IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2223	 62.33	0	2621656..2623038	+	460	58582092	-	XOO2469	-	putative ISXo8 transposase
2224	 62.38	0	2623275..2624276	-	333	122879191	-	XOO2470	-	putative transposase
2225	 61.51	0	2624369..2625571	+	400	122879192	tnpX1	XOO2471	-	IS1113 transposase
2226	 58.40	-1	2629824..2630198	+	124	58582102	-	XOO2479	-	site-specific recombinase
2227	 60.47	0	2630279..2631247	-	322	58582104	secF	XOO2481	-	preprotein translocase subunit SecF
2228	 63.63	0	2631342..2633186	-	614	58582105	secD	XOO2482	-	preprotein translocase subunit SecD
2229	 63.56	0	2633383..2633736	-	117	58582106	yajC	XOO2483	-	preprotein translocase subunit YajC
2230	 65.01	0	2633868..2635013	-	381	58582107	tgt	XOO2484	-	queuine tRNA-ribosyltransferase
2231	 67.51	+1	2635083..2636267	-	394	58582108	queA	XOO2485	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2232	 66.44	0	2636319..2636750	-	143	58582109	-	XOO2486	-	AsnC/Lrp family transcriptional regulator
2233	 66.27	0	2636874..2638370	+	498	58582110	-	XOO2487	-	L-lysine 6-aminotransferase
2234	 61.30	0	2638715..2639422	-	235	122879193	-	XOO2488	-	hypothetical protein
2235	 62.15	0	2639813..2640100	-	95	58582112	-	XOO2489	-	hypothetical protein
2236	 59.88	-1	2640143..2640304	-	53	58582113	-	XOO2490	-	hypothetical protein
2237	 66.67	0	2640317..2640628	-	103	58582114	-	XOO2491	-	hypothetical protein
2238	 63.46	0	2640628..2641407	+	259	58582115	-	XOO2492	-	IS1478 transposase
2239	 61.87	0	2641535..2642347	+	270	58582116	-	XOO2493	-	putative ISXo8 transposase
2240	 61.96	0	2642328..2642837	+	169	58582117	-	XOO2494	-	putative ISXo8 transposase
2241	 60.99	0	2643076..2644044	+	322	58582118	-	XOO2495	-	putative transposase
2242	 62.89	0	2644260..2644736	+	158	58582119	-	XOO2496	-	IS1478 transposase
2243	 64.21	0	2644843..2645289	-	148	58582120	-	XOO2497	-	hypothetical protein
2244	 62.59	0	2645290..2645436	-	48	58582121	-	XOO2498	-	hypothetical protein
2245	 62.83	0	2645388..2646509	-	373	58582122	phy	XOO2499	-	putative phytase precursor
2246	 61.40	0	2646506..2648746	-	746	122879194	cirA	XOO2500	-	TonB-dependent receptor
2247	 66.03	0	2649394..2650026	+	210	161898990	upp	XOO2501	-	uracil phosphoribosyltransferase
2248	 54.81	-2	2650396..2650842	+	148	58582125	-	XOO2502	-	transposase
2249	 62.89	0	2651466..2652497	+	343	58582127	-	XOO2504	-	putative transposase
2250	 65.93	0	2652504..2654258	-	584	58582128	ggt	XOO2505	-	gamma-glutamyltranspeptidase
2251	 60.86	0	2654294..2654620	-	108	58582129	-	XOO2506	-	ferredoxin
2252	 61.83	0	2654810..2655367	-	185	58582130	-	XOO2507	-	hypothetical protein
2253	 64.30	0	2655354..2655860	-	168	58582131	coaD	XOO2508	-	phosphopantetheine adenylyltransferase
2254	 72.62	+2	2655857..2656477	-	206	122879195	-	XOO2509	-	hypothetical protein
2255	 62.37	0	2656784..2658622	+	612	58582133	htpG	XOO2510	-	heat shock protein 90
2256	 62.18	0	2659802..2661184	+	460	58582136	-	XOO2513	-	putative ISXo8 transposase
