IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2619	 64.58	0	3128267..3129415	+	382	58582542	dgoA	XOO2919	-	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase
2620	 65.57	0	3129409..3130320	+	303	122879229	-	XOO2918	-	regucalcin
2621	 69.26	+1	3130269..3131195	+	308	58582543	dgoK	XOO2920	-	2-oxo-3-deoxygalactonate kinase
2622	 61.11	0	3131278..3131601	+	107	58582544	-	XOO2921	-	ferredoxin
2623	 67.85	+1	3131726..3132319	-	197	58582545	-	XOO2922	-	hypothetical protein
2624	 67.88	+1	3132261..3133169	-	302	122879230	dapA	XOO2923	-	dihydrodipicolinate synthase
2625	 61.56	0	3133263..3133889	+	208	58582547	gcvR	XOO2924	-	glycine cleavage system transcriptional repressor
2626	 58.69	-1	3133901..3134251	+	116	58582548	-	XOO2925	-	hypothetical protein
2627	 61.49	0	3134289..3134771	+	160	58582549	-	XOO2926	-	bacterioferritin comigratory protein
2628	 61.87	0	3134854..3136251	+	465	122879231	-	XOO2927	-	hypothetical protein
2629	 65.68	0	3136818..3137627	+	269	58582551	thiD	XOO2928	-	phosphomethylpyrimidine kinase
2630	 67.68	+1	3137735..3137932	+	65	58582552	-	XOO2929	-	hypothetical protein
2631	 64.29	0	3138026..3138487	+	153	58582553	-	XOO2930	-	hypothetical protein
2632	 65.86	0	3138942..3139928	-	328	58582554	-	XOO2931	-	hypothetical protein
2633	 69.21	+1	3139973..3140917	-	314	58582555	-	XOO2932	-	transcriptional regulator
2634	 64.25	0	3141054..3141755	+	233	58582556	-	XOO2933	-	hypothetical protein
2635	 65.00	0	3142083..3142382	-	99	58582557	-	XOO2934	-	endolysin
2636	 62.34	0	3142425..3142655	-	76	58582558	rsc17	XOO2935	-	bacteriophage endolysin protein
2637	 60.40	0	3142899..3143648	-	249	58582559	-	XOO2936	-	isopentenyl transferase
2638	 64.77	0	3145221..3145748	-	175	58582560	-	XOO2937	-	hypothetical protein
2639	 57.75	-1	3146351..3146563	-	70	58582561	csrA	XOO2938	-	carbon storage regulator
2640	 62.89	0	3146703..3149351	-	882	58582562	alaS	XOO2939	-	alanyl-tRNA synthetase
2641	 63.07	0	3149453..3149980	-	175	58582563	recX	XOO2940	-	recombination regulator RecX
2642	 61.85	0	3150244..3151365	-	373	58582564	recA	XOO2941	-	recombinase A
2643	 63.86	0	3151451..3152128	-	225	58582565	lexA	XOO2942	-	LexA repressor
2644	 65.28	0	3152181..3153908	-	575	58582566	aarF	XOO2943	-	ubiquinone biosynthesis protein
2645	 65.45	0	3154335..3154829	-	164	58582567	-	XOO2944	-	hypothetical protein
2646	 65.30	0	3155261..3156580	-	439	58582568	hflX	XOO2945	-	GTP-binding protein
2647	 55.76	-2	3156592..3156921	-	109	58582569	hfq	XOO2946	-	RNA-binding protein Hfq
2648	 66.67	0	3156948..3158012	-	354	58582570	miaA	XOO2947	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2649	 63.07	0	3158953..3160899	-	648	58582572	hflB	XOO2949	-	cell division protein
2650	 63.41	0	3160955..3161629	-	224	58582573	ftsJ	XOO2950	-	cell division protein
2651	 61.11	0	3161653..3161958	+	101	58582574	-	XOO2951	-	hypothetical protein
2652	 64.00	0	3161974..3162348	+	124	58582575	-	XOO2952	-	hypothetical protein
2653	 65.92	0	3162541..3163341	-	266	58582576	nlpD	XOO2953	-	lipoprotein
2654	 63.58	0	3163311..3163925	-	204	58582577	-	XOO2954	-	hypothetical protein
2655	 67.85	+1	3163944..3164621	-	225	58582578	pcm	XOO2955	-	L-isoaspartate protein carboxylmethyltransferase type II
2656	 66.17	0	3164618..3165421	-	267	58582579	surE	XOO2956	-	stationary phase survival protein SurE
2657	 66.83	0	3165431..3166036	+	201	58582580	-	XOO2957	-	hypothetical protein
2658	 66.13	0	3166451..3167560	-	369	161898977	truD	XOO2959	-	tRNA pseudouridine synthase D
