IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2666	 71.19	+2	3174160..3174402	-	80	58582591	-	XOO2968	-	hypothetical protein
2667	 63.06	0	3174435..3176456	+	673	58582592	parE	XOO2969	-	DNA topoisomerase IV subunit B
2668	 58.70	-1	3176475..3176951	-	158	58582593	-	XOO2970	-	putative transposase
2669	 58.55	-1	3176917..3177384	-	155	58582594	-	XOO2971	-	putative transposase
2670	 63.82	0	3177689..3179197	+	502	122879233	-	XOO2972	-	carboxypeptidase-related protein
2671	 62.72	0	3179255..3179887	-	210	58582596	-	XOO2973	-	hypothetical protein
2672	 64.89	0	3180093..3181220	-	375	58582597	pitA	XOO2974	-	transport protein
2673	 60.83	0	3181230..3181880	-	216	58582598	-	XOO2975	-	hypothetical protein
2674	 63.39	0	3182129..3183469	+	446	58582599	tlyC	XOO2976	-	hemolysin
2675	 63.53	0	3183453..3184121	+	222	58582600	exoD	XOO2977	-	ExoD protein
2676	 62.08	0	3184153..3184653	-	166	58582601	-	XOO2978	-	general stress protein
2677	 65.77	0	3184714..3185715	-	333	122879234	-	XOO2979	-	hypothetical protein
2678	 63.91	0	3186520..3187935	+	471	58582603	-	XOO2980	-	MFS transporter
2679	 65.10	0	3188243..3190027	-	594	58582604	-	XOO2981	-	ABC transporter ATP-binding protein
2680	 64.99	0	3190058..3191128	-	356	58582605	-	XOO2982	-	hypothetical protein
2681	 62.45	0	3191087..3192769	+	560	58582606	-	XOO2983	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase
2682	 64.61	0	3192859..3194073	+	404	58582607	-	XOO2984	-	hypothetical protein
2683	 65.14	0	3194177..3195289	-	370	58582608	-	XOO2985	-	hexosyltransferase
2684	 66.17	0	3195286..3196485	-	399	58582609	-	XOO2986	-	glycosyltransferase
2685	 67.83	+1	3196538..3197311	-	257	58582610	bioC	XOO2987	-	biotin synthesis protein
2686	 67.79	+1	3197233..3198480	-	415	58582611	-	XOO2988	-	hypothetical protein
2687	 66.19	0	3198481..3199323	-	280	58582612	-	XOO2989	-	methyltransferase
2688	 66.43	0	3199604..3200455	-	283	58582613	-	XOO2990	-	hypothetical protein
2689	 64.25	0	3201631..3202581	-	316	58582615	-	XOO2992	-	glycosyl transferase
2690	 63.40	0	3202578..3203831	-	417	58582616	-	XOO2993	-	lipopolysaccharide biosynthesis protein
2691	 63.11	0	3203828..3204952	-	374	58582617	-	XOO2994	-	aminotransferase
2692	 62.86	0	3204940..3205938	-	332	58582618	-	XOO2995	-	hypothetical protein
2693	 63.30	0	3205859..3206749	-	296	58582619	-	XOO2996	-	hypothetical protein
2694	 60.12	-1	3206816..3207502	-	228	58582620	-	XOO2997	-	hypothetical protein
2695	 61.57	0	3207484..3207915	-	143	58582621	-	XOO2998	-	hypothetical protein
2696	 68.63	+1	3208331..3208840	+	169	122879235	-	XOO2999	-	cytochrome like B561
2697	 64.22	0	3208837..3210264	+	475	58582623	-	XOO3000	-	cytochrome C
2698	 63.11	0	3210317..3210682	+	121	122879236	cycA	XOO3001	-	cytochrome C2
2699	 67.31	+1	3210834..3211913	+	359	58582625	-	XOO3002	-	hypothetical protein
