IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2621	 69.26	+1	3130269..3131195	+	308	58582543	dgoK	XOO2920	-	2-oxo-3-deoxygalactonate kinase
2622	 61.11	0	3131278..3131601	+	107	58582544	-	XOO2921	-	ferredoxin
2623	 67.85	+1	3131726..3132319	-	197	58582545	-	XOO2922	-	hypothetical protein
2624	 67.88	+1	3132261..3133169	-	302	122879230	dapA	XOO2923	-	dihydrodipicolinate synthase
2625	 61.56	0	3133263..3133889	+	208	58582547	gcvR	XOO2924	-	glycine cleavage system transcriptional repressor
2626	 58.69	-1	3133901..3134251	+	116	58582548	-	XOO2925	-	hypothetical protein
2627	 61.49	0	3134289..3134771	+	160	58582549	-	XOO2926	-	bacterioferritin comigratory protein
2628	 61.87	0	3134854..3136251	+	465	122879231	-	XOO2927	-	hypothetical protein
2629	 65.68	0	3136818..3137627	+	269	58582551	thiD	XOO2928	-	phosphomethylpyrimidine kinase
2630	 67.68	+1	3137735..3137932	+	65	58582552	-	XOO2929	-	hypothetical protein
2631	 64.29	0	3138026..3138487	+	153	58582553	-	XOO2930	-	hypothetical protein
2632	 65.86	0	3138942..3139928	-	328	58582554	-	XOO2931	-	hypothetical protein
2633	 69.21	+1	3139973..3140917	-	314	58582555	-	XOO2932	-	transcriptional regulator
2634	 64.25	0	3141054..3141755	+	233	58582556	-	XOO2933	-	hypothetical protein
2635	 65.00	0	3142083..3142382	-	99	58582557	-	XOO2934	-	endolysin
2636	 62.34	0	3142425..3142655	-	76	58582558	rsc17	XOO2935	-	bacteriophage endolysin protein
2637	 60.40	0	3142899..3143648	-	249	58582559	-	XOO2936	-	isopentenyl transferase
2638	 64.77	0	3145221..3145748	-	175	58582560	-	XOO2937	-	hypothetical protein
2639	 57.75	-1	3146351..3146563	-	70	58582561	csrA	XOO2938	-	carbon storage regulator
2640	 62.89	0	3146703..3149351	-	882	58582562	alaS	XOO2939	-	alanyl-tRNA synthetase
2641	 63.07	0	3149453..3149980	-	175	58582563	recX	XOO2940	-	recombination regulator RecX
2642	 61.85	0	3150244..3151365	-	373	58582564	recA	XOO2941	-	recombinase A
2643	 63.86	0	3151451..3152128	-	225	58582565	lexA	XOO2942	-	LexA repressor
2644	 65.28	0	3152181..3153908	-	575	58582566	aarF	XOO2943	-	ubiquinone biosynthesis protein
2645	 65.45	0	3154335..3154829	-	164	58582567	-	XOO2944	-	hypothetical protein
2646	 65.30	0	3155261..3156580	-	439	58582568	hflX	XOO2945	-	GTP-binding protein
2647	 55.76	-2	3156592..3156921	-	109	58582569	hfq	XOO2946	-	RNA-binding protein Hfq
2648	 66.67	0	3156948..3158012	-	354	58582570	miaA	XOO2947	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2649	 63.07	0	3158953..3160899	-	648	58582572	hflB	XOO2949	-	cell division protein
2650	 63.41	0	3160955..3161629	-	224	58582573	ftsJ	XOO2950	-	cell division protein
2651	 61.11	0	3161653..3161958	+	101	58582574	-	XOO2951	-	hypothetical protein
2652	 64.00	0	3161974..3162348	+	124	58582575	-	XOO2952	-	hypothetical protein
2653	 65.92	0	3162541..3163341	-	266	58582576	nlpD	XOO2953	-	lipoprotein
2654	 63.58	0	3163311..3163925	-	204	58582577	-	XOO2954	-	hypothetical protein
