IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2915	 68.74	+1	3488262..3489128	-	288	58582874	trpA	XOO3251	-	tryptophan synthase subunit alpha
2916	 64.78	0	3489515..3490732	-	405	122879248	trpB	XOO3252	-	tryptophan synthase subunit beta
2917	 66.86	0	3490790..3491806	+	338	58582876	trpI	XOO3253	-	transcriptional regulator
2918	 63.68	0	3492177..3492845	-	222	58582877	trpF	XOO3254	-	N-(5'-phosphoribosyl)anthranilate isomerase
2919	 66.15	0	3492842..3493615	-	257	58582878	truA	XOO3255	-	tRNA pseudouridine synthase A
2920	 67.82	+1	3493785..3493958	-	57	58582879	-	XOO3256	-	hypothetical protein
2921	 60.90	0	3494037..3494192	-	51	58582880	-	XOO3257	-	hypothetical protein
2922	 69.34	+1	3494189..3496174	-	661	58582881	-	XOO3258	-	FimV
2923	 64.42	0	3496822..3497847	-	341	58582882	asd	XOO3259	-	aspartate-semialdehyde dehydrogenase
2924	 68.09	+1	3497932..3499059	-	375	58582883	-	XOO3260	-	2-hydroxyacid dehydrogenase
2925	 66.30	0	3498998..3500101	-	367	58582884	aroC	XOO3261	-	chorismate synthase
2926	 65.05	0	3500112..3501038	-	308	58582885	yfcB	XOO3262	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2927	 65.59	0	3501119..3501769	+	216	58582886	-	XOO3263	-	hypothetical protein
2928	 66.67	0	3502839..3502952	+	37	58582888	dpsD	XOO3265	-	phosphatidylserine decarboxylase
2929	 66.06	0	3503165..3504805	-	546	58582889	dniR	XOO3266	-	membrane-bound lytic murein transglycosylase D precursor
2930	 67.54	+1	3504935..3505390	+	151	58582890	-	XOO3267	-	hypothetical protein
2931	 66.25	0	3505459..3505938	-	159	58582891	-	XOO3268	-	hypothetical protein
2932	 62.89	0	3506171..3507388	-	405	122879249	-	XOO3269	-	integral membrane protein
2933	 65.95	0	3507349..3507627	-	92	58582893	-	XOO3270	-	integral membrane protein
2934	 66.31	0	3507687..3508253	+	188	58582894	greB	XOO3271	-	transcription elongation factor GreB
2935	 62.46	0	3508377..3509777	-	466	58582895	-	XOO3272	-	hypothetical protein
2936	 66.67	0	3510040..3510342	+	100	58582897	-	XOO3274	-	carboxymethylenebutenolidase
2937	 66.37	0	3510333..3510668	+	111	58582898	-	XOO3275	-	hypothetical protein
2938	 61.31	0	3510696..3510863	+	55	58582899	-	XOO3276	-	hypothetical protein
2939	 65.05	0	3511613..3511798	+	61	58582900	-	XOO3277	-	hypothetical protein
2940	 62.28	0	3511833..3512402	-	189	58582901	dcd	XOO3278	-	deoxycytidine triphosphate deaminase
2941	 66.20	0	3512495..3513346	-	283	122879250	-	XOO3279	-	hypothetical protein
2942	 62.19	0	3513814..3514572	-	252	58582903	-	XOO3280	-	transposase
2943	 65.67	0	3514734..3516749	+	671	58582904	-	XOO3281	-	metallopeptidase
2944	 60.92	0	3517020..3517802	-	260	58582905	-	XOO3282	-	integral membrane protein
2945	 68.65	+1	3517759..3518313	-	184	58582906	-	XOO3283	-	methylated-DNA-protein-cysteine S-methyltransferase related protein
2946	 65.11	0	3518604..3519566	-	320	58582907	-	XOO3284	-	IS1595 transposase
2947	 65.08	0	3520334..3520648	-	104	58582910	-	XOO3287	-	reductase
2948	 65.74	0	3520851..3522149	-	432	58582911	dadA	XOO3288	-	D-amino acid dehydrogenase subunit
2949	 64.82	0	3522109..3523356	-	415	58582912	yxaH	XOO3289	-	transport protein
2950	 61.88	0	3523581..3524060	-	159	58582913	slyD	XOO3290	-	peptidyl-prolyl cis-trans isomerase
2951	 67.32	+1	3524096..3524707	+	203	58582914	-	XOO3291	-	lipoprotein
2952	 66.13	0	3524817..3525566	+	249	58582915	-	XOO3292	-	hypothetical protein
2953	 64.43	0	3525774..3526265	-	163	58582916	-	XOO3293	-	acyl-CoA thioester hydrolase
2954	 63.97	0	3526512..3527030	-	172	58582917	-	XOO3294	-	hypothetical protein
