deprivation response regulator
3019	 63.43	0	3598363..3598887	-	174	58582998	-	XOO3375	-	hypothetical protein
3020	 62.32	0	3598964..3599239	+	91	58582999	-	XOO3376	-	hypothetical protein
3021	 64.12	0	3599294..3600079	+	261	58583000	-	XOO3377	-	IS1478 transposase
3022	 62.46	0	3600143..3600760	+	205	58583001	-	XOO3378	-	IS1478 transposase
3023	 57.83	-1	3601583..3602125	+	180	58583002	-	XOO3379	-	IS30 family transposase
3024	 64.99	0	3602294..3603007	+	237	122879253	-	XOO3380	-	fumarylacetoacetate hydrolase
3025	 58.39	-1	3603056..3603490	+	144	58583004	mscL	XOO3381	-	large-conductance mechanosensitive channel
3026	 55.48	-2	3603947..3604411	-	154	58583006	-	XOO3383	-	transposase
3027	 68.08	+1	3607458..3608519	-	353	58583011	-	XOO3388	-	tRNA/rRNA methyltransferase
3028	 61.84	0	3608630..3608857	-	75	58583012	-	XOO3389	-	acetyltransferase
3029	 63.13	0	3609718..3610734	-	338	58583014	-	XOO3391	-	transposase
3030	 59.16	-1	3610746..3611198	+	150	58583015	-	XOO3392	-	hypothetical protein
3031	 64.39	0	3611563..3614289	-	908	58583016	pepN	XOO3393	-	aminopeptidase N
3032	 64.62	0	3614584..3617709	-	1041	58583017	acrF	XOO3394	-	acriflavin resistance protein
3033	 65.31	0	3617706..3618662	-	318	58583018	-	XOO3395	-	RND efflux membrane fusion protein
3034	 64.14	0	3619211..3621190	-	659	58583019	nodQ	XOO3396	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3035	 62.93	0	3621187..3622095	-	302	58583020	raxP	XOO3397	-	sulfate adenylyltransferase subunit 2
3036	 69.38	+1	3622276..3623529	+	417	58583021	cysJ	XOO3398	-	NADPH-sulfite reductase flavoprotein subunit
3037	 66.01	0	3623519..3624124	+	201	58583022	xcysJ	XOO3399	-	sulfite reductase flavoprotein
3038	 64.79	0	3624248..3625954	+	568	122879254	cysI	XOO3400	-	sulfite reductase subunit beta
3039	 64.88	0	3625951..3626676	+	241	58583024	cysH	XOO3401	-	phosphoadenosine phosphosulfate reductase
3040	 65.11	0	3626812..3628422	-	536	58583025	-	XOO3402	-	hypothetical protein
3041	 65.07	0	3628404..3630464	-	686	58583026	fecA	XOO3403	-	TonB-dependent receptor
3042	 67.65	+1	3630602..3631108	-	168	58583027	-	XOO3404	-	hypothetical protein
3043	 65.08	0	3631362..3632558	+	398	58583028	-	XOO3405	-	sensor histidine kinase
3044	 63.83	0	3633629..3633910	-	93	58583029	-	XOO3406	-	hypothetical protein
3045	 66.67	0	3633921..3634904	-	327	58583030	cysB	XOO3407	-	transcriptional regulator CysB-like protein
3046	 71.31	+2	3635073..3636278	+	401	58583031	cysG	XOO3408	-	siroheme synthase
3047	 66.67	0	3636295..3637254	+	319	58583032	cysK	XOO3409	-	cysteine synthase
3048	 64.89	0	3637554..3638060	+	168	58583033	-	XOO3410	-	hypothetical protein
3049	 61.22	0	3638208..3638795	+	195	58583034	-	XOO3411	-	hypothetical protein
3050	 62.99	0	3638997..3640001	-	334	122879255	-	XOO3412	-	fructose-bisphosphate aldolase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.