2655	 67.85	+1	3163944..3164621	-	225	58582578	pcm	XOO2955	-	L-isoaspartate protein carboxylmethyltransferase type II
2656	 66.17	0	3164618..3165421	-	267	58582579	surE	XOO2956	-	stationary phase survival protein SurE
2657	 66.83	0	3165431..3166036	+	201	58582580	-	XOO2957	-	hypothetical protein
2658	 66.13	0	3166451..3167560	-	369	161898977	truD	XOO2959	-	tRNA pseudouridine synthase D
2659	 65.24	0	3167681..3168172	-	163	58582583	ispF	XOO2960	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2660	 68.01	+1	3168328..3169146	-	272	58582584	ispD	XOO2961	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2661	 63.93	0	3169143..3169508	-	121	58582585	ftsB	XOO2962	-	cell division protein FtsB
2662	 64.12	0	3169512..3170885	-	457	58582586	eno	XOO2963	-	phosphopyruvate hydratase
2663	 64.29	0	3170929..3171180	-	83	58582587	-	XOO2964	-	hypothetical protein
2664	 63.06	0	3171287..3172117	-	276	122879232	kdsA	XOO2966	-	2-dehydro-3-deoxyphosphooctonate aldolase
2665	 63.60	0	3172321..3173985	-	554	161898976	pyrG	XOO2967	-	CTP synthetase
2666	 71.19	+2	3174160..3174402	-	80	58582591	-	XOO2968	-	hypothetical protein
2667	 63.06	0	3174435..3176456	+	673	58582592	parE	XOO2969	-	DNA topoisomerase IV subunit B
2668	 58.70	-1	3176475..3176951	-	158	58582593	-	XOO2970	-	putative transposase
2669	 58.55	-1	3176917..3177384	-	155	58582594	-	XOO2971	-	putative transposase
2670	 63.82	0	3177689..3179197	+	502	122879233	-	XOO2972	-	carboxypeptidase-related protein
2671	 62.72	0	3179255..3179887	-	210	58582596	-	XOO2973	-	hypothetical protein
2672	 64.89	0	3180093..3181220	-	375	58582597	pitA	XOO2974	-	transport protein
2673	 60.83	0	3181230..3181880	-	216	58582598	-	XOO2975	-	hypothetical protein
2674	 63.39	0	3182129..3183469	+	446	58582599	tlyC	XOO2976	-	hemolysin
2675	 63.53	0	3183453..3184121	+	222	58582600	exoD	XOO2977	-	ExoD protein
2676	 62.08	0	3184153..3184653	-	166	58582601	-	XOO2978	-	general stress protein
2677	 65.77	0	3184714..3185715	-	333	122879234	-	XOO2979	-	hypothetical protein
2678	 63.91	0	3186520..3187935	+	471	58582603	-	XOO2980	-	MFS transporter
2679	 65.10	0	3188243..3190027	-	594	58582604	-	XOO2981	-	ABC transporter ATP-binding protein
2680	 64.99	0	3190058..3191128	-	356	58582605	-	XOO2982	-	hypothetical protein
2681	 62.45	0	3191087..3192769	+	560	58582606	-	XOO2983	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase
2682	 64.61	0	3192859..3194073	+	404	58582607	-	XOO2984	-	hypothetical protein
2683	 65.14	0	3194177..3195289	-	370	58582608	-	XOO2985	-	hexosyltransferase
2684	 66.17	0	3195286..3196485	-	399	58582609	-	XOO2986	-	glycosyltransferase
2685	 67.83	+1	3196538..3197311	-	257	58582610	bioC	XOO2987	-	biotin synthesis protein
2686	 67.79	+1	3197233..3198480	-	415	58582611	-	XOO2988	-	hypothetical protein
2687	 66.19	0	3198481..3199323	-	280	58582612	-	XOO2989	-	methyltransferase
