IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2776	 64.87	0	3327766..3328155	+	129	58582726	pedG	XOO3103	-	putative FAD-dependent monooxygenase
2777	 67.85	+1	3328757..3329263	-	168	58582727	-	XOO3104	-	AraC-type DNA-binding domain-containing proteins
2778	 66.51	0	3330299..3330952	-	217	58582728	mobA	XOO3105	-	molybdopterin guanine dinucleotide synthase
2779	 67.15	0	3330906..3332159	-	417	58582729	moeA	XOO3106	-	molybdopterin biosynthesis
2780	 58.61	-1	3332383..3332742	+	119	58582730	-	XOO3107	-	hypothetical protein
2781	 63.03	0	3333249..3334265	+	338	58582732	-	XOO3109	-	transposase
2782	 61.20	0	3334486..3335034	-	182	58582733	-	XOO3110	-	putative ISXo8 transposase
2783	 58.91	-1	3335427..3335903	+	158	58582734	-	XOO3111	-	putative transposase
2784	 65.14	0	3336018..3338369	-	783	58582735	-	XOO3112	-	hypothetical protein
2785	 60.24	-1	3339105..3339524	-	139	58582737	btuB	XOO3114	-	TonB-dependent receptor
2786	 57.48	-1	3339567..3339947	-	126	58582738	btuB	XOO3115	-	TonB-dependent receptor
2787	 58.97	-1	3339986..3340492	-	168	58582739	btuB	XOO3116	-	TonB-dependent receptor
2788	 55.15	-2	3340547..3340711	+	54	58582740	tnpX1	XOO3117	-	IS1113 transposase
2789	 62.37	0	3340718..3341788	+	356	58582741	tnpX1	XOO3118	-	IS1113 transposase
2790	 65.11	0	3341798..3342886	-	362	58582742	btuB	XOO3119	-	TonB-dependent receptor
2791	 64.45	0	3343242..3345587	-	781	122879241	-	XOO3120	-	peptidase
2792	 65.27	0	3345909..3347624	-	571	58582744	xsa	XOO3121	-	xylosidase; arabinosidase
2793	 64.21	0	3347492..3351766	-	1424	58582745	-	XOO3122	-	hypothetical protein
2794	 61.30	0	3352095..3355040	-	981	58582746	btuB	XOO3123	-	TonB-dependent receptor
2795	 66.33	0	3355433..3357838	-	801	58582747	-	XOO3124	-	hypothetical protein
2796	 66.16	0	3358254..3359825	+	523	122879242	-	XOO3125	-	peptidase
2797	 60.96	0	3360032..3360364	-	110	58582749	-	XOO3126	-	hypothetical protein
2798	 66.50	0	3360673..3361263	-	196	58582750	-	XOO3127	-	hypothetical protein
2799	 70.00	+1	3361305..3361514	-	69	58582751	-	XOO3128	-	hypothetical protein
2800	 66.67	0	3361511..3361702	-	63	58582752	-	XOO3129	-	hypothetical protein
2801	 62.15	0	3361758..3362045	-	95	58582753	-	XOO3130	-	hypothetical protein
2802	 64.74	0	3362042..3364381	-	779	122879243	-	XOO3131	-	peptidase
2803	 63.20	0	3364371..3365957	-	528	58582755	yveA	XOO3132	-	amino acid permease
2804	 63.15	0	3366020..3367696	-	558	58582756	-	XOO3133	-	hypothetical protein
2805	 63.23	0	3367883..3369715	-	610	58582757	-	XOO3134	-	hypothetical protein
2806	 66.91	0	3369833..3371062	-	409	58582758	pepQ	XOO3135	-	proline dipeptidase
2807	 67.66	+1	3371029..3372645	-	538	122879244	-	XOO3136	-	ketoglutarate semialdehyde dehydrogenase
