IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2838	 60.57	0	3404164..3405360	-	398	58582793	gumK	XOO3170	-	glucuronosyltransferase GumK
2839	 62.51	0	3405425..3406939	-	504	58582794	gumJ	XOO3171	-	GumJ
2840	 64.00	0	3406936..3407985	-	349	58582795	gumI	XOO3172	-	GumI
2841	 60.37	0	3407982..3409124	-	380	58582796	gumH	XOO3173	-	GumH
2842	 62.12	0	3409192..3410268	-	358	122879245	gumG	XOO3174	-	GumG
2843	 60.53	0	3410285..3411376	-	363	58582798	gumF	XOO3175	-	GumF
2844	 57.37	-1	3411373..3412674	-	433	58582799	gumE	XOO3176	-	GumE
2845	 60.82	0	3412757..3414277	-	506	58582800	gumD	XOO3177	-	GumD
2846	 57.96	-1	3414455..3415936	-	493	58582801	gumC	XOO3178	-	GumC
2847	 58.94	-1	3415876..3416574	-	232	58582802	gumB	XOO3179	-	GumB
2848	 61.62	0	3417183..3417539	-	118	58582803	-	XOO3180	-	hypothetical protein
2849	 57.67	-1	3417520..3417819	-	99	58582804	ihfA	XOO3181	-	integration host factor subunit alpha
2850	 66.12	0	3417841..3420219	-	792	58582805	pheT	XOO3182	-	phenylalanyl-tRNA synthetase subunit beta
2851	 63.86	0	3420328..3421323	-	331	58582806	pheS	XOO3183	-	phenylalanyl-tRNA synthetase subunit alpha
2852	 60.28	-1	3421578..3421937	-	119	58582807	rplT	XOO3184	-	50S ribosomal protein L20
2853	 61.62	0	3421948..3422145	-	65	58582808	rpmI	XOO3185	-	50S ribosomal protein L35
2854	 59.79	-1	3422394..3422873	-	159	58582809	infC	XOO3186	-	translation initiation factor IF-3
2855	 62.80	0	3422985..3425000	-	671	58582810	thrS	XOO3187	-	threonyl-tRNA synthetase
2856	 60.22	-1	3425306..3425398	+	30	58582811	-	XOO3188	-	maltose transport gene repressor
2857	 61.16	0	3425454..3426143	+	229	58582812	-	XOO3189	-	IS1404 transposase
2858	 61.57	0	3425692..3425907	+	71	58582813	-	XOO3190	-	IS1404 transposase
2859	 62.26	0	3426140..3426457	+	105	58582814	-	XOO3191	-	IS1389 transposase
2860	 57.66	-1	3426570..3426791	-	73	58582815	-	XOO3192	-	IS1478 transposase
2861	 60.24	-1	3427182..3429203	-	673	122879246	uvrB	XOO3193	-	excinuclease ABC subunit B
2862	 59.67	-1	3429342..3429884	+	180	58582817	fimT	XOO3194	-	fimbrial biogenesis protein
2863	 60.09	-1	3430063..3430518	-	151	58582818	pilE1	XOO3195	-	type IV pilin
2864	 55.09	-2	3430525..3434049	-	1174	58582819	pilY1	XOO3196	-	PilY1
2865	 61.62	0	3434053..3435141	-	362	58582820	-	XOO3197	-	putative transposase
2866	 61.40	0	3435144..3436112	+	322	58582821	-	XOO3198	-	putative transposase
2867	 57.84	-1	3436705..3437214	-	169	58582822	pilX	XOO3199	-	PilX
2868	 59.98	-1	3437218..3438384	-	388	58582823	-	XOO3200	-	hypothetical protein
2869	 57.17	-1	3438381..3438854	-	157	58582824	pilV	XOO3201	-	pre-pilin leader sequence
2870	 62.40	0	3438851..3439366	-	171	58582825	fimT	XOO3202	-	pre-pilin like leader sequence
2871	 64.29	0	3439536..3440921	-	461	58582826	-	XOO3203	-	hypothetical protein
2872	 56.43	-2	3441028..3444222	-	1064	58582827	oar	XOO3204	-	Oar protein
