IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2249	 62.89	0	2651466..2652497	+	343	58582127	-	XOO2504	-	putative transposase
2250	 65.93	0	2652504..2654258	-	584	58582128	ggt	XOO2505	-	gamma-glutamyltranspeptidase
2251	 60.86	0	2654294..2654620	-	108	58582129	-	XOO2506	-	ferredoxin
2252	 61.83	0	2654810..2655367	-	185	58582130	-	XOO2507	-	hypothetical protein
2253	 64.30	0	2655354..2655860	-	168	58582131	coaD	XOO2508	-	phosphopantetheine adenylyltransferase
2254	 72.62	+2	2655857..2656477	-	206	122879195	-	XOO2509	-	hypothetical protein
2255	 62.37	0	2656784..2658622	+	612	58582133	htpG	XOO2510	-	heat shock protein 90
2256	 62.18	0	2659802..2661184	+	460	58582136	-	XOO2513	-	putative ISXo8 transposase
2257	 64.82	0	2661436..2662575	+	379	122879196	moeB	XOO2514	-	molybdopterin biosynthesis protein MoeB
2258	 53.74	-2	2662572..2662718	-	48	58582138	-	XOO2515	-	transposase
2259	 63.13	0	2662801..2663817	+	338	58582139	-	XOO2516	-	transposase
2260	 62.79	0	2663795..2665186	-	463	122879197	-	XOO2517	-	IS1478 transposase
2261	 63.10	0	2665306..2665473	-	55	58582141	-	XOO2518	-	transposase
2262	 54.05	-2	2665470..2665691	-	73	58582142	-	XOO2519	-	transposase
2263	 63.24	0	2665957..2667006	+	349	58582143	-	XOO2520	-	ISxac1 transposase
2264	 57.83	-1	2667092..2667634	-	180	58582144	-	XOO2521	-	IS30 family transposase
2265	 59.49	-1	2667665..2667859	-	64	58582145	-	XOO2522	-	hypothetical protein
2266	 54.04	-2	2668195..2668392	-	65	58582146	-	XOO2523	-	transposase
2267	 64.77	0	2668745..2669008	+	87	58582147	-	XOO2524	-	putative transposase
2268	 65.37	0	2669063..2669449	+	128	58582148	-	XOO2525	-	putative transposase
2269	 61.81	0	2669431..2669718	+	95	58582149	-	XOO2526	-	putative transposase
2270	 66.01	0	2670000..2671220	-	406	58582151	moeA	XOO2528	-	molybdopterin biosynthesis
2271	 62.45	0	2671535..2672932	-	465	161898989	engA	XOO2529	-	GTP-binding protein EngA
2272	 63.88	0	2672943..2674163	-	406	58582153	-	XOO2530	-	hypothetical protein
2273	 62.60	0	2674160..2674798	-	212	58582154	-	XOO2531	-	hypothetical protein
2274	 64.81	0	2674869..2675729	-	286	58582155	-	XOO2532	-	hypothetical protein
2275	 62.12	0	2675726..2676538	-	270	58582156	pilF	XOO2533	-	fimbrial biogenesis protein
2276	 62.19	0	2676525..2677730	-	401	58582157	-	XOO2534	-	hypothetical protein
2277	 62.68	0	2677749..2678174	-	141	58582158	ndk	XOO2535	-	nucleoside diphosphate kinase
2278	 64.61	0	2678394..2679026	+	210	58582159	-	XOO2536	-	TetR family transcriptional regulator
2279	 64.77	0	2679051..2681423	+	790	58582160	fadB	XOO2537	-	3-hydroxyacyl-CoA dehydrogenase
2280	 65.84	0	2681581..2682786	+	401	58582161	fadA	XOO2538	-	acetyl-CoA acetyltransferase
2281	 63.81	0	2683107..2684438	+	443	58582162	-	XOO2539	-	hypothetical protein
2282	 60.71	0	2684721..2685224	+	167	58582163	crcB	XOO2540	-	hypothetical protein
2283	 57.80	-1	2685221..2685547	+	108	58582164	-	XOO2541	-	hypothetical protein
2284	 63.11	0	2685579..2686955	-	458	161898988	-	XOO2542	-	recombination factor protein RarA
2285	 63.23	0	2687192..2691358	+	1388	122879198	-	XOO2543	-	hypothetical protein
2286	 61.90	0	2691471..2692100	-	209	161898987	lolA	XOO2544	-	outer-membrane lipoprotein carrier protein
2287	 64.44	0	2692207..2694135	-	642	58582168	-	XOO2545	-	hypothetical protein
2288	 65.44	0	2694298..2696658	-	786	58582169	ftsK	XOO2546	-	cell division protein
2289	 66.15	0	2696942..2697910	+	322	58582170	trxB	XOO2547	-	thioredoxin reductase
2290	 65.12	0	2697923..2699089	+	388	58582171	-	XOO2548	-	hypothetical protein
2291	 62.87	0	2699315..2699683	+	122	58582172	-	XOO2549	-	hypothetical protein
