IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2838	 60.57	0	3404164..3405360	-	398	58582793	gumK	XOO3170	-	glucuronosyltransferase GumK
2839	 62.51	0	3405425..3406939	-	504	58582794	gumJ	XOO3171	-	GumJ
2840	 64.00	0	3406936..3407985	-	349	58582795	gumI	XOO3172	-	GumI
2841	 60.37	0	3407982..3409124	-	380	58582796	gumH	XOO3173	-	GumH
2842	 62.12	0	3409192..3410268	-	358	122879245	gumG	XOO3174	-	GumG
2843	 60.53	0	3410285..3411376	-	363	58582798	gumF	XOO3175	-	GumF
2844	 57.37	-1	3411373..3412674	-	433	58582799	gumE	XOO3176	-	GumE
2845	 60.82	0	3412757..3414277	-	506	58582800	gumD	XOO3177	-	GumD
2846	 57.96	-1	3414455..3415936	-	493	58582801	gumC	XOO3178	-	GumC
2847	 58.94	-1	3415876..3416574	-	232	58582802	gumB	XOO3179	-	GumB
2848	 61.62	0	3417183..3417539	-	118	58582803	-	XOO3180	-	hypothetical protein
2849	 57.67	-1	3417520..3417819	-	99	58582804	ihfA	XOO3181	-	integration host factor subunit alpha
2850	 66.12	0	3417841..3420219	-	792	58582805	pheT	XOO3182	-	phenylalanyl-tRNA synthetase subunit beta
2851	 63.86	0	3420328..3421323	-	331	58582806	pheS	XOO3183	-	phenylalanyl-tRNA synthetase subunit alpha
2852	 60.28	-1	3421578..3421937	-	119	58582807	rplT	XOO3184	-	50S ribosomal protein L20
2853	 61.62	0	3421948..3422145	-	65	58582808	rpmI	XOO3185	-	50S ribosomal protein L35
2854	 59.79	-1	3422394..3422873	-	159	58582809	infC	XOO3186	-	translation initiation factor IF-3
2855	 62.80	0	3422985..3425000	-	671	58582810	thrS	XOO3187	-	threonyl-tRNA synthetase
2856	 60.22	-1	3425306..3425398	+	30	58582811	-	XOO3188	-	maltose transport gene repressor
2857	 61.16	0	3425454..3426143	+	229	58582812	-	XOO3189	-	IS1404 transposase
2858	 61.57	0	3425692..3425907	+	71	58582813	-	XOO3190	-	IS1404 transposase
2859	 62.26	0	3426140..3426457	+	105	58582814	-	XOO3191	-	IS1389 transposase
2860	 57.66	-1	3426570..3426791	-	73	58582815	-	XOO3192	-	IS1478 transposase
2861	 60.24	-1	3427182..3429203	-	673	122879246	uvrB	XOO3193	-	excinuclease ABC subunit B
2862	 59.67	-1	3429342..3429884	+	180	58582817	fimT	XOO3194	-	fimbrial biogenesis protein
2863	 60.09	-1	3430063..3430518	-	151	58582818	pilE1	XOO3195	-	type IV pilin
2864	 55.09	-2	3430525..3434049	-	1174	58582819	pilY1	XOO3196	-	PilY1
2865	 61.62	0	3434053..3435141	-	362	58582820	-	XOO3197	-	putative transposase
2866	 61.40	0	3435144..3436112	+	322	58582821	-	XOO3198	-	putative transposase
2867	 57.84	-1	3436705..3437214	-	169	58582822	pilX	XOO3199	-	PilX
2868	 59.98	-1	3437218..3438384	-	388	58582823	-	XOO3200	-	hypothetical protein
2869	 57.17	-1	3438381..3438854	-	157	58582824	pilV	XOO3201	-	pre-pilin leader sequence
2870	 62.40	0	3438851..3439366	-	171	58582825	fimT	XOO3202	-	pre-pilin like leader sequence
2871	 64.29	0	3439536..3440921	-	461	58582826	-	XOO3203	-	hypothetical protein
2872	 56.43	-2	3441028..3444222	-	1064	58582827	oar	XOO3204	-	Oar protein
2873	 64.40	0	3444980..3445642	-	220	58582828	-	XOO3205	-	hypothetical protein
2874	 69.09	+1	3445576..3446319	-	247	58582829	-	XOO3206	-	short chain dehydrogenase
2875	 59.81	-1	3446316..3446636	-	106	58582830	-	XOO3207	-	hypothetical protein
2876	 63.39	0	3446758..3447336	+	192	58582831	sodB	XOO3208	-	iron superoxide dismutase
2877	 65.88	0	3447478..3448623	-	381	58582832	purK	XOO3209	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2878	 65.67	0	3448620..3449123	-	167	58582833	purE	XOO3210	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2879	 65.19	0	3449182..3449451	+	89	58582834	-	XOO3211	-	hypothetical protein
2880	 67.23	0	3449448..3450335	+	295	58582835	nadC	XOO3212	-	nicotinate-nucleotide pyrophosphorylase