2873	 64.40	0	3444980..3445642	-	220	58582828	-	XOO3205	-	hypothetical protein
2874	 69.09	+1	3445576..3446319	-	247	58582829	-	XOO3206	-	short chain dehydrogenase
2875	 59.81	-1	3446316..3446636	-	106	58582830	-	XOO3207	-	hypothetical protein
2876	 63.39	0	3446758..3447336	+	192	58582831	sodB	XOO3208	-	iron superoxide dismutase
2877	 65.88	0	3447478..3448623	-	381	58582832	purK	XOO3209	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2878	 65.67	0	3448620..3449123	-	167	58582833	purE	XOO3210	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2879	 65.19	0	3449182..3449451	+	89	58582834	-	XOO3211	-	hypothetical protein
2880	 67.23	0	3449448..3450335	+	295	58582835	nadC	XOO3212	-	nicotinate-nucleotide pyrophosphorylase
2881	 66.05	0	3450471..3451439	+	322	58582836	-	XOO3213	-	hypothetical protein
2882	 62.13	0	3451814..3453928	-	704	58582837	pnp	XOO3214	-	polynucleotide phosphorylase/polyadenylase
2883	 57.09	-1	3454094..3454354	-	86	161898974	rpsO	XOO3215	-	30S ribosomal protein S15
2884	 66.02	0	3454511..3455437	-	308	58582839	truB	XOO3216	-	tRNA pseudouridine synthase B
2885	 65.14	0	3455517..3455909	-	130	58582840	rbfA	XOO3217	-	ribosome-binding factor A
2886	 64.82	0	3456053..3458815	-	920	58582841	infB	XOO3218	-	translation initiation factor IF-2
2887	 63.89	0	3458869..3460380	-	503	58582842	nusA	XOO3219	-	transcription elongation factor NusA
2888	 61.76	0	3460385..3460975	-	196	161898973	-	XOO3221	-	hypothetical protein
2889	 62.91	0	3461450..3462913	-	487	58582845	nuoN	XOO3222	-	NADH dehydrogenase subunit N
2890	 60.94	0	3462947..3464449	-	500	58582846	nuoM	XOO3223	-	NADH dehydrogenase subunit M
2891	 60.65	0	3464470..3466629	-	719	58582847	nuoL	XOO3224	-	NADH dehydrogenase subunit L
2892	 58.17	-1	3466637..3466942	-	101	58582848	nuoK	XOO3225	-	NADH dehydrogenase subunit K
2893	 62.57	0	3466939..3467622	-	227	58582849	nuoJ	XOO3226	-	NADH dehydrogenase subunit J
2894	 59.15	-1	3467606..3468097	-	163	58582850	nuoI	XOO3227	-	NADH dehydrogenase subunit I
2895	 59.71	-1	3468098..3469189	-	363	161898972	nuoH	XOO3228	-	NADH dehydrogenase subunit H
2896	 65.46	0	3469186..3471420	-	744	161898971	nuoG	XOO3229	-	NADH dehydrogenase subunit G
2897	 62.70	0	3471417..3472751	-	444	58582853	nuoF	XOO3230	-	NADH-ubiquinone oxidoreductase NQO1 subunit
2898	 61.74	0	3472755..3473282	-	175	58582855	nuoE	XOO3232	-	NADH dehydrogenase subunit E
2899	 60.09	-1	3473279..3474586	-	435	58582856	nuoD	XOO3233	-	NADH dehydrogenase subunit D
2900	 64.41	0	3474583..3475335	-	250	58582857	nuoC	XOO3234	-	NADH dehydrogenase subunit C
2901	 63.37	0	3475372..3475947	-	191	58582858	nuoB	XOO3235	-	NADH dehydrogenase subunit B
2902	 57.95	-1	3475917..3476375	-	152	58582859	nuoA	XOO3236	-	NADH dehydrogenase subunit A
2903	 66.67	0	3476510..3476971	-	153	58582860	secG	XOO3237	-	preprotein translocase subunit SecG
2904	 65.04	0	3477005..3477805	-	266	58582861	tpiA	XOO3238	-	triosephosphate isomerase