2292	 64.18	0	2699982..2700383	+	133	58582173	-	XOO2550	-	hypothetical protein
2293	 66.42	0	2700472..2701269	+	265	58582174	aat	XOO2551	-	leucyl/phenylalanyl-tRNA--protein transferase
2294	 54.43	-2	2701332..2701568	+	78	58582175	infA	XOO2552	-	translation initiation factor IF-1
2295	 62.11	0	2701849..2704131	-	760	58582176	clpA	XOO2553	-	ATP-dependent Clp protease subunit
2296	 59.84	-1	2704275..2704655	-	126	58582177	clpS	XOO2554	-	ATP-dependent Clp protease adaptor protein ClpS
2297	 65.01	0	2704822..2705304	+	160	58582178	mutT	XOO2555	-	7,8-dihydro-8-oxoguanine-triphosphatase
2298	 66.93	0	2705301..2706437	+	378	58582179	trmU	XOO2556	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2299	 67.48	+1	2706434..2707051	+	205	58582180	-	XOO2557	-	hypothetical protein
2300	 62.75	0	2707112..2708389	+	425	58582181	mcp	XOO2558	-	chemotaxis protein
2301	 70.14	+1	2708475..2708762	+	95	58582182	-	XOO2559	-	hypothetical protein
2302	 59.80	-1	2709037..2709720	+	227	58582183	-	XOO2560	-	hypothetical protein
2303	 63.61	0	2710191..2712707	-	838	122879199	-	XOO2561	-	hypothetical protein
2304	 65.26	0	2713098..2715230	+	710	58582185	-	XOO2562	-	HrpX related protein
2305	 63.47	0	2715234..2716955	+	573	58582186	pdeA	XOO2563	-	c-di-GMP phosphodiesterase A
2306	 61.45	0	2717084..2718310	-	408	58582187	-	XOO2564	-	histidine kinase
2307	 66.07	0	2718476..2718808	-	110	58582188	-	XOO2565	-	hypothetical protein
2308	 62.50	0	2718824..2719135	-	103	58582189	flgM	XOO2566	-	flagellar protein
2309	 67.29	0	2719202..2719846	-	214	58582190	flgA	XOO2567	-	flagellar basal body P-ring biosynthesis protein FlgA
2310	 64.87	0	2720205..2721149	+	314	58582191	cheV	XOO2568	-	chemotaxis protein
2311	 64.91	0	2721464..2721862	+	132	58582192	flgB	XOO2569	-	flagellar basal body rod protein FlgB
2312	 65.10	0	2721890..2722273	+	127	58582193	flgC	XOO2570	-	flagellar basal body rod protein FlgC
2313	 59.91	-1	2722311..2722976	+	221	58582194	flgD	XOO2571	-	flagellar basal body rod modification protein
2314	 63.48	0	2723008..2724231	+	407	58582195	flgE	XOO2572	-	flagellar hook protein FlgE
2315	 63.10	0	2724377..2725132	+	251	161898986	flgF	XOO2574	-	flagellar basal body rod protein FlgF
2316	 65.14	0	2725713..2726498	+	261	161898985	flgG	XOO2575	-	flagellar basal body rod protein FlgG
2317	 67.24	0	2726536..2727228	+	230	58582199	flgH	XOO2576	-	flagellar basal body L-ring protein
2318	 66.22	0	2727239..2728357	+	372	58582200	flgI	XOO2577	-	flagellar basal body P-ring protein
2319	 66.07	0	2728359..2729537	+	392	58582201	flgJ	XOO2578	-	peptidoglycan hydrolase
2320	 65.49	0	2729549..2731423	+	624	58582202	flgK	XOO2579	-	flagellar hook-associated protein FlgK
2321	 63.76	0	2731423..2732628	+	401	58582203	flgL	XOO2580	-	flagellar hook-associated protein FlgL
2322	 62.92	0	2732948..2734147	+	399	161898984	fliC	XOO2581	-	flagellin
2323	 63.88	0	2734419..2735744	+	441	58582205	fliD	XOO2582	-	flagellar protein
2324	 62.08	0	2735895..2736308	+	137	58582206	fliS	XOO2583	-	flagellar protein
2325	 62.42	0	2736305..2736610	+	101	58582207	-	XOO2584	-	hypothetical protein
2326	 65.61	0	2736610..2737176	+	188	58582208	-	XOO2585	-	hypothetical protein
2327	 64.14	0	2737247..2737879	+	210	58582209	-	XOO2586	-	response regulator
2328	 66.95	0	2738103..2739506	+	467	58582210	rpoN	XOO2587	-	RNA polymerase sigma-54 factor
2329	 58.01	-1	2739515..2739895	+	126	58582211	-	XOO2588	-	response regulator
2330	 65.93	0	2739892..2741376	+	494	58582212	fleQ	XOO2589	-	transcriptional regulator
2331	 62.28	0	2741282..2742604	+	440