2808	 65.79	0	3372856..3373764	-	302	58582760	dapA	XOO3137	-	dihydrodipicolinate synthetase
2809	 69.21	+1	3373761..3375095	-	444	58582761	-	XOO3138	-	oxidoreductase
2810	 70.73	+1	3375067..3375312	-	81	58582762	soxA	XOO3139	-	sarcosine oxidase alpha subunit
2811	 70.70	+1	3375309..3376571	-	420	58582763	-	XOO3140	-	D-amino acid oxidase
2812	 65.98	0	3376571..3377596	-	341	58582764	-	XOO3141	-	hypothetical protein
2813	 61.87	0	3377655..3378383	+	242	58582765	-	XOO3142	-	transcriptional regulator
2814	 67.61	+1	3378399..3380204	+	601	58582766	ftsY	XOO3143	-	cell division protein
2815	 65.18	0	3380683..3381756	+	357	58582767	mutY	XOO3144	-	A/G-specific adenine glycosylase
2816	 62.00	0	3381759..3382058	+	99	58582768	-	XOO3145	-	hypothetical protein
2817	 60.53	0	3382758..3384044	-	428	58582770	fixL	XOO3147	-	sensor histidine kinase
2818	 62.69	0	3384922..3385701	+	259	58582771	-	XOO3148	-	IS1478 transposase
2819	 62.31	0	3385741..3386382	+	213	58582772	-	XOO3149	-	IS1478 transposase
2820	 63.66	0	3386372..3386836	+	154	58582773	-	XOO3150	-	hypothetical protein
2821	 69.84	+1	3386809..3386934	+	41	58582774	-	XOO3151	-	hypothetical protein
2822	 64.90	0	3386951..3387460	-	169	58582775	-	XOO3152	-	hypothetical protein
2823	 65.02	0	3387885..3388127	-	80	58582776	-	XOO3153	-	hypothetical protein
2824	 64.61	0	3389143..3390066	-	307	58582777	-	XOO3154	-	hypothetical protein
2825	 66.54	0	3390063..3390881	-	272	58582778	-	XOO3155	-	hypothetical protein
2826	 64.17	0	3390997..3391317	+	106	58582779	-	XOO3156	-	hypothetical protein
2827	 58.70	-1	3391824..3392300	-	158	58582780	-	XOO3157	-	putative transposase
2828	 58.33	-1	3392266..3392637	-	123	58582781	-	XOO3158	-	putative transposase
2829	 64.09	0	3392844..3393812	-	322	58582783	-	XOO3160	-	putative transposase
2830	 67.33	+1	3395240..3395842	+	200	58582784	blc	XOO3161	-	outer membrane lipoprotein Blc
2831	 67.34	+1	3398390..3398986	+	198	58582786	-	XOO3163	-	putative transposase
2832	 63.06	0	3398983..3399426	+	147	58582787	-	XOO3164	-	putative transposase
2833	 61.23	0	3399673..3400830	+	385	58582788	tISRso5	XOO3165	-	ISRSO5-transposase protein
2834	 65.14	0	3400948..3401928	-	326	58582789	gumN	XOO3166	-	GumN
2835	 65.80	0	3402038..3402499	-	153	58582790	-	XOO3167	-	hypothetical protein
2836	 63.65	0	3402534..3403328	-	264	58582791	gumM	XOO3168	-	GumM
2837	 56.48	-2	3403333..3404127	-	264	58582792	gumL	XOO3169	-	GumL
2838	 60.57	0	3404164..3405360	-	398	58582793	gumK	XOO3170	-	glucuronosyltransferase GumK
2839	 62.51	0	3405425..3406939	-	504	58582794	gumJ	XOO3171	-	GumJ
2840	 64.00	0	3406936..3407985	-	349	58582795	gumI	XOO3172	-	GumI
2841	 60.37	0	3407982..3409124	-	380	58582796	gumH	XOO3173	-	GumH
2842	 62.12	0	3409192..3410268	-	358	122879245	gumG	XOO3174	-	GumG
