IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2682	 64.61	0	3192859..3194073	+	404	58582607	-	XOO2984	-	hypothetical protein
2683	 65.14	0	3194177..3195289	-	370	58582608	-	XOO2985	-	hexosyltransferase
2684	 66.17	0	3195286..3196485	-	399	58582609	-	XOO2986	-	glycosyltransferase
2685	 67.83	+1	3196538..3197311	-	257	58582610	bioC	XOO2987	-	biotin synthesis protein
2686	 67.79	+1	3197233..3198480	-	415	58582611	-	XOO2988	-	hypothetical protein
2687	 66.19	0	3198481..3199323	-	280	58582612	-	XOO2989	-	methyltransferase
2688	 66.43	0	3199604..3200455	-	283	58582613	-	XOO2990	-	hypothetical protein
2689	 64.25	0	3201631..3202581	-	316	58582615	-	XOO2992	-	glycosyl transferase
2690	 63.40	0	3202578..3203831	-	417	58582616	-	XOO2993	-	lipopolysaccharide biosynthesis protein
2691	 63.11	0	3203828..3204952	-	374	58582617	-	XOO2994	-	aminotransferase
2692	 62.86	0	3204940..3205938	-	332	58582618	-	XOO2995	-	hypothetical protein
2693	 63.30	0	3205859..3206749	-	296	58582619	-	XOO2996	-	hypothetical protein
2694	 60.12	-1	3206816..3207502	-	228	58582620	-	XOO2997	-	hypothetical protein
2695	 61.57	0	3207484..3207915	-	143	58582621	-	XOO2998	-	hypothetical protein
2696	 68.63	+1	3208331..3208840	+	169	122879235	-	XOO2999	-	cytochrome like B561
2697	 64.22	0	3208837..3210264	+	475	58582623	-	XOO3000	-	cytochrome C
2698	 63.11	0	3210317..3210682	+	121	122879236	cycA	XOO3001	-	cytochrome C2
2699	 67.31	+1	3210834..3211913	+	359	58582625	-	XOO3002	-	hypothetical protein
2700	 64.81	0	3211965..3212558	+	197	58582626	rpoE	XOO3003	-	RNA polymerase sigma-E factor
2701	 68.04	+1	3212555..3213211	+	218	58582628	-	XOO3005	-	hypothetical protein
2702	 66.89	0	3213208..3214533	+	441	122879237	-	XOO3004	-	serine protease
2703	 63.90	0	3214544..3215302	+	252	58582629	ccmC	XOO3006	-	heme exporter protein C; cytochrome C-type biogenesis protein
2704	 68.12	+1	3215299..3215505	+	68	58582631	-	XOO3008	-	hypothetical protein
2705	 64.33	0	3215502..3215972	+	156	161898975	cycJ	XOO3007	-	cytochrome c-type biogenesis protein CcmE
2706	 64.91	0	3216036..3218024	+	662	58582632	cycK	XOO3009	-	C-type cytochrome biogenesis membrane protein
2707	 64.83	0	3218021..3218563	+	180	58582633	dsbE	XOO3010	-	C-type cytochrome biogenesis protein/thioredoxin
2708	 64.63	0	3218563..3219054	+	163	58582634	cycL	XOO3011	-	C-type cytochrome biogenesis protein
2709	 65.96	0	3219048..3219758	+	236	58582635	-	XOO3012	-	hypothetical protein
2710	 65.83	0	3219883..3223686	+	1267	58582636	pthA2	XOO3013	-	avirulence protein
2711	 66.82	0	3224466..3229838	+	1790	58582637	-	XOO3014	-	avirulence protein
2712	 65.83	0	3230618..3234457	+	1279	58582638	pthA3	XOO3015	-	avirulence protein
2713	 62.63	0	3234937..3235530	-	197	58582639	-	XOO3016	-	cation/multidrug efflux pump
2714	 65.06	0	3235520..3237010	-	496	58582640	-	XOO3017	-	IS1478 transposase
2715	 62.88	0	3237093..3239681	-	862	58582641	mexB	XOO3018	-	multidrug efflux transporter
2716	 67.30	0	3239738..3240850	-	370	58582642	-	XOO3019	-	hypothetical protein
2717	 67.36	+1	3240975..3241553	+	192	58582643	-	XOO3020	-	hypothetical protein
2718	 66.04	0	3243039..3245126	+	695	58582645	-	XOO3022	-	putative type III effector HolPsyAE
2719	 59.65	-1	3250458..3250799	+	113	58582649	-	XOO3026	-	IS1404 transposase
2720	 61.93	0	3250793..3251320	+	175	58582650	-	XOO3027	-	IS1404 transposase
2721	 64.63	0	3251283..3252068	-	261	58582651	-	XOO3028	-	putative transposase
2722	 56.49	-2	3252116..3252754	+	212	58582652	-	XOO3029	-	Tn5044 transposase
