IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2002	 65.64	0	2332753..2334021	+	422	58581843	phaE	XOO2220	-	PHA synthase subunit
2003	 61.28	0	2334018..2335094	+	358	58581844	phbC	XOO2221	-	poly (3-hydroxybutyric acid) synthase
2004	 59.60	-1	2335209..2335406	+	65	58581845	-	XOO2222	-	hypothetical protein
2005	 64.52	0	2335849..2337060	-	403	122879166	-	XOO2223	-	oxidoreductase
2006	 58.70	-1	2337136..2337474	+	112	58581847	-	XOO2224	-	hypothetical protein
2007	 64.63	0	2337577..2339937	+	786	58581848	tex	XOO2225	-	transcription-related protein
2008	 63.17	0	2340149..2341207	+	352	58581849	-	XOO2226	-	putative transposase
2009	 65.96	0	2341259..2341825	-	188	58581850	regR	XOO2227	-	two-component system regulatory protein
2010	 67.36	+1	2341822..2343123	-	433	58581851	regS	XOO2228	-	two-component system sensor protein
2011	 65.17	0	2343169..2344434	+	421	58581852	ispG	XOO2229	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2012	 65.31	0	2344415..2345152	+	245	58581853	-	XOO2230	-	phosphatidylglycerophosphatase B-related protein
2013	 63.66	0	2345293..2346456	-	387	58581854	proP	XOO2231	-	Prop transport protein
2014	 62.44	0	2346607..2347575	+	322	58581855	-	XOO2232	-	hypothetical protein
2015	 58.54	-1	2348049..2348417	-	122	58581856	ygeA	XOO2233	-	putative resistance protein
2016	 64.83	0	2348460..2349221	-	253	58581858	-	XOO2235	-	integral membrane protein
2017	 64.91	0	2349365..2350387	-	340	58581859	murB	XOO2236	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2018	 66.00	0	2350415..2351470	-	351	58581860	pyrD	XOO2237	-	dihydroorotate dehydrogenase 2
2019	 64.99	0	2351476..2352249	-	257	58581861	-	XOO2238	-	hypothetical protein
2020	 63.47	0	2352246..2352620	-	124	58581862	-	XOO2239	-	hypothetical protein
2021	 64.12	0	2353119..2354651	-	510	122879167	-	XOO2240	-	aldehyde dehydrogenase
2022	 65.29	0	2354985..2355275	+	96	58581864	tspO	XOO2241	-	tryptophan-rich sensory protein
2023	 65.56	0	2355922..2358462	+	846	58581865	metL	XOO2242	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2024	 68.63	+1	2358459..2359427	+	322	58581866	thrB	XOO2243	-	homoserine kinase
2025	 63.11	0	2360431..2361639	+	402	58581868	-	XOO2245	-	tannase precursor
2026	 65.28	0	2362363..2362722	-	119	58581869	-	XOO2246	-	hypothetical protein
2027	 68.58	+1	2362839..2364143	+	434	58581870	thrC	XOO2247	-	threonine synthase
2028	 67.03	0	2364168..2364989	+	273	58581871	-	XOO2248	-	hypothetical protein
2029	 65.33	0	2366098..2367666	+	522	58581874	hisS	XOO2251	-	histidyl-tRNA synthetase
2030	 58.92	-1	2368183..2368647	-	154	58581875	-	XOO2252	-	putative transposase
2031	 58.33	-1	2368613..2368984	-	123	58581876	-	XOO2253	-	putative transposase
2032	 70.64	+1	2369283..2369609	+	108	122879168	-	XOO2254	-	hypothetical protein
2033	 67.10	0	2369619..2370533	+	304	58581878	hisG	XOO2255	-	ATP phosphoribosyltransferase
2034	 66.36	0	2370530..2371825	+	431	58581879	hisD	XOO2256	-	histidinol dehydrogenase
2035	 65.81	0	2371744..2372913	+	389	58581880	hisC	XOO2257	-	histidinol-phosphate aminotransferase
2036	 63.03	0	2372910..2374037	+	375	58581881	hisB	XOO2258	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2037	 64.18	0	2374034..2374636	+	200	58581882	hisH	XOO2259	-	imidazole glycerol phosphate synthase subunit HisH
2038	 66.26	0	2374633..2375367	+	244	58581883	hisA	XOO2260	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2039	 62.93	0	2375361..2376137	+	258	161898993	hisF	XOO2261	-	imidazole glycerol phosphate synthase subunit HisF
2040	 64.09	0	2376127..2376747	+	206	58581885	hisI	XOO2262	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2041	 63.48	0	2376838..2377245	+	135	58581886	-	XOO2263	-	hypothetical protein