2905	 65.75	0	3477804..3478673	+	289	58582862	-	XOO3239	-	dehydrogenase
2906	 60.17	-1	3479023..3479622	-	199	58582863	glbN	XOO3240	-	cyanoglobin
2907	 57.14	-1	3479451..3479597	-	48	58582864	-	XOO3241	-	hypothetical protein
2908	 54.81	-2	3479960..3480406	-	148	58582866	-	XOO3243	-	transposase
2909	 57.61	-1	3480945..3481187	+	80	58582868	-	XOO3245	-	hypothetical protein
2910	 65.02	0	3481403..3483769	-	788	58582869	-	XOO3246	-	phosphodiesterase
2911	 65.79	0	3483766..3484446	-	226	58582870	-	XOO3247	-	hypothetical protein
2912	 62.62	0	3484650..3485588	-	312	122879247	-	XOO3248	-	oxidoreductase
2913	 65.63	0	3485711..3487060	-	449	58582872	mrsA	XOO3249	-	phosphohexose mutase
2914	 64.75	0	3487057..3487944	-	295	58582873	accD	XOO3250	-	acetyl-CoA carboxylase subunit beta
2915	 68.74	+1	3488262..3489128	-	288	58582874	trpA	XOO3251	-	tryptophan synthase subunit alpha
2916	 64.78	0	3489515..3490732	-	405	122879248	trpB	XOO3252	-	tryptophan synthase subunit beta
2917	 66.86	0	3490790..3491806	+	338	58582876	trpI	XOO3253	-	transcriptional regulator
2918	 63.68	0	3492177..3492845	-	222	58582877	trpF	XOO3254	-	N-(5'-phosphoribosyl)anthranilate isomerase
2919	 66.15	0	3492842..3493615	-	257	58582878	truA	XOO3255	-	tRNA pseudouridine synthase A
2920	 67.82	+1	3493785..3493958	-	57	58582879	-	XOO3256	-	hypothetical protein
2921	 60.90	0	3494037..3494192	-	51	58582880	-	XOO3257	-	hypothetical protein
2922	 69.34	+1	3494189..3496174	-	661	58582881	-	XOO3258	-	FimV
2923	 64.42	0	3496822..3497847	-	341	58582882	asd	XOO3259	-	aspartate-semialdehyde dehydrogenase
2924	 68.09	+1	3497932..3499059	-	375	58582883	-	XOO3260	-	2-hydroxyacid dehydrogenase
2925	 66.30	0	3498998..3500101	-	367	58582884	aroC	XOO3261	-	chorismate synthase
2926	 65.05	0	3500112..3501038	-	308	58582885	yfcB	XOO3262	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2927	 65.59	0	3501119..3501769	+	216	58582886	-	XOO3263	-	hypothetical protein
2928	 66.67	0	3502839..3502952	+	37	58582888	dpsD	XOO3265	-	phosphatidylserine decarboxylase
2929	 66.06	0	3503165..3504805	-	546	58582889	dniR	XOO3266	-	membrane-bound lytic murein transglycosylase D precursor
2930	 67.54	+1	3504935..3505390	+	151	58582890	-	XOO3267	-	hypothetical protein
2931	 66.25	0	3505459..3505938	-	159	58582891	-	XOO3268	-	hypothetical protein
2932	 62.89	0	3506171..3507388	-	405	122879249	-	XOO3269	-	integral membrane protein
2933	 65.95	0	3507349..3507627	-	92	58582893	-	XOO3270	-	integral membrane protein
2934	 66.31	0	3507687..3508253	+	188	58582894	greB	XOO3271	-	transcription elongation factor GreB
2935	 62.46	0	3508377..3509777	-	466	58582895	-	XOO3272	-	hypothetical protein
2936	 66.67	0	3510040..3510342	+	100	58582897	-	XOO3274	-	carboxymethylenebutenolidase
2937	 66.37	0	3510333..3510668	+	111	58582898	-	XOO3275	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.