2723	 65.26	0	3253076..3253855	+	259	58582653	-	XOO3030	-	VirG-like two component response regulator
2724	 64.85	0	3253852..3254844	+	330	58582654	-	XOO3031	-	cytochrome C peroxidase
2725	 65.89	0	3254841..3257300	+	819	58582655	virA	XOO3032	-	VirA-like protein
2726	 66.16	0	3257414..3258394	+	326	58582656	-	XOO3033	-	hypothetical protein
2727	 66.47	0	3258391..3259431	+	346	58582657	-	XOO3034	-	hypothetical protein
2728	 69.83	+1	3259927..3262830	-	967	58582658	-	XOO3035	-	serine/threonine kinase
2729	 69.29	+1	3262827..3263549	-	240	58582659	ptc1	XOO3036	-	phosphoprotein phosphatase
2730	 68.35	+1	3263546..3264199	-	217	58582660	-	XOO3037	-	hypothetical protein
2731	 68.37	+1	3264190..3267648	-	1152	58582661	-	XOO3038	-	hypothetical protein
2732	 70.24	+1	3267652..3268968	-	438	58582662	-	XOO3039	-	hypothetical protein
2733	 70.29	+1	3271738..3272289	-	183	58582665	-	XOO3042	-	hypothetical protein
2734	 65.10	0	3272286..3274334	-	682	58582666	-	XOO3043	-	hypothetical protein
2735	 59.92	-1	3275021..3275272	-	83	58582667	-	XOO3044	-	IS1479 transposase
2736	 63.99	0	3276579..3279377	-	932	58582668	clpB	XOO3045	-	ClpB
2737	 67.63	+1	3279317..3280357	-	346	58582669	-	XOO3046	-	hypothetical protein
2738	 65.50	0	3280291..3282168	-	625	58582670	-	XOO3047	-	hypothetical protein
2739	 64.09	0	3282172..3282675	-	167	58582671	-	XOO3048	-	hypothetical protein
2740	 67.03	0	3282663..3283496	-	277	58582672	-	XOO3049	-	hypothetical protein
2741	 58.53	-1	3283532..3284035	-	167	58582673	-	XOO3050	-	hypothetical protein
2742	 62.15	0	3284135..3285706	-	523	58582674	-	XOO3051	-	hypothetical protein
2743	 60.63	0	3285642..3286337	-	231	58582675	-	XOO3052	-	hypothetical protein
2744	 64.95	0	3286670..3287311	-	213	58582676	-	XOO3053	-	hypothetical protein
2745	 61.30	0	3287507..3288475	-	322	58582677	-	XOO3054	-	putative transposase
2746	 64.16	0	3288624..3289262	+	212	58582679	-	XOO3056	-	transposase
2747	 67.52	+1	3290771..3291826	-	351	58582683	-	XOO3060	-	hypothetical protein
2748	 45.93	-2	3291851..3292588	-	245	58582684	-	XOO3061	-	hypothetical protein
2749	 62.80	0	3292619..3295672	-	1017	58582685	-	XOO3062	-	hypothetical protein
2750	 56.03	-2	3295691..3296038	-	115	58582686	-	XOO3063	-	IS1404 transposase
2751	 61.20	0	3296041..3297009	+	322	58582687	-	XOO3064	-	putative transposase
2752	 66.90	0	3297271..3298992	-	573	122879238	-	XOO3065	-	hypothetical protein
2753	 65.88	0	3299108..3299743	-	211	58582689	-	XOO3066	-	hypothetical protein
2754	 64.21	0	3299706..3300152	+	148	58582690	phhB	XOO3067	-	pterin-4-alpha-carbinolamine dehydratase
2755	 69.98	+1	3300149..3300571	+	140	58582691	-	XOO3068	-	hypothetical protein
2756	 65.13	0	3300847..3301107	+	86	58582693	-	XOO3070	-	hypothetical protein
2757	 67.32	+1	3301423..3303246	+	607	58582694	-	XOO3071	-	hypothetical protein
2758	 66.26	0	3303279..3304265	-	328	58582695	rluC	XOO3072	-	pseudouridylate synthase
2759	 65.67	0	3304667..3308365	+	1232	122879239	rne	XOO3073	-	ribonuclease E
2760	 59.86	-1	3309787..3310506	-	239	58582700	gacA	XOO3077	-	LuxR/UhpA family transcriptional regulator
2761	 62.93	0	3310656..3311351	-	231	58582701	-	XOO3078	-	hypothetical protein
2762	 65.08	0	3311517..3312020	-	167	58582702	-	XOO3079	-	hypothetical protein
2763	 63.89	0	3312049..3312372	+	107	58582703	fkpA	XOO3080	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2764	 65.32	0	3312384..3313646	+	420	58582704	-	XOO3081	-	hypothetical protein
2765	 65.04	0	3313630..3314922	-	430