2257	 64.82	0	2661436..2662575	+	379	122879196	moeB	XOO2514	-	molybdopterin biosynthesis protein MoeB
2258	 53.74	-2	2662572..2662718	-	48	58582138	-	XOO2515	-	transposase
2259	 63.13	0	2662801..2663817	+	338	58582139	-	XOO2516	-	transposase
2260	 62.79	0	2663795..2665186	-	463	122879197	-	XOO2517	-	IS1478 transposase
2261	 63.10	0	2665306..2665473	-	55	58582141	-	XOO2518	-	transposase
2262	 54.05	-2	2665470..2665691	-	73	58582142	-	XOO2519	-	transposase
2263	 63.24	0	2665957..2667006	+	349	58582143	-	XOO2520	-	ISxac1 transposase
2264	 57.83	-1	2667092..2667634	-	180	58582144	-	XOO2521	-	IS30 family transposase
2265	 59.49	-1	2667665..2667859	-	64	58582145	-	XOO2522	-	hypothetical protein
2266	 54.04	-2	2668195..2668392	-	65	58582146	-	XOO2523	-	transposase
2267	 64.77	0	2668745..2669008	+	87	58582147	-	XOO2524	-	putative transposase
2268	 65.37	0	2669063..2669449	+	128	58582148	-	XOO2525	-	putative transposase
2269	 61.81	0	2669431..2669718	+	95	58582149	-	XOO2526	-	putative transposase
2270	 66.01	0	2670000..2671220	-	406	58582151	moeA	XOO2528	-	molybdopterin biosynthesis
2271	 62.45	0	2671535..2672932	-	465	161898989	engA	XOO2529	-	GTP-binding protein EngA
2272	 63.88	0	2672943..2674163	-	406	58582153	-	XOO2530	-	hypothetical protein
2273	 62.60	0	2674160..2674798	-	212	58582154	-	XOO2531	-	hypothetical protein
2274	 64.81	0	2674869..2675729	-	286	58582155	-	XOO2532	-	hypothetical protein
2275	 62.12	0	2675726..2676538	-	270	58582156	pilF	XOO2533	-	fimbrial biogenesis protein
2276	 62.19	0	2676525..2677730	-	401	58582157	-	XOO2534	-	hypothetical protein
2277	 62.68	0	2677749..2678174	-	141	58582158	ndk	XOO2535	-	nucleoside diphosphate kinase
2278	 64.61	0	2678394..2679026	+	210	58582159	-	XOO2536	-	TetR family transcriptional regulator
2279	 64.77	0	2679051..2681423	+	790	58582160	fadB	XOO2537	-	3-hydroxyacyl-CoA dehydrogenase
2280	 65.84	0	2681581..2682786	+	401	58582161	fadA	XOO2538	-	acetyl-CoA acetyltransferase
2281	 63.81	0	2683107..2684438	+	443	58582162	-	XOO2539	-	hypothetical protein
2282	 60.71	0	2684721..2685224	+	167	58582163	crcB	XOO2540	-	hypothetical protein
2283	 57.80	-1	2685221..2685547	+	108	58582164	-	XOO2541	-	hypothetical protein
2284	 63.11	0	2685579..2686955	-	458	161898988	-	XOO2542	-	recombination factor protein RarA
2285	 63.23	0	2687192..2691358	+	1388	122879198	-	XOO2543	-	hypothetical protein
2286	 61.90	0	2691471..2692100	-	209	161898987	lolA	XOO2544	-	outer-membrane lipoprotein carrier protein
2287	 64.44	0	2692207..2694135	-	642	58582168	-	XOO2545	-	hypothetical protein
2288	 65.44	0	2694298..2696658	-	786	58582169	ftsK	XOO2546	-	cell division protein
2289	 66.15	0	2696942..2697910	+	322	58582170	trxB	XOO2547	-	thioredoxin reductase
2290	 65.12	0	2697923..2699089	+	388	58582171	-	XOO2548	-	hypothetical protein
2291	 62.87	0	2699315..2699683	+	122	58582172	-	XOO2549	-	hypothetical protein