2659	 65.24	0	3167681..3168172	-	163	58582583	ispF	XOO2960	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2660	 68.01	+1	3168328..3169146	-	272	58582584	ispD	XOO2961	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2661	 63.93	0	3169143..3169508	-	121	58582585	ftsB	XOO2962	-	cell division protein FtsB
2662	 64.12	0	3169512..3170885	-	457	58582586	eno	XOO2963	-	phosphopyruvate hydratase
2663	 64.29	0	3170929..3171180	-	83	58582587	-	XOO2964	-	hypothetical protein
2664	 63.06	0	3171287..3172117	-	276	122879232	kdsA	XOO2966	-	2-dehydro-3-deoxyphosphooctonate aldolase
2665	 63.60	0	3172321..3173985	-	554	161898976	pyrG	XOO2967	-	CTP synthetase
2666	 71.19	+2	3174160..3174402	-	80	58582591	-	XOO2968	-	hypothetical protein
2667	 63.06	0	3174435..3176456	+	673	58582592	parE	XOO2969	-	DNA topoisomerase IV subunit B
2668	 58.70	-1	3176475..3176951	-	158	58582593	-	XOO2970	-	putative transposase
2669	 58.55	-1	3176917..3177384	-	155	58582594	-	XOO2971	-	putative transposase
2670	 63.82	0	3177689..3179197	+	502	122879233	-	XOO2972	-	carboxypeptidase-related protein
2671	 62.72	0	3179255..3179887	-	210	58582596	-	XOO2973	-	hypothetical protein
2672	 64.89	0	3180093..3181220	-	375	58582597	pitA	XOO2974	-	transport protein
2673	 60.83	0	3181230..3181880	-	216	58582598	-	XOO2975	-	hypothetical protein
2674	 63.39	0	3182129..3183469	+	446	58582599	tlyC	XOO2976	-	hemolysin
2675	 63.53	0	3183453..3184121	+	222	58582600	exoD	XOO2977	-	ExoD protein
2676	 62.08	0	3184153..3184653	-	166	58582601	-	XOO2978	-	general stress protein
2677	 65.77	0	3184714..3185715	-	333	122879234	-	XOO2979	-	hypothetical protein
2678	 63.91	0	3186520..3187935	+	471	58582603	-	XOO2980	-	MFS transporter
2679	 65.10	0	3188243..3190027	-	594	58582604	-	XOO2981	-	ABC transporter ATP-binding protein
2680	 64.99	0	3190058..3191128	-	356	58582605	-	XOO2982	-	hypothetical protein
2681	 62.45	0	3191087..3192769	+	560	58582606	-	XOO2983	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase
2682	 64.61	0	3192859..3194073	+	404	58582607	-	XOO2984	-	hypothetical protein
2683	 65.14	0	3194177..3195289	-	370	58582608	-	XOO2985	-	hexosyltransferase
2684	 66.17	0	3195286..3196485	-	399	58582609	-	XOO2986	-	glycosyltransferase
2685	 67.83	+1	3196538..3197311	-	257	58582610	bioC	XOO2987	-	biotin synthesis protein
2686	 67.79	+1	3197233..3198480	-	415	58582611	-	XOO2988	-	hypothetical protein
2687	 66.19	0	3198481..3199323	-	280	58582612	-	XOO2989	-	methyltransferase
2688	 66.43	0	3199604..3200455	-	283	58582613	-	XOO2990	-	hypothetical protein
2689	 64.25	0	3201631..3202581	-	316	58582615	-	XOO2992	-	glycosyl transferase
2690	 63.40	0	3202578..3203831	-	417	58582616	-	XOO2993	-	lipopolysaccharide biosynthesis protein
2691	 63.11	0	3203828..3204952	-	374	58582617	-	XOO2994	-	aminotransferase
2692	 62.86	0	3204940..3205938	-	332	58582618	-	XOO2995	-	hypothetical protein
2693	 63.30	0	3205859..3206749	-	296	58582619	-	XOO2996	-	hypothetical protein
2694	 60.12	-1	3206816..3207502	-	228	58582620	-	XOO2997	-	hypothetical protein
2695	 61.57	0	3207484..3207915	-	143	58582621	-	XOO2998	-	hypothetical protein
2696	 68.63	+1	3208331..3208840	+	169	122879235	-	XOO2999	-	cytochrome like B561
2697	 64.22	0	3208837..3210264	+	475	58582623	-	XOO3000	-	cytochrome C
2698	 63.11	0	3210317..3210682	+	121	122879236	cycA	XOO3001	-	cytochrome C2
2699	 67.31	+1	3210834..3211913	+	359	58582625	-	XOO3002	-	hypothetical protein
2700	 64.81	0	3211965..3212558	+	197	58582626	rpoE	XOO3003	-	RNA polymerase sigma-E factor
2701	 68.04	+1	3212555..3213211	+	218	58582628	-	XOO3005	-	hypothetical protein
2702	 66.8