IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2055	 62.85	0	2412650..2412937	+	95	58581904	tra8	XOO2281	-	IS163, transposase
2056	 66.67	0	2413019..2413243	+	74	58581905	-	XOO2282	-	transposase
2057	 62.33	0	2413883..2414851	-	322	58581906	-	XOO2283	-	transposase
2058	 61.30	0	2415254..2416222	-	322	58581907	-	XOO2284	-	putative transposase
2059	 62.93	0	2416316..2417332	+	338	58581908	-	XOO2285	-	transposase
2060	 63.33	0	2417310..2421419	-	1369	58581909	-	XOO2286	-	RhsD protein
2061	 57.72	-1	2424994..2425686	+	230	58581913	-	XOO2290	-	hypothetical protein
2062	 60.35	0	2426161..2426793	-	210	58581914	pgsA	XOO2291	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
2063	 64.78	0	2426793..2428649	-	618	58581915	uvrC	XOO2292	-	excinuclease ABC subunit C
2064	 66.67	0	2428646..2430064	-	472	58581916	-	XOO2293	-	hypothetical protein
2065	 67.96	+1	2430088..2430552	-	154	58581917	-	XOO2294	-	low molecular weight phosphotyrosine protein phosphatase
2066	 68.08	+1	2430549..2431328	-	259	58581918	kdsB	XOO2295	-	3-deoxy-manno-octulosonate cytidylyltransferase
2067	 67.34	+1	2431620..2432660	-	346	58581919	lpxK	XOO2296	-	tetraacyldisaccharide 4'-kinase
2068	 63.05	0	2432657..2434426	-	589	58581920	msbA	XOO2297	-	ABC transporter ATP-binding protein
2069	 63.66	0	2434423..2434887	-	154	58581921	exbD	XOO2298	-	biopolymer transport protein
2070	 64.37	0	2434891..2435631	-	246	58581922	exbB	XOO2299	-	biopolymer transport protein
2071	 67.00	0	2435582..2438005	-	807	58581923	comA	XOO2300	-	competence protein
2072	 63.13	0	2438193..2439209	+	338	58581924	-	XOO2301	-	transposase
2073	 58.17	-1	2439222..2439527	+	101	58581925	-	XOO2302	-	hypothetical protein
2074	 63.17	0	2439630..2440430	+	266	58581926	-	XOO2303	-	hypothetical protein
2075	 62.99	0	2440603..2441337	-	244	58581927	ycfV	XOO2304	-	ABC transporter ATP-binding protein
2076	 61.95	0	2441330..2442580	-	416	58581928	lolC	XOO2305	-	lipoprotein releasing system transmembrane protein
2077	 62.96	0	2442998..2443321	-	107	58581929	-	XOO2306	-	hypothetical protein
2078	 61.30	0	2443357..2444139	-	260	58581930	sdhB	XOO2307	-	succinate dehydrogenase iron-sulfur subunit
2079	 62.32	0	2444156..2444293	-	45	121632102	-	XOO4821	-	hypothetical protein
2080	 62.93	0	2444369..2446159	-	596	58581931	sdhA	XOO2308	-	succinate dehydrogenase flavoprotein subunit
2081	 62.27	0	2446194..2446580	-	128	58581932	sdhD	XOO2309	-	succinate dehydrogenase membrane anchor subunit
2082	 61.36	0	2446577..2446972	-	131	58581933	sdhC	XOO2310	-	succinate dehydrogenase membrane anchor subunit
2083	 64.57	0	2448243..2449340	-	365	58581936	ugpC	XOO2313	-	sugar ABC transporter ATP-binding protein
2084	 66.79	0	2449630..2451204	+	524	58581937	zwf	XOO2314	-	glucose-6-phosphate 1-dehydrogenase
2085	 66.87	0	2451201..2452208	+	335	58581938	glk	XOO2315	-	glucokinase
2086	 66.67	0	2452205..2452924	+	239	58581939	pgl	XOO2316	-	6-phosphogluconolactonase
2087	 67.19	0	2453027..2454943	+	638	58581940	edd	XOO2317	-	phosphogluconate dehydratase
2088	 66.67	0	2455462..2455659	+	65	58581942	eda	XOO2319	-	KDPG and KHG aldolase
2089	 63.76	0	2455880..2457256	+	458	122879171	-	XOO2320	-	IS1478 transposase
2090	 64.21	0	2457480..2457926	-	148	58581944	-	XOO2321	-	hypothetical protein
2091	 62.73	0	2458499..2458879	+	126	58581945	-	XOO2322	-	two-component system regulatory protein
2092	 63.54	0	2459037..2462489	+	1150	58581946	-	XOO2323	-	two-component system sensor protein
2093	 61.83	0	2463163..2463720	-	185	58581947	-	XOO2324	-	putative transposase
2094	 64.71	0	2463686..2464195	-	169	58581948	-	XOO2325	-	putative transposase
