IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2098	 62.97	0	2467348..2468322	+	324	58581954	-	XOO2331	-	hypothetical protein
2099	 63.24	0	2468597..2468917	+	106	121632104	-	XOO4823	-	hypothetical protein
2100	 61.64	0	2469086..2470120	-	344	121632105	-	XOO4824	-	hypothetical protein
2101	 63.65	0	2470617..2471345	-	242	58581956	-	XOO2333	-	ISRSO5-transposase protein
2102	 63.05	0	2471584..2472801	+	405	58581957	-	XOO2334	-	phospholipase
2103	 65.30	0	2473230..2473814	-	194	58581958	gst	XOO2335	-	glutathione S-transferase
2104	 64.36	0	2474001..2475518	-	505	58581959	fumB	XOO2336	-	fumarate hydratase
2105	 64.01	0	2475852..2477732	+	626	58581960	msbA	XOO2337	-	ABC transporter ATP-binding protein
2106	 61.87	0	2477888..2478700	+	270	58581961	fpr	XOO2338	-	ferredoxin-NADP reductase
2107	 59.67	-1	2478851..2479336	-	161	58581962	gpo	XOO2339	-	glutathione peroxidase-like protein
2108	 61.51	0	2480880..2481752	+	290	58581964	dcp	XOO2341	-	peptidyl-dipeptidase
2109	 71.43	+2	2482284..2482997	-	237	121632106	-	XOO4825	-	hypothetical protein
2110	 69.12	+1	2483100..2484200	-	366	58581965	aprE	XOO2342	-	extracellular protease
2111	 63.47	0	2484523..2485023	+	166	58581966	-	XOO2343	-	DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein
2112	 67.47	+1	2485020..2485763	+	247	58581967	-	XOO2344	-	hypothetical protein
2113	 56.89	-1	2485855..2486355	-	166	58581968	-	XOO2345	-	MarR family transcriptional regulator
2114	 61.75	0	2486422..2487255	-	277	58581969	-	XOO2346	-	hypothetical protein
2115	 61.81	0	2487306..2487593	-	95	122879172	-	XOO2347	-	hypothetical protein
2116	 58.73	-1	2487804..2487992	+	62	58581971	-	XOO2348	-	hypothetical protein
2117	 60.28	-1	2488409..2488972	-	187	58581972	-	XOO2349	-	hypothetical protein
2118	 62.34	0	2489014..2489868	-	284	122879173	ygdR	XOO2350	-	oligopeptide transporter
2119	 64.36	0	2490219..2491997	+	592	58581974	-	XOO2351	-	hypothetical protein
2120	 65.11	0	2492069..2494315	+	748	122879174	bglS	XOO2352	-	beta-glucosidase
2121	 63.77	0	2495152..2495289	+	45	121632107	-	XOO4827	-	hypothetical protein
2122	 64.57	0	2495642..2497498	+	618	58581977	-	XOO2354	-	hypothetical protein
2123	 62.96	0	2497743..2499521	-	592	58581978	sglT	XOO2355	-	sodium/glucose cotransport protein
2124	 65.63	0	2499565..2502177	-	870	122879175	celD	XOO2356	-	glucan 1,4-beta-glucosidase
2125	 64.69	0	2502437..2504566	+	709	58581980	phoX	XOO2357	-	alkaline phosphatase
2126	 65.03	0	2504801..2505229	-	142	122879176	-	XOO2358	-	hypothetical protein
2127	 67.25	0	2505428..2505772	-	114	58581982	-	XOO2359	-	hypothetical protein
2128	 66.20	0	2505931..2507445	-	504	58581983	pgi	XOO2360	-	glucose-6-phosphate isomerase
2129	 61.68	0	2507442..2507822	-	126	122879177	panD	XOO2361	-	aspartate alpha-decarboxylase
2130	 66.67	0	2508001..2508843	-	280	58581986	panC	XOO2363	-	pantoate--beta-alanine ligase
2131	 67.52	+1	2508840..2509655	-	271	58581987	panB	XOO2364	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2132	 70.16	+1	2509691..2510176	-	161	58581988	folK	XOO2365	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
2133	 64.77	0	2510180..2511547	-	455	58581989	pcnB	XOO2366	-	polynucleotide adenyltransferase
2134	 64.85	0	2512163..2513206	-	347	58581990	-	XOO2367	-	putative GTP cyclohydrolase
2135	 65.91	0	2513121..2514317	-	398	58581991	amiC	XOO2368	-	N-acetylmuramoyl-L-alanine amidase
2136	 60.54	0	2516276..2516422	+	48	58581994	nagN	XOO2371	-	IS1404 transposase
2137	 63.91	0	2516858..2518234	-	458	122879178	-	XOO2374	-	IS1478 transposase
2138	 66.01	0	2519066..2521801	+	911	58581998	-	XOO2375	-	serine protease