2700	 64.81	0	3211965..3212558	+	197	58582626	rpoE	XOO3003	-	RNA polymerase sigma-E factor
2701	 68.04	+1	3212555..3213211	+	218	58582628	-	XOO3005	-	hypothetical protein
2702	 66.89	0	3213208..3214533	+	441	122879237	-	XOO3004	-	serine protease
2703	 63.90	0	3214544..3215302	+	252	58582629	ccmC	XOO3006	-	heme exporter protein C; cytochrome C-type biogenesis protein
2704	 68.12	+1	3215299..3215505	+	68	58582631	-	XOO3008	-	hypothetical protein
2705	 64.33	0	3215502..3215972	+	156	161898975	cycJ	XOO3007	-	cytochrome c-type biogenesis protein CcmE
2706	 64.91	0	3216036..3218024	+	662	58582632	cycK	XOO3009	-	C-type cytochrome biogenesis membrane protein
2707	 64.83	0	3218021..3218563	+	180	58582633	dsbE	XOO3010	-	C-type cytochrome biogenesis protein/thioredoxin
2708	 64.63	0	3218563..3219054	+	163	58582634	cycL	XOO3011	-	C-type cytochrome biogenesis protein
2709	 65.96	0	3219048..3219758	+	236	58582635	-	XOO3012	-	hypothetical protein
2710	 65.83	0	3219883..3223686	+	1267	58582636	pthA2	XOO3013	-	avirulence protein
2711	 66.82	0	3224466..3229838	+	1790	58582637	-	XOO3014	-	avirulence protein
2712	 65.83	0	3230618..3234457	+	1279	58582638	pthA3	XOO3015	-	avirulence protein
2713	 62.63	0	3234937..3235530	-	197	58582639	-	XOO3016	-	cation/multidrug efflux pump
2714	 65.06	0	3235520..3237010	-	496	58582640	-	XOO3017	-	IS1478 transposase
2715	 62.88	0	3237093..3239681	-	862	58582641	mexB	XOO3018	-	multidrug efflux transporter
2716	 67.30	0	3239738..3240850	-	370	58582642	-	XOO3019	-	hypothetical protein
2717	 67.36	+1	3240975..3241553	+	192	58582643	-	XOO3020	-	hypothetical protein
2718	 66.04	0	3243039..3245126	+	695	58582645	-	XOO3022	-	putative type III effector HolPsyAE
2719	 59.65	-1	3250458..3250799	+	113	58582649	-	XOO3026	-	IS1404 transposase
2720	 61.93	0	3250793..3251320	+	175	58582650	-	XOO3027	-	IS1404 transposase
2721	 64.63	0	3251283..3252068	-	261	58582651	-	XOO3028	-	putative transposase
2722	 56.49	-2	3252116..3252754	+	212	58582652	-	XOO3029	-	Tn5044 transposase
2723	 65.26	0	3253076..3253855	+	259	58582653	-	XOO3030	-	VirG-like two component response regulator
2724	 64.85	0	3253852..3254844	+	330	58582654	-	XOO3031	-	cytochrome C peroxidase
2725	 65.89	0	3254841..3257300	+	819	58582655	virA	XOO3032	-	VirA-like protein
2726	 66.16	0	3257414..3258394	+	326	58582656	-	XOO3033	-	hypothetical protein
2727	 66.47	0	3258391..3259431	+	346	58582657	-	XOO3034	-	hypothetical protein
2728	 69.83	+1	3259927..3262830	-	967	58582658	-	XOO3035	-	serine/threonine kinase
2729	 69.29	+1	3262827..3263549	-	240	58582659	ptc1	XOO3036	-	phosphoprotein phosphatase
2730	 68.35	+1	3263546..3264199	-	217	58582660	-	XOO3037	-	hypothetical protein
2731	 68.37	+1	3264190..3267648	-	1152	58582661	-	XOO3038	-	hypothetical protein