2843	 60.53	0	3410285..3411376	-	363	58582798	gumF	XOO3175	-	GumF
2844	 57.37	-1	3411373..3412674	-	433	58582799	gumE	XOO3176	-	GumE
2845	 60.82	0	3412757..3414277	-	506	58582800	gumD	XOO3177	-	GumD
2846	 57.96	-1	3414455..3415936	-	493	58582801	gumC	XOO3178	-	GumC
2847	 58.94	-1	3415876..3416574	-	232	58582802	gumB	XOO3179	-	GumB
2848	 61.62	0	3417183..3417539	-	118	58582803	-	XOO3180	-	hypothetical protein
2849	 57.67	-1	3417520..3417819	-	99	58582804	ihfA	XOO3181	-	integration host factor subunit alpha
2850	 66.12	0	3417841..3420219	-	792	58582805	pheT	XOO3182	-	phenylalanyl-tRNA synthetase subunit beta
2851	 63.86	0	3420328..3421323	-	331	58582806	pheS	XOO3183	-	phenylalanyl-tRNA synthetase subunit alpha
2852	 60.28	-1	3421578..3421937	-	119	58582807	rplT	XOO3184	-	50S ribosomal protein L20
2853	 61.62	0	3421948..3422145	-	65	58582808	rpmI	XOO3185	-	50S ribosomal protein L35
2854	 59.79	-1	3422394..3422873	-	159	58582809	infC	XOO3186	-	translation initiation factor IF-3
2855	 62.80	0	3422985..3425000	-	671	58582810	thrS	XOO3187	-	threonyl-tRNA synthetase
2856	 60.22	-1	3425306..3425398	+	30	58582811	-	XOO3188	-	maltose transport gene repressor
2857	 61.16	0	3425454..3426143	+	229	58582812	-	XOO3189	-	IS1404 transposase
2858	 61.57	0	3425692..3425907	+	71	58582813	-	XOO3190	-	IS1404 transposase
2859	 62.26	0	3426140..3426457	+	105	58582814	-	XOO3191	-	IS1389 transposase
2860	 57.66	-1	3426570..3426791	-	73	58582815	-	XOO3192	-	IS1478 transposase
2861	 60.24	-1	3427182..3429203	-	673	122879246	uvrB	XOO3193	-	excinuclease ABC subunit B
2862	 59.67	-1	3429342..3429884	+	180	58582817	fimT	XOO3194	-	fimbrial biogenesis protein
2863	 60.09	-1	3430063..3430518	-	151	58582818	pilE1	XOO3195	-	type IV pilin
2864	 55.09	-2	3430525..3434049	-	1174	58582819	pilY1	XOO3196	-	PilY1
2865	 61.62	0	3434053..3435141	-	362	58582820	-	XOO3197	-	putative transposase
2866	 61.40	0	3435144..3436112	+	322	58582821	-	XOO3198	-	putative transposase
2867	 57.84	-1	3436705..3437214	-	169	58582822	pilX	XOO3199	-	PilX
2868	 59.98	-1	3437218..3438384	-	388	58582823	-	XOO3200	-	hypothetical protein
2869	 57.17	-1	3438381..3438854	-	157	58582824	pilV	XOO3201	-	pre-pilin leader sequence
2870	 62.40	0	3438851..3439366	-	171	58582825	fimT	XOO3202	-	pre-pilin like leader sequence
2871	 64.29	0	3439536..3440921	-	461	58582826	-	XOO3203	-	hypothetical protein
2872	 56.43	-2	3441028..3444222	-	1064	58582827	oar	XOO3204	-	Oar protein
2873	 64.40	0	3444980..3445642	-	220	58582828	-	XOO3205	-	hypothetical protein
2874	 69.09	+1	3445576..3446319	-	247	58582829	-	XOO3206	-	short chain dehydrogenase
2875	 59.81	-1	3446316..3446636	-	106	58582830	-	XOO3207	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.