2139	 66.11	0	2522144..2523406	+	420	58581999	czcB	XOO2376	-	cation efflux system protein
2140	 64.70	0	2523399..2527973	+	1524	58582000	czcA	XOO2377	-	cation efflux system protein
2141	 65.74	0	2528038..2529114	+	358	122879179	nodV	XOO2378	-	nodulation protein
2142	 64.05	0	2529111..2529722	+	203	58582002	nodW	XOO2379	-	nodulation protein
2143	 64.78	0	2529999..2538197	-	2732	58582003	yapH	XOO2380	-	YapH protein
2144	 62.24	0	2538239..2539639	+	466	58582004	-	XOO2381	-	putative ISXo8 transposase
2145	 60.99	0	2539852..2540820	-	322	58582005	-	XOO2382	-	putative transposase
2146	 47.93	-2	2541397..2542410	+	337	58582006	-	XOO2383	-	hypothetical protein
2147	 58.14	-1	2542522..2542650	+	42	58582007	-	XOO2384	-	IS1595 transposase
2148	 59.09	-1	2542699..2542962	+	87	121632108	-	XOO4828	-	IS1404 transposase
2149	 62.60	0	2542815..2543651	+	278	58582008	-	XOO2385	-	IS1478 transposase
2150	 66.52	0	2543675..2544997	-	440	58582009	aroA	XOO2386	-	3-phosphoshikimate 1-carboxyvinyltransferase
2151	 61.87	0	2545119..2546327	-	402	58582010	pheA	XOO2387	-	P-protein
2152	 64.64	0	2546376..2547461	-	361	58582011	serC	XOO2388	-	phosphoserine aminotransferase
2153	 63.44	0	2547612..2548604	+	330	58582012	-	XOO2389	-	putative sulfite oxidase subunit YedY
2154	 67.28	0	2549502..2550311	-	269	122879180	-	XOO2391	-	hypothetical protein
2155	 66.30	0	2550552..2550827	+	91	58582015	-	XOO2392	-	hypothetical protein
2156	 67.02	0	2550989..2551552	+	187	58582016	phaF	XOO2393	-	poly(hydroxyalcanoate) granule associated protein
2157	 67.64	+1	2552194..2553120	+	308	58582017	-	XOO2394	-	hypothetical protein
2158	 66.10	0	2553277..2553981	-	234	122879181	hutC	XOO2395	-	histidine utilization repressor
2159	 68.44	+1	2554339..2555694	-	451	122879183	sdeB	XOO2397	-	N-formimino-L-glutamate deiminase
2160	 67.83	+1	2555770..2556975	+	401	122879182	hutI	XOO2396	-	imidazolonepropionase
2161	 66.61	0	2556899..2558530	+	543	58582021	hutH	XOO2398	-	histidine ammonia-lyase
2162	 65.50	0	2558709..2559566	+	285	122879184	hutG	XOO2399	-	formylglutamate amidohydrolase
2163	 66.07	0	2559583..2561250	+	555	122879185	hutU	XOO2400	-	urocanate hydratase
2164	 58.08	-1	2561610..2562704	+	364	58582024	-	XOO2401	-	acyltransferase, putative
2165	 62.07	0	2563152..2563586	+	144	122879186	-	XOO2402	-	hypothetical protein
2166	 64.38	0	2563708..2564232	-	174	58582026	-	XOO2403	-	IS1404 transposase
2167	 58.52	-1	2564226..2564495	-	89	58582027	-	XOO2404	-	IS1404 transposase
2168	 62.29	0	2564622..2567318	-	898	58582029	gyrA	XOO2406	-	DNA gyrase subunit A
2169	 68.17	+1	2567529..2568593	-	354	161898992	mtnA	XOO2407	-	methylthioribose-1-phosphate isomerase
2170	 66.55	0	2568794..2569627	-	277	58582031	-	XOO2408	-	hypothetical protein
2171	 66.67	0	2569590..2570552	-	320	58582032	lysS	XOO2409	-	lysyl-tRNA synthetase
2172	 59.46	-1	2570549..2573074	-	841	122879187	ligA	XOO2410	-	NAD-dependent DNA ligase LigA
2173	 62.41	0	2573231..2573371	+	46	58582034	hisC	XOO2411	-	aminotransferase
2174	 64.89	0	2573930..2574661	-	243	58582035	zipA	XOO2412	-	cell division protein ZipA
2175	 65.63	0	2574718..2578374	-	1218	58582036	smc	XOO2413	-	chromosome segregation protein
2176	 64.22	0	2578431..2578880	-	149	58582037	rplI	XOO2414	-	50S ribosomal protein L9
2177	 57.58	-1	2579147..2579377	-	76	58582038	rpsR	XOO2415	-	30S ribosomal protein S18
2178	 61.11	0	2579389..2579820	-	143	58582039	rpsF	XOO2416	-	30S ribosomal protein S6
2179	 64.88	0	2580175..2580621	-	148	58582040	-	XOO2417	-	hypothetical protein
2180	 63.30	0	2580720..2582114	+	464