2095	 54.59	-2	2464253..2464699	+	148	58581949	-	XOO2326	-	transposase
2096	 64.88	0	2465858..2466751	+	297	58581953	-	XOO2330	-	sensor histidine kinase
2097	 61.54	0	2466948..2467181	-	77	121632103	-	XOO4822	-	hypothetical protein
2098	 62.97	0	2467348..2468322	+	324	58581954	-	XOO2331	-	hypothetical protein
2099	 63.24	0	2468597..2468917	+	106	121632104	-	XOO4823	-	hypothetical protein
2100	 61.64	0	2469086..2470120	-	344	121632105	-	XOO4824	-	hypothetical protein
2101	 63.65	0	2470617..2471345	-	242	58581956	-	XOO2333	-	ISRSO5-transposase protein
2102	 63.05	0	2471584..2472801	+	405	58581957	-	XOO2334	-	phospholipase
2103	 65.30	0	2473230..2473814	-	194	58581958	gst	XOO2335	-	glutathione S-transferase
2104	 64.36	0	2474001..2475518	-	505	58581959	fumB	XOO2336	-	fumarate hydratase
2105	 64.01	0	2475852..2477732	+	626	58581960	msbA	XOO2337	-	ABC transporter ATP-binding protein
2106	 61.87	0	2477888..2478700	+	270	58581961	fpr	XOO2338	-	ferredoxin-NADP reductase
2107	 59.67	-1	2478851..2479336	-	161	58581962	gpo	XOO2339	-	glutathione peroxidase-like protein
2108	 61.51	0	2480880..2481752	+	290	58581964	dcp	XOO2341	-	peptidyl-dipeptidase
2109	 71.43	+2	2482284..2482997	-	237	121632106	-	XOO4825	-	hypothetical protein
2110	 69.12	+1	2483100..2484200	-	366	58581965	aprE	XOO2342	-	extracellular protease
2111	 63.47	0	2484523..2485023	+	166	58581966	-	XOO2343	-	DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein
2112	 67.47	+1	2485020..2485763	+	247	58581967	-	XOO2344	-	hypothetical protein
2113	 56.89	-1	2485855..2486355	-	166	58581968	-	XOO2345	-	MarR family transcriptional regulator
2114	 61.75	0	2486422..2487255	-	277	58581969	-	XOO2346	-	hypothetical protein
2115	 61.81	0	2487306..2487593	-	95	122879172	-	XOO2347	-	hypothetical protein
2116	 58.73	-1	2487804..2487992	+	62	58581971	-	XOO2348	-	hypothetical protein
2117	 60.28	-1	2488409..2488972	-	187	58581972	-	XOO2349	-	hypothetical protein
2118	 62.34	0	2489014..2489868	-	284	122879173	ygdR	XOO2350	-	oligopeptide transporter
2119	 64.36	0	2490219..2491997	+	592	58581974	-	XOO2351	-	hypothetical protein
2120	 65.11	0	2492069..2494315	+	748	122879174	bglS	XOO2352	-	beta-glucosidase
2121	 63.77	0	2495152..2495289	+	45	121632107	-	XOO4827	-	hypothetical protein
2122	 64.57	0	2495642..2497498	+	618	58581977	-	XOO2354	-	hypothetical protein
2123	 62.96	0	2497743..2499521	-	592	58581978	sglT	XOO2355	-	sodium/glucose cotransport protein
2124	 65.63	0	2499565..2502177	-	870	122879175	celD	XOO2356	-	glucan 1,4-beta-glucosidase
2125	 64.69	0	2502437..2504566	+	709	58581980	phoX	XOO2357	-	alkaline phosphatase
2126	 65.03	0	2504801..2505229	-	142	122879176	-	XOO2358	-	hypothetical protein
2127	 67.25	0	2505428..2505772	-	114	58581982	-	XOO2359	-	hypothetical protein
2128	 66.20	0	2505931..2507445	-	504	58581983	pgi	XOO2360	-	glucose-6-phosphate isomerase
2129	 61.68	0	2507442..2507822	-	126	122879177	panD	XOO2361	-	aspartate alpha-decarboxylase
2130	 66.67	0	2508001..2508843	-	280	58581986	panC	XOO2363	-	pantoate--beta-alanine ligase
2131	 67.52	+1	2508840..2509655	-	271	58581987	panB	XOO2364	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2132	 70.16	+1	2509691..2510176	-	161	58581988	folK	XOO2365	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
2133	 64.77	0	2510180..2511547	-	455	58581989	pcnB	XOO2366	-	polynucleotide adenyltransferase
2134	 64.85	0	2512163..2513206	-	347	58581990	-	XOO2367	-	putative GTP cyclohydrolase
2135	 65.91	0	2513121..2514317	-	398	58581991	amiC	XOO2368	-	N-acetylmuramoyl-L-alanine amidase
2136	 60.54	0	2516276..2516422	+	48	58581994	nagN	XOO2371	-	IS1404 transposase
2137	 63.91	0	2516858..2518234	-	458