IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2140	 64.70	0	2523399..2527973	+	1524	58582000	czcA	XOO2377	-	cation efflux system protein
2141	 65.74	0	2528038..2529114	+	358	122879179	nodV	XOO2378	-	nodulation protein
2142	 64.05	0	2529111..2529722	+	203	58582002	nodW	XOO2379	-	nodulation protein
2143	 64.78	0	2529999..2538197	-	2732	58582003	yapH	XOO2380	-	YapH protein
2144	 62.24	0	2538239..2539639	+	466	58582004	-	XOO2381	-	putative ISXo8 transposase
2145	 60.99	0	2539852..2540820	-	322	58582005	-	XOO2382	-	putative transposase
2146	 47.93	-2	2541397..2542410	+	337	58582006	-	XOO2383	-	hypothetical protein
2147	 58.14	-1	2542522..2542650	+	42	58582007	-	XOO2384	-	IS1595 transposase
2148	 59.09	-1	2542699..2542962	+	87	121632108	-	XOO4828	-	IS1404 transposase
2149	 62.60	0	2542815..2543651	+	278	58582008	-	XOO2385	-	IS1478 transposase
2150	 66.52	0	2543675..2544997	-	440	58582009	aroA	XOO2386	-	3-phosphoshikimate 1-carboxyvinyltransferase
2151	 61.87	0	2545119..2546327	-	402	58582010	pheA	XOO2387	-	P-protein
2152	 64.64	0	2546376..2547461	-	361	58582011	serC	XOO2388	-	phosphoserine aminotransferase
2153	 63.44	0	2547612..2548604	+	330	58582012	-	XOO2389	-	putative sulfite oxidase subunit YedY
2154	 67.28	0	2549502..2550311	-	269	122879180	-	XOO2391	-	hypothetical protein
2155	 66.30	0	2550552..2550827	+	91	58582015	-	XOO2392	-	hypothetical protein
2156	 67.02	0	2550989..2551552	+	187	58582016	phaF	XOO2393	-	poly(hydroxyalcanoate) granule associated protein
2157	 67.64	+1	2552194..2553120	+	308	58582017	-	XOO2394	-	hypothetical protein
2158	 66.10	0	2553277..2553981	-	234	122879181	hutC	XOO2395	-	histidine utilization repressor
2159	 68.44	+1	2554339..2555694	-	451	122879183	sdeB	XOO2397	-	N-formimino-L-glutamate deiminase
2160	 67.83	+1	2555770..2556975	+	401	122879182	hutI	XOO2396	-	imidazolonepropionase
2161	 66.61	0	2556899..2558530	+	543	58582021	hutH	XOO2398	-	histidine ammonia-lyase
2162	 65.50	0	2558709..2559566	+	285	122879184	hutG	XOO2399	-	formylglutamate amidohydrolase
2163	 66.07	0	2559583..2561250	+	555	122879185	hutU	XOO2400	-	urocanate hydratase
2164	 58.08	-1	2561610..2562704	+	364	58582024	-	XOO2401	-	acyltransferase, putative
2165	 62.07	0	2563152..2563586	+	144	122879186	-	XOO2402	-	hypothetical protein
2166	 64.38	0	2563708..2564232	-	174	58582026	-	XOO2403	-	IS1404 transposase
2167	 58.52	-1	2564226..2564495	-	89	58582027	-	XOO2404	-	IS1404 transposase
2168	 62.29	0	2564622..2567318	-	898	58582029	gyrA	XOO2406	-	DNA gyrase subunit A
2169	 68.17	+1	2567529..2568593	-	354	161898992	mtnA	XOO2407	-	methylthioribose-1-phosphate isomerase
2170	 66.55	0	2568794..2569627	-	277	58582031	-	XOO2408	-	hypothetical protein
2171	 66.67	0	2569590..2570552	-	320	58582032	lysS	XOO2409	-	lysyl-tRNA synthetase
2172	 59.46	-1	2570549..2573074	-	841	122879187	ligA	XOO2410	-	NAD-dependent DNA ligase LigA
2173	 62.41	0	2573231..2573371	+	46	58582034	hisC	XOO2411	-	aminotransferase
2174	 64.89	0	2573930..2574661	-	243	58582035	zipA	XOO2412	-	cell division protein ZipA
2175	 65.63	0	2574718..2578374	-	1218	58582036	smc	XOO2413	-	chromosome segregation protein
2176	 64.22	0	2578431..2578880	-	149	58582037	rplI	XOO2414	-	50S ribosomal protein L9
2177	 57.58	-1	2579147..2579377	-	76	58582038	rpsR	XOO2415	-	30S ribosomal protein S18
2178	 61.11	0	2579389..2579820	-	143	58582039	rpsF	XOO2416	-	30S ribosomal protein S6
2179	 64.88	0	2580175..2580621	-	148	58582040	-	XOO2417	-	hypothetical protein
2180	 63.30	0	2580720..2582114	+	464	58582041	asnC	XOO2418	-	asparaginyl-tRNA synthetase
