IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2130	 66.67	0	2508001..2508843	-	280	58581986	panC	XOO2363	-	pantoate--beta-alanine ligase
2131	 67.52	+1	2508840..2509655	-	271	58581987	panB	XOO2364	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2132	 70.16	+1	2509691..2510176	-	161	58581988	folK	XOO2365	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
2133	 64.77	0	2510180..2511547	-	455	58581989	pcnB	XOO2366	-	polynucleotide adenyltransferase
2134	 64.85	0	2512163..2513206	-	347	58581990	-	XOO2367	-	putative GTP cyclohydrolase
2135	 65.91	0	2513121..2514317	-	398	58581991	amiC	XOO2368	-	N-acetylmuramoyl-L-alanine amidase
2136	 60.54	0	2516276..2516422	+	48	58581994	nagN	XOO2371	-	IS1404 transposase
2137	 63.91	0	2516858..2518234	-	458	122879178	-	XOO2374	-	IS1478 transposase
2138	 66.01	0	2519066..2521801	+	911	58581998	-	XOO2375	-	serine protease
2139	 66.11	0	2522144..2523406	+	420	58581999	czcB	XOO2376	-	cation efflux system protein
2140	 64.70	0	2523399..2527973	+	1524	58582000	czcA	XOO2377	-	cation efflux system protein
2141	 65.74	0	2528038..2529114	+	358	122879179	nodV	XOO2378	-	nodulation protein
2142	 64.05	0	2529111..2529722	+	203	58582002	nodW	XOO2379	-	nodulation protein
2143	 64.78	0	2529999..2538197	-	2732	58582003	yapH	XOO2380	-	YapH protein
2144	 62.24	0	2538239..2539639	+	466	58582004	-	XOO2381	-	putative ISXo8 transposase
2145	 60.99	0	2539852..2540820	-	322	58582005	-	XOO2382	-	putative transposase
2146	 47.93	-2	2541397..2542410	+	337	58582006	-	XOO2383	-	hypothetical protein
2147	 58.14	-1	2542522..2542650	+	42	58582007	-	XOO2384	-	IS1595 transposase
2148	 59.09	-1	2542699..2542962	+	87	121632108	-	XOO4828	-	IS1404 transposase
2149	 62.60	0	2542815..2543651	+	278	58582008	-	XOO2385	-	IS1478 transposase
2150	 66.52	0	2543675..2544997	-	440	58582009	aroA	XOO2386	-	3-phosphoshikimate 1-carboxyvinyltransferase
2151	 61.87	0	2545119..2546327	-	402	58582010	pheA	XOO2387	-	P-protein
2152	 64.64	0	2546376..2547461	-	361	58582011	serC	XOO2388	-	phosphoserine aminotransferase
2153	 63.44	0	2547612..2548604	+	330	58582012	-	XOO2389	-	putative sulfite oxidase subunit YedY
2154	 67.28	0	2549502..2550311	-	269	122879180	-	XOO2391	-	hypothetical protein
2155	 66.30	0	2550552..2550827	+	91	58582015	-	XOO2392	-	hypothetical protein
2156	 67.02	0	2550989..2551552	+	187	58582016	phaF	XOO2393	-	poly(hydroxyalcanoate) granule associated protein
2157	 67.64	+1	2552194..2553120	+	308	58582017	-	XOO2394	-	hypothetical protein
2158	 66.10	0	2553277..2553981	-	234	122879181	hutC	XOO2395	-	histidine utilization repressor
2159	 68.44	+1	2554339..2555694	-	451	122879183	sdeB	XOO2397	-	N-formimino-L-glutamate deiminase
2160	 67.83	+1	2555770..2556975	+	401	122879182	hutI	XOO2396	-	imidazolonepropionase
2161	 66.61	0	2556899..2558530	+	543	58582021	hutH	XOO2398	-	histidine ammonia-lyase
2162	 65.50	0	2558709..2559566	+	285	122879184	hutG	XOO2399	-	formylglutamate amidohydrolase
