IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2728	 69.83	+1	3259927..3262830	-	967	58582658	-	XOO3035	-	serine/threonine kinase
2729	 69.29	+1	3262827..3263549	-	240	58582659	ptc1	XOO3036	-	phosphoprotein phosphatase
2730	 68.35	+1	3263546..3264199	-	217	58582660	-	XOO3037	-	hypothetical protein
2731	 68.37	+1	3264190..3267648	-	1152	58582661	-	XOO3038	-	hypothetical protein
2732	 70.24	+1	3267652..3268968	-	438	58582662	-	XOO3039	-	hypothetical protein
2733	 70.29	+1	3271738..3272289	-	183	58582665	-	XOO3042	-	hypothetical protein
2734	 65.10	0	3272286..3274334	-	682	58582666	-	XOO3043	-	hypothetical protein
2735	 59.92	-1	3275021..3275272	-	83	58582667	-	XOO3044	-	IS1479 transposase
2736	 63.99	0	3276579..3279377	-	932	58582668	clpB	XOO3045	-	ClpB
2737	 67.63	+1	3279317..3280357	-	346	58582669	-	XOO3046	-	hypothetical protein
2738	 65.50	0	3280291..3282168	-	625	58582670	-	XOO3047	-	hypothetical protein
2739	 64.09	0	3282172..3282675	-	167	58582671	-	XOO3048	-	hypothetical protein
2740	 67.03	0	3282663..3283496	-	277	58582672	-	XOO3049	-	hypothetical protein
2741	 58.53	-1	3283532..3284035	-	167	58582673	-	XOO3050	-	hypothetical protein
2742	 62.15	0	3284135..3285706	-	523	58582674	-	XOO3051	-	hypothetical protein
2743	 60.63	0	3285642..3286337	-	231	58582675	-	XOO3052	-	hypothetical protein
2744	 64.95	0	3286670..3287311	-	213	58582676	-	XOO3053	-	hypothetical protein
2745	 61.30	0	3287507..3288475	-	322	58582677	-	XOO3054	-	putative transposase
2746	 64.16	0	3288624..3289262	+	212	58582679	-	XOO3056	-	transposase
2747	 67.52	+1	3290771..3291826	-	351	58582683	-	XOO3060	-	hypothetical protein
2748	 45.93	-2	3291851..3292588	-	245	58582684	-	XOO3061	-	hypothetical protein
2749	 62.80	0	3292619..3295672	-	1017	58582685	-	XOO3062	-	hypothetical protein
2750	 56.03	-2	3295691..3296038	-	115	58582686	-	XOO3063	-	IS1404 transposase
2751	 61.20	0	3296041..3297009	+	322	58582687	-	XOO3064	-	putative transposase
2752	 66.90	0	3297271..3298992	-	573	122879238	-	XOO3065	-	hypothetical protein
2753	 65.88	0	3299108..3299743	-	211	58582689	-	XOO3066	-	hypothetical protein
2754	 64.21	0	3299706..3300152	+	148	58582690	phhB	XOO3067	-	pterin-4-alpha-carbinolamine dehydratase
2755	 69.98	+1	3300149..3300571	+	140	58582691	-	XOO3068	-	hypothetical protein
2756	 65.13	0	3300847..3301107	+	86	58582693	-	XOO3070	-	hypothetical protein
2757	 67.32	+1	3301423..3303246	+	607	58582694	-	XOO3071	-	hypothetical protein
2758	 66.26	0	3303279..3304265	-	328	58582695	rluC	XOO3072	-	pseudouridylate synthase
2759	 65.67	0	3304667..3308365	+	1232	122879239	rne	XOO3073	-	ribonuclease E
2760	 59.86	-1	3309787..3310506	-	239	58582700	gacA	XOO3077	-	LuxR/UhpA family transcriptional regulator
2761	 62.93	0	3310656..3311351	-	231	58582701	-	XOO3078	-	hypothetical protein
