IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2566	 65.83	0	3065459..3066535	+	358	58582482	cheB	XOO2859	-	chemotaxis-specific methylesterase
2567	 62.83	0	3066701..3068887	+	728	122879223	pdeA	XOO2860	-	c-di-GMP phosphodiesterase A
2568	 63.48	0	3069543..3070358	-	271	122879224	pcaD	XOO2861	-	beta-ketoadipate enol-lactone hydrolase
2569	 65.24	0	3070712..3073303	-	863	58582485	acnB	XOO2862	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2570	 64.48	0	3073369..3073779	-	136	58582486	-	XOO2863	-	hypothetical protein
2571	 61.90	0	3073776..3074048	-	90	58582487	-	XOO2864	-	hypothetical protein
2572	 65.01	0	3074172..3076940	+	922	58582488	rpfA	XOO2865	-	aconitate hydratase
2573	 63.86	0	3077063..3077347	-	94	58582489	-	XOO2866	-	hypothetical protein
2574	 55.77	-2	3077400..3077555	-	51	58582490	-	XOO2867	-	hypothetical protein
2575	 61.09	0	3077677..3079272	+	531	58582491	rpfB	XOO2868	-	putative long-chain fatty acyl CoA ligase
2576	 60.64	0	3079323..3080318	+	331	58582492	rpfF	XOO2869	-	enoyl-CoA hydratase
2577	 62.26	0	3080330..3082507	-	725	58582493	rpfC	XOO2870	-	RpfC
2578	 62.86	0	3082872..3084131	-	419	58582494	rpfG	XOO2871	-	response regulator
2579	 66.16	0	3084150..3085736	-	528	58582495	lysS	XOO2872	-	lysyl-tRNA synthetase
2580	 63.74	0	3085871..3086860	-	329	58582496	prfB	XOO2873	-	peptide chain release factor 2
2581	 66.48	0	3087250..3088332	-	360	58582497	rpfD	XOO2874	-	regulatory protein
2582	 62.90	0	3088306..3089607	+	433	58582498	-	XOO2875	-	inner membrane protein
2583	 72.68	+2	3089687..3089869	+	60	58582500	rpfI	XOO2877	-	regulatory protein
2584	 65.09	0	3089860..3090240	+	126	58582501	rpfI	XOO2878	-	regulatory protein
2585	 65.79	0	3090225..3090452	+	75	58582502	rpfI	XOO2879	-	regulatory protein
2586	 64.96	0	3091005..3091706	+	233	122879225	-	XOO2880	-	hypothetical protein
2587	 57.56	-1	3091867..3092349	-	160	58582504	-	XOO2881	-	hypothetical protein
2588	 62.33	0	3092539..3093507	-	322	58582505	-	XOO2882	-	transposase
2589	 63.13	0	3093835..3094851	-	338	58582506	-	XOO2883	-	transposase
2590	 66.03	0	3095548..3097287	-	579	58582507	recJ	XOO2884	-	single-stranded-DNA-specific exonuclease
2591	 67.54	+1	3097284..3098204	-	306	58582508	rpfE	XOO2885	-	regulatory protein
2592	 62.77	0	3098221..3098733	-	170	58582509	greA	XOO2886	-	transcription elongation factor GreA
2593	 63.98	0	3098694..3101936	-	1080	161898980	carB	XOO2887	-	carbamoyl phosphate synthase large subunit
2594	 65.07	0	3102388..3103512	-	374	161898979	carA	XOO2888	-	carbamoyl phosphate synthase small subunit
2595	 54.81	-2	3105224..3105670	-	148	58582516	-	XOO2893	-	transposase
2596	 66.81	0	3105696..3106415	-	239	58582517	-	XOO2894	-	hypothetical protein
2597	 65.25	0	3106412..3107614	-	400	58582518	avtA	XOO2895	-	valine-pyruvate aminotransferase
2598	 64.08	0	3107848..3108156	-	102	58582519	-	XOO2896	-	hypothetical protein
2599	 59.65	-1	3108184..3108411	-	75	58582520	-	XOO2897	-	hypothetical protein
2600	 67.84	+1	3108468..3108722	-	84	58582521	-	XOO2898	-	hypothetical protein
2601	 66.51	0	3108724..3110589	-	621	58582522	feoB	XOO2899	-	ferrous iron transport protein B
2602	 63.57	0	3110580..3110870	-	96	58582523	feoA	XOO2900	-	ferrous iron transport protein
2603	 67.17	0	3110943..3111740	+	265	58582524	-	XOO2901	-	enoyl-CoA hydratase
2604	 65.38	0	3111737..3112126	+	129	58582525	-	XOO2902	-	hypothetical protein
2605	 68.04	+1	3112197..3113216	+	339	58582526	mvaB	XOO2903	-	hydroxymethylglutaryl-CoA lyase
2606	 67.70	+1	3113233..3114003	+	256	122879226	hadH2	XOO2904	-	3-hydroxyacyl-CoA dehydrogenase type II