2732	 70.24	+1	3267652..3268968	-	438	58582662	-	XOO3039	-	hypothetical protein
2733	 70.29	+1	3271738..3272289	-	183	58582665	-	XOO3042	-	hypothetical protein
2734	 65.10	0	3272286..3274334	-	682	58582666	-	XOO3043	-	hypothetical protein
2735	 59.92	-1	3275021..3275272	-	83	58582667	-	XOO3044	-	IS1479 transposase
2736	 63.99	0	3276579..3279377	-	932	58582668	clpB	XOO3045	-	ClpB
2737	 67.63	+1	3279317..3280357	-	346	58582669	-	XOO3046	-	hypothetical protein
2738	 65.50	0	3280291..3282168	-	625	58582670	-	XOO3047	-	hypothetical protein
2739	 64.09	0	3282172..3282675	-	167	58582671	-	XOO3048	-	hypothetical protein
2740	 67.03	0	3282663..3283496	-	277	58582672	-	XOO3049	-	hypothetical protein
2741	 58.53	-1	3283532..3284035	-	167	58582673	-	XOO3050	-	hypothetical protein
2742	 62.15	0	3284135..3285706	-	523	58582674	-	XOO3051	-	hypothetical protein
2743	 60.63	0	3285642..3286337	-	231	58582675	-	XOO3052	-	hypothetical protein
2744	 64.95	0	3286670..3287311	-	213	58582676	-	XOO3053	-	hypothetical protein
2745	 61.30	0	3287507..3288475	-	322	58582677	-	XOO3054	-	putative transposase
2746	 64.16	0	3288624..3289262	+	212	58582679	-	XOO3056	-	transposase
2747	 67.52	+1	3290771..3291826	-	351	58582683	-	XOO3060	-	hypothetical protein
2748	 45.93	-2	3291851..3292588	-	245	58582684	-	XOO3061	-	hypothetical protein
2749	 62.80	0	3292619..3295672	-	1017	58582685	-	XOO3062	-	hypothetical protein
2750	 56.03	-2	3295691..3296038	-	115	58582686	-	XOO3063	-	IS1404 transposase
2751	 61.20	0	3296041..3297009	+	322	58582687	-	XOO3064	-	putative transposase
2752	 66.90	0	3297271..3298992	-	573	122879238	-	XOO3065	-	hypothetical protein
2753	 65.88	0	3299108..3299743	-	211	58582689	-	XOO3066	-	hypothetical protein
2754	 64.21	0	3299706..3300152	+	148	58582690	phhB	XOO3067	-	pterin-4-alpha-carbinolamine dehydratase
2755	 69.98	+1	3300149..3300571	+	140	58582691	-	XOO3068	-	hypothetical protein
2756	 65.13	0	3300847..3301107	+	86	58582693	-	XOO3070	-	hypothetical protein
2757	 67.32	+1	3301423..3303246	+	607	58582694	-	XOO3071	-	hypothetical protein
2758	 66.26	0	3303279..3304265	-	328	58582695	rluC	XOO3072	-	pseudouridylate synthase
2759	 65.67	0	3304667..3308365	+	1232	122879239	rne	XOO3073	-	ribonuclease E
2760	 59.86	-1	3309787..3310506	-	239	58582700	gacA	XOO3077	-	LuxR/UhpA family transcriptional regulator
2761	 62.93	0	3310656..3311351	-	231	58582701	-	XOO3078	-	hypothetical protein
2762	 65.08	0	3311517..3312020	-	167	58582702	-	XOO3079	-	hypothetical protein
2763	 63.89	0	3312049..3312372	+	107	58582703	fkpA	XOO3080	-	FKBP-type peptidyl-prolyl cis-trans isomerase
2764	 65.32	0	3312384..3313646	+	420	58582704	-	XOO3081	-	hypothetical protein
2765	 65.04	0	3313630..3314922	-	430	58582705	vipA	XOO3082	-	polysaccharide biosynthetic protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.