2762	 65.08	0	3311517..3312020	-	167	58582702	-	XOO3079	-	hypothetical protein
2763	 63.89	0	3312049..3312372	+	107	58582703	fkpA	XOO3080	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2764	 65.32	0	3312384..3313646	+	420	58582704	-	XOO3081	-	hypothetical protein
2765	 65.04	0	3313630..3314922	-	430	58582705	vipA	XOO3082	-	polysaccharide biosynthetic protein
2766	 63.30	0	3314905..3316062	+	385	58582706	-	XOO3083	-	phosphopantetheinyl transferase
2767	 61.44	0	3316108..3316815	+	235	58582707	-	XOO3084	-	putative ISXo8 transposase
2768	 63.03	0	3316819..3318054	-	411	58582708	-	XOO3085	-	transposase
2769	 62.64	0	3319354..3319701	-	115	58582711	-	XOO3088	-	hypothetical protein
2770	 60.42	0	3319937..3321040	+	367	58582712	tnp	XOO3089	-	transposase
2771	 62.96	0	3322112..3322327	-	71	58582715	-	XOO3092	-	IS1479 transposase
2772	 64.23	0	3323012..3323422	+	136	58582718	-	XOO3095	-	putative transposase
2773	 62.93	0	3324406..3325422	-	338	58582720	-	XOO3097	-	transposase
2774	 61.98	0	3326247..3326438	-	63	58582724	nasT	XOO3101	-	histidine kinase/response regulator hybrid protein
2775	 68.30	+1	3326579..3327556	+	325	122879240	cysG	XOO3102	-	siroheme synthase
2776	 64.87	0	3327766..3328155	+	129	58582726	pedG	XOO3103	-	putative FAD-dependent monooxygenase
2777	 67.85	+1	3328757..3329263	-	168	58582727	-	XOO3104	-	AraC-type DNA-binding domain-containing proteins
2778	 66.51	0	3330299..3330952	-	217	58582728	mobA	XOO3105	-	molybdopterin guanine dinucleotide synthase
2779	 67.15	0	3330906..3332159	-	417	58582729	moeA	XOO3106	-	molybdopterin biosynthesis
2780	 58.61	-1	3332383..3332742	+	119	58582730	-	XOO3107	-	hypothetical protein
2781	 63.03	0	3333249..3334265	+	338	58582732	-	XOO3109	-	transposase
2782	 61.20	0	3334486..3335034	-	182	58582733	-	XOO3110	-	putative ISXo8 transposase
2783	 58.91	-1	3335427..3335903	+	158	58582734	-	XOO3111	-	putative transposase
2784	 65.14	0	3336018..3338369	-	783	58582735	-	XOO3112	-	hypothetical protein
2785	 60.24	-1	3339105..3339524	-	139	58582737	btuB	XOO3114	-	TonB-dependent receptor
2786	 57.48	-1	3339567..3339947	-	126	58582738	btuB	XOO3115	-	TonB-dependent receptor
2787	 58.97	-1	3339986..3340492	-	168	58582739	btuB	XOO3116	-	TonB-dependent receptor
2788	 55.15	-2	3340547..3340711	+	54	58582740	tnpX1	XOO3117	-	IS1113 transposase
2789	 62.37	0	3340718..3341788	+	356	58582741	tnpX1	XOO3118	-	IS1113 transposase
2790	 65.11	0	3341798..3342886	-	362	58582742	btuB	XOO3119	-	TonB-dependent receptor
2791	 64.45	0	3343242..3345587	-	781	122879241	-	XOO3120	-	peptidase
2792	 65.27	0	3345909..3347624	-	571	58582744	xsa	XOO3121	-	xylosidase; arabinosidase
2793	 64.21	0	3347492..3351766	-	1424	58582745	-	XOO3122	-	hypothetical protein