2163	 66.07	0	2559583..2561250	+	555	122879185	hutU	XOO2400	-	urocanate hydratase
2164	 58.08	-1	2561610..2562704	+	364	58582024	-	XOO2401	-	acyltransferase, putative
2165	 62.07	0	2563152..2563586	+	144	122879186	-	XOO2402	-	hypothetical protein
2166	 64.38	0	2563708..2564232	-	174	58582026	-	XOO2403	-	IS1404 transposase
2167	 58.52	-1	2564226..2564495	-	89	58582027	-	XOO2404	-	IS1404 transposase
2168	 62.29	0	2564622..2567318	-	898	58582029	gyrA	XOO2406	-	DNA gyrase subunit A
2169	 68.17	+1	2567529..2568593	-	354	161898992	mtnA	XOO2407	-	methylthioribose-1-phosphate isomerase
2170	 66.55	0	2568794..2569627	-	277	58582031	-	XOO2408	-	hypothetical protein
2171	 66.67	0	2569590..2570552	-	320	58582032	lysS	XOO2409	-	lysyl-tRNA synthetase
2172	 59.46	-1	2570549..2573074	-	841	122879187	ligA	XOO2410	-	NAD-dependent DNA ligase LigA
2173	 62.41	0	2573231..2573371	+	46	58582034	hisC	XOO2411	-	aminotransferase
2174	 64.89	0	2573930..2574661	-	243	58582035	zipA	XOO2412	-	cell division protein ZipA
2175	 65.63	0	2574718..2578374	-	1218	58582036	smc	XOO2413	-	chromosome segregation protein
2176	 64.22	0	2578431..2578880	-	149	58582037	rplI	XOO2414	-	50S ribosomal protein L9
2177	 57.58	-1	2579147..2579377	-	76	58582038	rpsR	XOO2415	-	30S ribosomal protein S18
2178	 61.11	0	2579389..2579820	-	143	58582039	rpsF	XOO2416	-	30S ribosomal protein S6
2179	 64.88	0	2580175..2580621	-	148	58582040	-	XOO2417	-	hypothetical protein
2180	 63.30	0	2580720..2582114	+	464	58582041	asnC	XOO2418	-	asparaginyl-tRNA synthetase
2181	 69.38	+1	2582116..2582373	+	85	58582042	-	XOO2419	-	hypothetical protein
2182	 66.36	0	2582672..2582998	+	108	58582043	-	XOO2420	-	hypothetical protein
2183	 64.36	0	2583336..2583638	+	100	58582045	paiB	XOO2422	-	transcriptional regulator protein Pai2
2184	 60.50	0	2583625..2584386	+	253	58582046	yadF	XOO2423	-	carbonic anhydrase
2185	 59.22	-1	2584442..2585005	+	187	58582047	haaO	XOO2424	-	3-hydroxyanthranilate 3,4-dioxygenase
2186	 69.75	+1	2585018..2585665	+	215	58582048	-	XOO2425	-	hypothetical protein
2187	 67.32	+1	2585915..2587147	+	410	58582050	-	XOO2427	-	hypothetical protein
2188	 68.16	+1	2587206..2588477	+	423	58582051	-	XOO2428	-	kynureninase
2189	 65.72	0	2588649..2590016	+	455	58582052	-	XOO2429	-	kynurenine 3-monooxygenase
2190	 63.90	0	2590320..2591765	+	481	161898991	sbcB	XOO2430	-	exonuclease I
2191	 59.53	-1	2591762..2592448	+	228	58582054	-	XOO2431	-	hypothetical protein
2192	 64.31	0	2592421..2593440	+	339	58582055	-	XOO2432	-	putative oxidoreductase
2193	 62.92	0	2593482..2594042	+	186	58582056	-	XOO2433	-	hypothetical protein
2194	 64.89	0	2594063..2595019	-	318	58582057	-	XOO2434	-	5'-nucleotidase
2195	 58.06	-1	2596193..2596564	+	123	58582059	-	XOO2436	-	putative transposase
2196	 58.49	-1	2596530..2597006	+	158	58582060	-	XOO2437	-	putative transposase
2197	 67.09	0	2597298..2599433	-	711	58582061	-	XOO2438	-	23S rRNA m(2)G2445 methyltransferase