2042	 65.84	0	2377335..2380850	-	1171	58581887	-	XOO2264	-	hypothetical protein
2043	 59.36	-1	2381302..2382081	-	259	58581888	-	XOO2265	-	pectate lyase L precursor
2044	 59.68	-1	2383499..2384572	+	357	58581889	-	XOO2266	-	putative phage replication protein RstA
2045	 54.42	-2	2385734..2387170	+	478	122879169	-	XOO2267	-	hypothetical protein
2046	 56.79	-2	2387489..2388673	+	394	58581891	-	XOO2268	-	hypothetical protein
2047	 54.59	-2	2394478..2394924	+	148	58581894	-	XOO2271	-	transposase
2048	 57.40	-1	2394690..2395250	+	186	122879170	-	XOO2272	-	transposase
2049	 56.13	-2	2395719..2396126	-	135	58581896	-	XOO2273	-	transposase
2050	 66.89	0	2396490..2400998	+	1502	58581898	pthA4	XOO2275	-	avirulence protein
2051	 66.64	0	2401778..2405743	+	1321	58581899	-	XOO2276	-	hypothetical protein
2052	 54.59	-2	2405806..2406252	+	148	58581900	-	XOO2277	-	transposase
2053	 65.40	0	2407066..2411565	+	1499	58581902	-	XOO2279	-	avirulence protein
2054	 66.52	0	2411957..2412628	+	223	58581903	-	XOO2280	-	transposase
2055	 62.85	0	2412650..2412937	+	95	58581904	tra8	XOO2281	-	IS163, transposase
2056	 66.67	0	2413019..2413243	+	74	58581905	-	XOO2282	-	transposase
2057	 62.33	0	2413883..2414851	-	322	58581906	-	XOO2283	-	transposase
2058	 61.30	0	2415254..2416222	-	322	58581907	-	XOO2284	-	putative transposase
2059	 62.93	0	2416316..2417332	+	338	58581908	-	XOO2285	-	transposase
2060	 63.33	0	2417310..2421419	-	1369	58581909	-	XOO2286	-	RhsD protein
2061	 57.72	-1	2424994..2425686	+	230	58581913	-	XOO2290	-	hypothetical protein
2062	 60.35	0	2426161..2426793	-	210	58581914	pgsA	XOO2291	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
2063	 64.78	0	2426793..2428649	-	618	58581915	uvrC	XOO2292	-	excinuclease ABC subunit C
2064	 66.67	0	2428646..2430064	-	472	58581916	-	XOO2293	-	hypothetical protein
2065	 67.96	+1	2430088..2430552	-	154	58581917	-	XOO2294	-	low molecular weight phosphotyrosine protein phosphatase
2066	 68.08	+1	2430549..2431328	-	259	58581918	kdsB	XOO2295	-	3-deoxy-manno-octulosonate cytidylyltransferase
2067	 67.34	+1	2431620..2432660	-	346	58581919	lpxK	XOO2296	-	tetraacyldisaccharide 4'-kinase
2068	 63.05	0	2432657..2434426	-	589	58581920	msbA	XOO2297	-	ABC transporter ATP-binding protein
2069	 63.66	0	2434423..2434887	-	154	58581921	exbD	XOO2298	-	biopolymer transport protein
2070	 64.37	0	2434891..2435631	-	246	58581922	exbB	XOO2299	-	biopolymer transport protein
2071	 67.00	0	2435582..2438005	-	807	58581923	comA	XOO2300	-	competence protein
2072	 63.13	0	2438193..2439209	+	338	58581924	-	XOO2301	-	transposase
2073	 58.17	-1	2439222..2439527	+	101	58581925	-	XOO2302	-	hypothetical protein
2074	 63.17	0	2439630..2440430	+	266	58581926	-	XOO2303	-	hypothetical protein
2075	 62.99	0	2440603..2441337	-	244	58581927	ycfV	XOO2304	-	ABC transporter ATP-binding protein
2076	 61.95	0	2441330..2442580	-	416	58581928	lolC	XOO2305	-	lipoprotein releasing system transmembrane protein
2077	 62.96	0	2442998..2443321	-	107	58581929	-	XOO2306	-	hypothetical protein
2078	 61.30	0	2443357..2444139	-	260	58581930	sdhB	XOO2307	-	succinate dehydrogenase iron-sulfur subunit
2079	 62.32	0	2444156..2444293	-	45	121632102	-	XOO4821	-	hypothetical protein
2080	 62.93	0	2444369..2446159	-	596	58581931	sdhA	XOO2308	-	succinate dehydrogenase flavoprotein subunit
2081	 62.27	0	2446194..2446580	-	128	58581932	sdhD	XOO2309	-	succinate dehydrogenase membrane anchor subunit
2082	 61.36	0	2446577..2446972	-	131	58581933	sdhC	XOO2310	-	succinate dehydrogenase membrane anchor subunit
2083	 64.57	0	2448243..2449340	-	365