2955	 62.77	0	3527379..3528788	-	469	58582918	gltT	XOO3295	-	glutamate symport protein
2956	 68.25	+1	3528843..3530549	+	568	58582919	phoA	XOO3296	-	alkaline phosphatase
2957	 67.89	+1	3530583..3531887	+	434	58582920	mesJ	XOO3297	-	cell cycle protein
2958	 62.84	0	3531919..3532179	+	86	161898970	xseB	XOO3298	-	exodeoxyribonuclease VII small subunit
2959	 66.67	0	3532181..3533056	+	291	58582922	ispA	XOO3299	-	geranyltranstransferase; farnesyl-diphosphate synthase
2960	 63.73	0	3533614..3534837	+	407	58582923	-	XOO3300	-	extracellular protease
2961	 58.97	-1	3534891..3535397	-	168	58582925	-	XOO3302	-	hypothetical protein
2962	 66.60	0	3535885..3537297	-	470	58582926	pmbA	XOO3303	-	hypothetical protein
2963	 66.15	0	3537398..3537979	+	193	58582927	-	XOO3304	-	hypothetical protein
2964	 67.84	+1	3538236..3539681	-	481	58582928	tldD	XOO3305	-	hypothetical protein
2965	 63.19	0	3539732..3540163	+	143	58582929	-	XOO3306	-	hypothetical protein
2966	 60.54	0	3540151..3541032	+	293	58582930	-	XOO3307	-	putative ISXo8 transposase
2967	 58.41	-1	3541002..3541328	+	108	58582931	-	XOO3308	-	putative transposase
2968	 58.70	-1	3541325..3541801	+	158	58582932	-	XOO3309	-	putative transposase
2969	 61.93	0	3541838..3542386	+	182	58582933	-	XOO3310	-	putative ISXo8 transposase
2970	 69.08	+1	3543015..3546779	-	1254	58582936	-	XOO3313	-	hypothetical protein
2971	 64.47	0	3546927..3548426	-	499	122879251	rng	XOO3315	-	ribonuclease G
2972	 64.73	0	3548426..3549148	-	240	58582939	maf	XOO3316	-	Maf-like protein
2973	 65.71	0	3549137..3549871	+	244	58582940	bp26	XOO3317	-	outer membrane protein
2974	 58.06	-1	3550083..3550454	+	123	58582941	-	XOO3318	-	putative transposase
2975	 58.91	-1	3550420..3550896	+	158	58582942	-	XOO3319	-	putative transposase
2976	 60.65	0	3551120..3554308	+	1062	58582943	oar	XOO3320	-	Oar protein
2977	 63.68	0	3554463..3555434	+	323	58582944	-	XOO3321	-	TonB-like protein
2978	 65.83	0	3555724..3556200	-	158	58582945	-	XOO3322	-	SPOUT methyltransferase superfamily protein
2979	 62.86	0	3556749..3556958	+	69	58582946	-	XOO3323	-	hypothetical protein
2980	 61.47	0	3557284..3558399	-	371	58582947	-	XOO3324	-	DnaJ domain-containing protein
2981	 64.03	0	3558411..3558827	-	138	58582948	-	XOO3325	-	hypothetical protein
2982	 68.32	+1	3559780..3560808	-	342	58582950	holA	XOO3327	-	DNA polymerase III subunit delta
2983	 66.51	0	3560831..3561472	-	213	58582951	rlpB	XOO3328	-	lipoprotein
2984	 65.23	0	3561980..3564622	-	880	58582952	leuS	XOO3329	-	leucyl-tRNA synthetase
2985	 71.24	+2	3564695..3565306	-	203	58582954	-	XOO3331	-	hypothetical protein
2986	 66.87	0	3565388..3566368	+	326	58582955	trx	XOO3332	-	thioredoxin
2987	 61.93	0	3566378..3567073	+	231	58582956	-	XOO3333	-	hypothetical protein
2988	 65.19	0	3567373..3567507	-	44	58582957	-	XOO3334	-	transposase
2989	 54.81	-2	3568437..3568883	+	148	58582960	-	XOO3337	-	transposase
2990	 61.54	0	3570604..3570837	+	77	122879252	-	XOO3339	-	hypothetical protein
2991	 65.44	0	3570871..3571845	+	324	58582963	-	XOO3340	-	peptidyl-prolyl cis-trans isomerase
2992	 69.27	+1	3571853..3572044	-	63	58582965	-	XOO3342	-	hypothetical protein
2993	 62.55	0	3572135..3573517	-	460	58582966	-	XOO3343	-	putative ISXo8 transposase
2994	 62.91	0	3573542..3574765	-	407	58582967	-	XOO3344	-	ISxac1 transposase
2995	 50.76	-2	3574902..3575429	+	175	58582968	-	XOO3345	-	hypothetical protein
2996	 63.11	0	3575426..3576382	-	318	58582969	-	XOO3346	-	transposase
2997	 54.81	-2	3576609..3577055	+	148	58582970	-	XOO3347	-	transposase
2998	 60.28	-1	3577656..3579833	+	725