2198	 69.89	+1	2600003..2600281	-	92	58582063	-	XOO2440	-	ABC transporter ATP-binding protein
2199	 67.72	+1	2600287..2601237	-	316	58582064	-	XOO2441	-	ABC transporter ATP-binding protein
2200	 69.82	+1	2601396..2601902	-	168	122879188	-	XOO2442	-	acetyltransferase
2201	 67.80	+1	2601943..2602470	-	175	122879189	-	XOO2443	-	hypothetical protein
2202	 69.28	+1	2602467..2602811	-	114	58582067	-	XOO2444	-	hypothetical protein
2203	 62.67	0	2602983..2603558	+	191	58582068	-	XOO2445	-	hypothetical protein
2204	 65.93	0	2603635..2604588	-	317	58582069	-	XOO2446	-	hypothetical protein
2205	 68.96	+1	2604677..2605549	-	290	58582070	sseA	XOO2447	-	thiosulfate sulfurtransferase
2206	 66.38	0	2605546..2606253	-	235	58582071	-	XOO2448	-	MutT/nudix family protein
2207	 64.74	0	2606492..2606647	-	51	58582073	-	XOO2450	-	peptidyl-prolyl cis-trans isomerase
2208	 62.25	0	2606786..2607193	-	135	58582074	-	XOO2451	-	peptidyl-prolyl cis-trans isomerase
2209	 64.11	0	2607354..2608136	+	260	58582075	crt	XOO2452	-	3-hydroxybutyryl-CoA dehydratase
2210	 70.97	+2	2608145..2608516	+	123	58582076	-	XOO2453	-	hypothetical protein
2211	 62.87	0	2608513..2609223	+	236	58582077	nth	XOO2454	-	endonuclease III
2212	 64.48	0	2610533..2611081	-	182	58582080	cynT	XOO2457	-	carbonic anhydrase
2213	 54.59	-2	2611552..2611998	-	148	58582082	-	XOO2459	-	transposase
2214	 62.83	0	2612805..2614055	+	416	58582083	oprO	XOO2460	-	polyphosphate-selective porin O
2215	 62.11	0	2614146..2615264	+	372	58582084	phoX	XOO2461	-	phosphate binding protein
2216	 65.00	0	2615405..2616541	+	378	58582085	pstS	XOO2462	-	ABC transporter phosphate binding protein
2217	 64.00	0	2616654..2617628	+	324	58582086	pstC	XOO2463	-	ABC transporter phosphate permease
2218	 62.76	0	2617628..2618497	+	289	58582087	pstA	XOO2464	-	ABC transporter phosphate permease
2219	 60.77	0	2618520..2619350	+	276	122879190	pstB	XOO2465	-	phosphate ABC transporter ATP-binding protein
2220	 64.35	0	2619413..2620189	+	258	58582089	phoU	XOO2466	-	phosphate regulon transcriptional regulator
2221	 63.73	0	2620322..2620729	+	135	58582090	-	XOO2467	-	hypothetical protein
2222	 63.36	0	2621013..2621648	+	211	58582091	rnt	XOO2468	-	ribonuclease T
2223	 62.33	0	2621656..2623038	+	460	58582092	-	XOO2469	-	putative ISXo8 transposase
2224	 62.38	0	2623275..2624276	-	333	122879191	-	XOO2470	-	putative transposase
2225	 61.51	0	2624369..2625571	+	400	122879192	tnpX1	XOO2471	-	IS1113 transposase
2226	 58.40	-1	2629824..2630198	+	124	58582102	-	XOO2479	-	site-specific recombinase
2227	 60.47	0	2630279..2631247	-	322	58582104	secF	XOO2481	-	preprotein translocase subunit SecF
2228	 63.63	0	2631342..2633186	-	614	58582105	secD	XOO2482	-	preprotein translocase subunit SecD
2229	 63.56	0	2633383..2633736	-	117	58582106	yajC	XOO2483	-	preprotein translocase subunit YajC
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.