2607	 61.38	0	3114125..3114691	+	188	58582528	yeiP	XOO2905	-	elongation factor P
2608	 61.97	0	3114844..3115077	+	77	58582529	-	XOO2906	-	hypothetical protein
2609	 61.15	0	3115584..3116036	-	150	58582530	-	XOO2907	-	hypothetical protein
2610	 63.90	0	3116940..3118385	-	481	122879227	xylE	XOO2909	-	MFS transporter
2611	 62.03	0	3118452..3119789	-	445	58582533	xylA	XOO2910	-	xylose isomerase
2612	 65.27	0	3119838..3121343	-	501	58582534	-	XOO2911	-	D-xylulokinase
2613	 64.36	0	3121328..3121891	-	187	58582535	-	XOO2912	-	hypothetical protein
2614	 66.16	0	3121675..3122463	-	262	58582536	-	XOO2913	-	hypothetical protein
2615	 62.84	0	3122549..3125452	-	967	122879228	xylS	XOO2914	-	alpha-xylosidase
2616	 62.04	0	3125733..3126056	+	107	58582538	-	XOO2915	-	relaxation protein
2617	 64.35	0	3126254..3127291	-	345	58582539	gbpR	XOO2916	-	galactose-binding protein regulator
2618	 67.30	0	3127638..3128270	+	210	161898978	dgoA	XOO2917	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
2619	 64.58	0	3128267..3129415	+	382	58582542	dgoA	XOO2919	-	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase
2620	 65.57	0	3129409..3130320	+	303	122879229	-	XOO2918	-	regucalcin
2621	 69.26	+1	3130269..3131195	+	308	58582543	dgoK	XOO2920	-	2-oxo-3-deoxygalactonate kinase
2622	 61.11	0	3131278..3131601	+	107	58582544	-	XOO2921	-	ferredoxin
2623	 67.85	+1	3131726..3132319	-	197	58582545	-	XOO2922	-	hypothetical protein
2624	 67.88	+1	3132261..3133169	-	302	122879230	dapA	XOO2923	-	dihydrodipicolinate synthase
2625	 61.56	0	3133263..3133889	+	208	58582547	gcvR	XOO2924	-	glycine cleavage system transcriptional repressor
2626	 58.69	-1	3133901..3134251	+	116	58582548	-	XOO2925	-	hypothetical protein
2627	 61.49	0	3134289..3134771	+	160	58582549	-	XOO2926	-	bacterioferritin comigratory protein
2628	 61.87	0	3134854..3136251	+	465	122879231	-	XOO2927	-	hypothetical protein
2629	 65.68	0	3136818..3137627	+	269	58582551	thiD	XOO2928	-	phosphomethylpyrimidine kinase
2630	 67.68	+1	3137735..3137932	+	65	58582552	-	XOO2929	-	hypothetical protein
2631	 64.29	0	3138026..3138487	+	153	58582553	-	XOO2930	-	hypothetical protein
2632	 65.86	0	3138942..3139928	-	328	58582554	-	XOO2931	-	hypothetical protein
2633	 69.21	+1	3139973..3140917	-	314	58582555	-	XOO2932	-	transcriptional regulator
2634	 64.25	0	3141054..3141755	+	233	58582556	-	XOO2933	-	hypothetical protein
2635	 65.00	0	3142083..3142382	-	99	58582557	-	XOO2934	-	endolysin
2636	 62.34	0	3142425..3142655	-	76	58582558	rsc17	XOO2935	-	bacteriophage endolysin protein
2637	 60.40	0	3142899..3143648	-	249	58582559	-	XOO2936	-	isopentenyl transferase
2638	 64.77	0	3145221..3145748	-	175	58582560	-	XOO2937	-	hypothetical protein
2639	 57.75	-1	3146351..3146563	-	70	58582561	csrA	XOO2938	-	carbon storage regulator
2640	 62.89	0	3146703..3149351	-	882	58582562	alaS	XOO2939	-	alanyl-tRNA synthetase
2641	 63.07	0	3149453..3149980	-	175	58582563	recX	XOO2940	-	recombination regulator RecX
2642	 61.85	0	3150244..3151365	-	373	58582564	recA	XOO2941	-	recombinase A
2643	 63.86	0	3151451..3152128	-	225	58582565	lexA	XOO2942	-	LexA repressor
2644	 65.28	0	3152181..3153908	-	575	58582566	aarF	XOO2943	-	ubiquinone biosynthesis protein
2645	 65.45	0	3154335..3154829	-	164	58582567	-	XOO2944	-	hypothetical protein
2646	 65.30	0	3155261..3156580	-	439	58582568	hflX	XOO2945	-	GTP-binding protein
2647	 55.76	-2	3156592..3156921	-	109	58582569	hfq	XOO2946	-	RNA-binding protein Hfq
2648	 66.67	0	3156948..3158012	-	354	58582570	miaA	XOO2947	-	tRNA