2881	 66.05	0	3450471..3451439	+	322	58582836	-	XOO3213	-	hypothetical protein
2882	 62.13	0	3451814..3453928	-	704	58582837	pnp	XOO3214	-	polynucleotide phosphorylase/polyadenylase
2883	 57.09	-1	3454094..3454354	-	86	161898974	rpsO	XOO3215	-	30S ribosomal protein S15
2884	 66.02	0	3454511..3455437	-	308	58582839	truB	XOO3216	-	tRNA pseudouridine synthase B
2885	 65.14	0	3455517..3455909	-	130	58582840	rbfA	XOO3217	-	ribosome-binding factor A
2886	 64.82	0	3456053..3458815	-	920	58582841	infB	XOO3218	-	translation initiation factor IF-2
2887	 63.89	0	3458869..3460380	-	503	58582842	nusA	XOO3219	-	transcription elongation factor NusA
2888	 61.76	0	3460385..3460975	-	196	161898973	-	XOO3221	-	hypothetical protein
2889	 62.91	0	3461450..3462913	-	487	58582845	nuoN	XOO3222	-	NADH dehydrogenase subunit N
2890	 60.94	0	3462947..3464449	-	500	58582846	nuoM	XOO3223	-	NADH dehydrogenase subunit M
2891	 60.65	0	3464470..3466629	-	719	58582847	nuoL	XOO3224	-	NADH dehydrogenase subunit L
2892	 58.17	-1	3466637..3466942	-	101	58582848	nuoK	XOO3225	-	NADH dehydrogenase subunit K
2893	 62.57	0	3466939..3467622	-	227	58582849	nuoJ	XOO3226	-	NADH dehydrogenase subunit J
2894	 59.15	-1	3467606..3468097	-	163	58582850	nuoI	XOO3227	-	NADH dehydrogenase subunit I
2895	 59.71	-1	3468098..3469189	-	363	161898972	nuoH	XOO3228	-	NADH dehydrogenase subunit H
2896	 65.46	0	3469186..3471420	-	744	161898971	nuoG	XOO3229	-	NADH dehydrogenase subunit G
2897	 62.70	0	3471417..3472751	-	444	58582853	nuoF	XOO3230	-	NADH-ubiquinone oxidoreductase NQO1 subunit
2898	 61.74	0	3472755..3473282	-	175	58582855	nuoE	XOO3232	-	NADH dehydrogenase subunit E
2899	 60.09	-1	3473279..3474586	-	435	58582856	nuoD	XOO3233	-	NADH dehydrogenase subunit D
2900	 64.41	0	3474583..3475335	-	250	58582857	nuoC	XOO3234	-	NADH dehydrogenase subunit C
2901	 63.37	0	3475372..3475947	-	191	58582858	nuoB	XOO3235	-	NADH dehydrogenase subunit B
2902	 57.95	-1	3475917..3476375	-	152	58582859	nuoA	XOO3236	-	NADH dehydrogenase subunit A
2903	 66.67	0	3476510..3476971	-	153	58582860	secG	XOO3237	-	preprotein translocase subunit SecG
2904	 65.04	0	3477005..3477805	-	266	58582861	tpiA	XOO3238	-	triosephosphate isomerase
2905	 65.75	0	3477804..3478673	+	289	58582862	-	XOO3239	-	dehydrogenase
2906	 60.17	-1	3479023..3479622	-	199	58582863	glbN	XOO3240	-	cyanoglobin
2907	 57.14	-1	3479451..3479597	-	48	58582864	-	XOO3241	-	hypothetical protein
2908	 54.81	-2	3479960..3480406	-	148	58582866	-	XOO3243	-	transposase
2909	 57.61	-1	3480945..3481187	+	80	58582868	-	XOO3245	-	hypothetical protein
2910	 65.02	0	3481403..3483769	-	788	58582869	-	XOO3246	-	phosphodiesterase
2911	 65.79	0	3483766..3484446	-	226	58582870	-	XOO3247	-	hypothetical protein
2912	 62.62	0	3484650..3485588	-	312	122879247	-	XOO3248	-	oxidoreductase
2913	 65.63	0	3485711..3487060	-	449	58582872	mrsA	XOO3249	-	phosphohexose mutase
2914	 64.75	0	3487057..3487944	-	295	58582873	accD	XOO3250	-	acetyl-CoA carboxylase subunit beta
2915	 68.74	+1	3488262..3489128	-	288	58582874	trpA	XOO3251	-	tryptophan synthase subunit alpha
2916	 64.78	0	3489515..3490732	-	405	122879248	trpB	XOO3252	-	tryptophan synthase subunit beta
2917	 66.86	0	3490790..3491806	+	338	58582876	trpI	XOO3253	-	transcriptional regulator
2918	 63.68	0	3492177..3492845	-	222	58582877	trpF	XOO3254	-	N-(5'-phosphoribosyl)anthranilate isomerase
2919	 66.15	0	3492842..3493615	-	257	58582878	truA	XOO3255	-	tRNA pseudouridine synthase A
2920	 67.82	+1	3493785..3493958	-	57	58582879	-	XOO3256	-	hypothetical pr