2794	 61.30	0	3352095..3355040	-	981	58582746	btuB	XOO3123	-	TonB-dependent receptor
2795	 66.33	0	3355433..3357838	-	801	58582747	-	XOO3124	-	hypothetical protein
2796	 66.16	0	3358254..3359825	+	523	122879242	-	XOO3125	-	peptidase
2797	 60.96	0	3360032..3360364	-	110	58582749	-	XOO3126	-	hypothetical protein
2798	 66.50	0	3360673..3361263	-	196	58582750	-	XOO3127	-	hypothetical protein
2799	 70.00	+1	3361305..3361514	-	69	58582751	-	XOO3128	-	hypothetical protein
2800	 66.67	0	3361511..3361702	-	63	58582752	-	XOO3129	-	hypothetical protein
2801	 62.15	0	3361758..3362045	-	95	58582753	-	XOO3130	-	hypothetical protein
2802	 64.74	0	3362042..3364381	-	779	122879243	-	XOO3131	-	peptidase
2803	 63.20	0	3364371..3365957	-	528	58582755	yveA	XOO3132	-	amino acid permease
2804	 63.15	0	3366020..3367696	-	558	58582756	-	XOO3133	-	hypothetical protein
2805	 63.23	0	3367883..3369715	-	610	58582757	-	XOO3134	-	hypothetical protein
2806	 66.91	0	3369833..3371062	-	409	58582758	pepQ	XOO3135	-	proline dipeptidase
2807	 67.66	+1	3371029..3372645	-	538	122879244	-	XOO3136	-	ketoglutarate semialdehyde dehydrogenase
2808	 65.79	0	3372856..3373764	-	302	58582760	dapA	XOO3137	-	dihydrodipicolinate synthetase
2809	 69.21	+1	3373761..3375095	-	444	58582761	-	XOO3138	-	oxidoreductase
2810	 70.73	+1	3375067..3375312	-	81	58582762	soxA	XOO3139	-	sarcosine oxidase alpha subunit
2811	 70.70	+1	3375309..3376571	-	420	58582763	-	XOO3140	-	D-amino acid oxidase
2812	 65.98	0	3376571..3377596	-	341	58582764	-	XOO3141	-	hypothetical protein
2813	 61.87	0	3377655..3378383	+	242	58582765	-	XOO3142	-	transcriptional regulator
2814	 67.61	+1	3378399..3380204	+	601	58582766	ftsY	XOO3143	-	cell division protein
2815	 65.18	0	3380683..3381756	+	357	58582767	mutY	XOO3144	-	A/G-specific adenine glycosylase
2816	 62.00	0	3381759..3382058	+	99	58582768	-	XOO3145	-	hypothetical protein
2817	 60.53	0	3382758..3384044	-	428	58582770	fixL	XOO3147	-	sensor histidine kinase
2818	 62.69	0	3384922..3385701	+	259	58582771	-	XOO3148	-	IS1478 transposase
2819	 62.31	0	3385741..3386382	+	213	58582772	-	XOO3149	-	IS1478 transposase
2820	 63.66	0	3386372..3386836	+	154	58582773	-	XOO3150	-	hypothetical protein
2821	 69.84	+1	3386809..3386934	+	41	58582774	-	XOO3151	-	hypothetical protein
2822	 64.90	0	3386951..3387460	-	169	58582775	-	XOO3152	-	hypothetical protein
2823	 65.02	0	3387885..3388127	-	80	58582776	-	XOO3153	-	hypothetical protein
2824	 64.61	0	3389143..3390066	-	307	58582777	-	XOO3154	-	hypothetical protein
2825	 66.54	0	3390063..3390881	-	272	58582778	-	XOO3155	-	hypothetical protein
2826	 64.17	0	3390997..3391317	+	106	58582779	-	XOO3156	-	hypothetical protein
2827	 58.70	-1	3391824..3392300	-	158	58582780	-	XOO3157	-	putative transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.