2181	 69.38	+1	2582116..2582373	+	85	58582042	-	XOO2419	-	hypothetical protein
2182	 66.36	0	2582672..2582998	+	108	58582043	-	XOO2420	-	hypothetical protein
2183	 64.36	0	2583336..2583638	+	100	58582045	paiB	XOO2422	-	transcriptional regulator protein Pai2
2184	 60.50	0	2583625..2584386	+	253	58582046	yadF	XOO2423	-	carbonic anhydrase
2185	 59.22	-1	2584442..2585005	+	187	58582047	haaO	XOO2424	-	3-hydroxyanthranilate 3,4-dioxygenase
2186	 69.75	+1	2585018..2585665	+	215	58582048	-	XOO2425	-	hypothetical protein
2187	 67.32	+1	2585915..2587147	+	410	58582050	-	XOO2427	-	hypothetical protein
2188	 68.16	+1	2587206..2588477	+	423	58582051	-	XOO2428	-	kynureninase
2189	 65.72	0	2588649..2590016	+	455	58582052	-	XOO2429	-	kynurenine 3-monooxygenase
2190	 63.90	0	2590320..2591765	+	481	161898991	sbcB	XOO2430	-	exonuclease I
2191	 59.53	-1	2591762..2592448	+	228	58582054	-	XOO2431	-	hypothetical protein
2192	 64.31	0	2592421..2593440	+	339	58582055	-	XOO2432	-	putative oxidoreductase
2193	 62.92	0	2593482..2594042	+	186	58582056	-	XOO2433	-	hypothetical protein
2194	 64.89	0	2594063..2595019	-	318	58582057	-	XOO2434	-	5'-nucleotidase
2195	 58.06	-1	2596193..2596564	+	123	58582059	-	XOO2436	-	putative transposase
2196	 58.49	-1	2596530..2597006	+	158	58582060	-	XOO2437	-	putative transposase
2197	 67.09	0	2597298..2599433	-	711	58582061	-	XOO2438	-	23S rRNA m(2)G2445 methyltransferase
2198	 69.89	+1	2600003..2600281	-	92	58582063	-	XOO2440	-	ABC transporter ATP-binding protein
2199	 67.72	+1	2600287..2601237	-	316	58582064	-	XOO2441	-	ABC transporter ATP-binding protein
2200	 69.82	+1	2601396..2601902	-	168	122879188	-	XOO2442	-	acetyltransferase
2201	 67.80	+1	2601943..2602470	-	175	122879189	-	XOO2443	-	hypothetical protein
2202	 69.28	+1	2602467..2602811	-	114	58582067	-	XOO2444	-	hypothetical protein
2203	 62.67	0	2602983..2603558	+	191	58582068	-	XOO2445	-	hypothetical protein
2204	 65.93	0	2603635..2604588	-	317	58582069	-	XOO2446	-	hypothetical protein
2205	 68.96	+1	2604677..2605549	-	290	58582070	sseA	XOO2447	-	thiosulfate sulfurtransferase
2206	 66.38	0	2605546..2606253	-	235	58582071	-	XOO2448	-	MutT/nudix family protein
2207	 64.74	0	2606492..2606647	-	51	58582073	-	XOO2450	-	peptidyl-prolyl cis-trans isomerase
2208	 62.25	0	2606786..2607193	-	135	58582074	-	XOO2451	-	peptidyl-prolyl cis-trans isomerase
2209	 64.11	0	2607354..2608136	+	260	58582075	crt	XOO2452	-	3-hydroxybutyryl-CoA dehydratase
2210	 70.97	+2	2608145..2608516	+	123	58582076	-	XOO2453	-	hypothetical protein
2211	 62.87	0	2608513..2609223	+	236	58582077	nth	XOO2454	-	endonuclease III
2212	 64.48	0	2610533..2611081	-	182	58582080	cynT	XOO2457	-	carbonic anhydrase
2213	 54.59	-2	2611552..2611998	-	148	58582082	-	XOO2459	-	transposase
2214	 62.83	0	2612805..2614055	+	416	58582083	oprO	XOO2460	-	polyphosphate-selective porin O
2215	 62.11	0	2614146..2615264	+	372	58582084	phoX	XOO2461	-	phosphate binding protein
2216	 65.00	0	2615405..2616541	+	378	58582085	pstS	XOO2462	-	ABC transporter phosphate binding protein
2217	 64.00	0	2616654..2617628	+	324	58582086	pstC	XOO2463	-	ABC transporter phosphate permease
2218	 62.76	0	2617628..2618497	+	289	58582087	pstA	XOO2464	-	ABC transporter phosphate permease
2219	 60.77	0	2618520..2619350	+	276	122879190	pstB	XOO2465	-	phosphate ABC transporter ATP-binding protein
2220	 64.35	0	2619413..2620189	+	258	58582089	phoU	XOO2466	-	phosphate regulon transcriptional regulator
2221	 63.73	0	2620322..2620729	+	135	58582090	-	XOO2467	-	hypothetical protein
2222	 63.36	0	2621013..2621648	+	211	58582