2292	 64.18	0	2699982..2700383	+	133	58582173	-	XOO2550	-	hypothetical protein
2293	 66.42	0	2700472..2701269	+	265	58582174	aat	XOO2551	-	leucyl/phenylalanyl-tRNA--protein transferase
2294	 54.43	-2	2701332..2701568	+	78	58582175	infA	XOO2552	-	translation initiation factor IF-1
2295	 62.11	0	2701849..2704131	-	760	58582176	clpA	XOO2553	-	ATP-dependent Clp protease subunit
2296	 59.84	-1	2704275..2704655	-	126	58582177	clpS	XOO2554	-	ATP-dependent Clp protease adaptor protein ClpS
2297	 65.01	0	2704822..2705304	+	160	58582178	mutT	XOO2555	-	7,8-dihydro-8-oxoguanine-triphosphatase
2298	 66.93	0	2705301..2706437	+	378	58582179	trmU	XOO2556	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2299	 67.48	+1	2706434..2707051	+	205	58582180	-	XOO2557	-	hypothetical protein
2300	 62.75	0	2707112..2708389	+	425	58582181	mcp	XOO2558	-	chemotaxis protein
2301	 70.14	+1	2708475..2708762	+	95	58582182	-	XOO2559	-	hypothetical protein
2302	 59.80	-1	2709037..2709720	+	227	58582183	-	XOO2560	-	hypothetical protein
2303	 63.61	0	2710191..2712707	-	838	122879199	-	XOO2561	-	hypothetical protein
2304	 65.26	0	2713098..2715230	+	710	58582185	-	XOO2562	-	HrpX related protein
2305	 63.47	0	2715234..2716955	+	573	58582186	pdeA	XOO2563	-	c-di-GMP phosphodiesterase A
2306	 61.45	0	2717084..2718310	-	408	58582187	-	XOO2564	-	histidine kinase
2307	 66.07	0	2718476..2718808	-	110	58582188	-	XOO2565	-	hypothetical protein
2308	 62.50	0	2718824..2719135	-	103	58582189	flgM	XOO2566	-	flagellar protein
2309	 67.29	0	2719202..2719846	-	214	58582190	flgA	XOO2567	-	flagellar basal body P-ring biosynthesis protein FlgA
2310	 64.87	0	2720205..2721149	+	314	58582191	cheV	XOO2568	-	chemotaxis protein
2311	 64.91	0	2721464..2721862	+	132	58582192	flgB	XOO2569	-	flagellar basal body rod protein FlgB
2312	 65.10	0	2721890..2722273	+	127	58582193	flgC	XOO2570	-	flagellar basal body rod protein FlgC
2313	 59.91	-1	2722311..2722976	+	221	58582194	flgD	XOO2571	-	flagellar basal body rod modification protein
2314	 63.48	0	2723008..2724231	+	407	58582195	flgE	XOO2572	-	flagellar hook protein FlgE
2315	 63.10	0	2724377..2725132	+	251	161898986	flgF	XOO2574	-	flagellar basal body rod protein FlgF
2316	 65.14	0	2725713..2726498	+	261	161898985	flgG	XOO2575	-	flagellar basal body rod protein FlgG
2317	 67.24	0	2726536..2727228	+	230	58582199	flgH	XOO2576	-	flagellar basal body L-ring protein
2318	 66.22	0	2727239..2728357	+	372	58582200	flgI	XOO2577	-	flagellar basal body P-ring protein
2319	 66.07	0	2728359..2729537	+	392	58582201	flgJ	XOO2578	-	peptidoglycan hydrolase
2320	 65.49	0	2729549..2731423	+	624	58582202	flgK	XOO2579	-	flagellar hook-associated protein FlgK
2321	 63.76	0	2731423..2732628	+	401	58582203	flgL	XOO2580	-	flagellar hook-associated protein FlgL
2322	 62.92	0	2732948..2734147	+	399	161898984	fliC	XOO2581	-	flagellin
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.