2688	 66.43	0	3199604..3200455	-	283	58582613	-	XOO2990	-	hypothetical protein
2689	 64.25	0	3201631..3202581	-	316	58582615	-	XOO2992	-	glycosyl transferase
2690	 63.40	0	3202578..3203831	-	417	58582616	-	XOO2993	-	lipopolysaccharide biosynthesis protein
2691	 63.11	0	3203828..3204952	-	374	58582617	-	XOO2994	-	aminotransferase
2692	 62.86	0	3204940..3205938	-	332	58582618	-	XOO2995	-	hypothetical protein
2693	 63.30	0	3205859..3206749	-	296	58582619	-	XOO2996	-	hypothetical protein
2694	 60.12	-1	3206816..3207502	-	228	58582620	-	XOO2997	-	hypothetical protein
2695	 61.57	0	3207484..3207915	-	143	58582621	-	XOO2998	-	hypothetical protein
2696	 68.63	+1	3208331..3208840	+	169	122879235	-	XOO2999	-	cytochrome like B561
2697	 64.22	0	3208837..3210264	+	475	58582623	-	XOO3000	-	cytochrome C
2698	 63.11	0	3210317..3210682	+	121	122879236	cycA	XOO3001	-	cytochrome C2
2699	 67.31	+1	3210834..3211913	+	359	58582625	-	XOO3002	-	hypothetical protein
2700	 64.81	0	3211965..3212558	+	197	58582626	rpoE	XOO3003	-	RNA polymerase sigma-E factor
2701	 68.04	+1	3212555..3213211	+	218	58582628	-	XOO3005	-	hypothetical protein
2702	 66.89	0	3213208..3214533	+	441	122879237	-	XOO3004	-	serine protease
2703	 63.90	0	3214544..3215302	+	252	58582629	ccmC	XOO3006	-	heme exporter protein C; cytochrome C-type biogenesis protein
2704	 68.12	+1	3215299..3215505	+	68	58582631	-	XOO3008	-	hypothetical protein
2705	 64.33	0	3215502..3215972	+	156	161898975	cycJ	XOO3007	-	cytochrome c-type biogenesis protein CcmE
2706	 64.91	0	3216036..3218024	+	662	58582632	cycK	XOO3009	-	C-type cytochrome biogenesis membrane protein
2707	 64.83	0	3218021..3218563	+	180	58582633	dsbE	XOO3010	-	C-type cytochrome biogenesis protein/thioredoxin
2708	 64.63	0	3218563..3219054	+	163	58582634	cycL	XOO3011	-	C-type cytochrome biogenesis protein
2709	 65.96	0	3219048..3219758	+	236	58582635	-	XOO3012	-	hypothetical protein
2710	 65.83	0	3219883..3223686	+	1267	58582636	pthA2	XOO3013	-	avirulence protein
2711	 66.82	0	3224466..3229838	+	1790	58582637	-	XOO3014	-	avirulence protein
2712	 65.83	0	3230618..3234457	+	1279	58582638	pthA3	XOO3015	-	avirulence protein
2713	 62.63	0	3234937..3235530	-	197	58582639	-	XOO3016	-	cation/multidrug efflux pump
2714	 65.06	0	3235520..3237010	-	496	58582640	-	XOO3017	-	IS1478 transposase
2715	 62.88	0	3237093..3239681	-	862	58582641	mexB	XOO3018	-	multidrug efflux transporter
2716	 67.30	0	3239738..3240850	-	370	58582642	-	XOO3019	-	hypothetical protein
2717	 67.36	+1	3240975..3241553	+	192	58582643	-	XOO3020	-	hypothetical protein
2718	 66.04	0	3243039..3245126	+	695	58582645	-	XOO3022	-	putative type III effector HolPsyAE
2719	 59.65	-1	3250458..3250799	+	113	58582649	-	XOO3026	-	IS1404 transposase
2720	 61.93	0	3250793..3251320	+	175	58582650	-	XOO3027	-	IS1404 transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.