IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 60.51	0	2320590..2321174	+	194	58581832	orn	XOO2209	-	oligoribonuclease
1992	 60.79	0	2321386..2322372	-	328	58581833	yggB	XOO2210	-	small conductance mechanosensitive ion channel
1993	 62.74	0	2322372..2324765	-	797	122879164	ppsA	XOO2211	-	phosphoenolpyruvate synthase
1994	 59.09	-1	2324832..2325728	+	298	58581835	-	XOO2212	-	hypothetical protein
1995	 64.51	0	2325934..2326443	+	169	58581836	-	XOO2213	-	hypothetical protein
1996	 62.65	0	2326519..2327016	+	165	58581837	mutT	XOO2214	-	7,8-dihydro-8-oxoguanine-triphosphatase
1997	 61.30	0	2327977..2328945	+	322	58581838	-	XOO2215	-	putative transposase
1998	 62.26	0	2329310..2330692	+	460	122879165	-	XOO2216	-	putative ISXo8 transposase
1999	 53.94	-2	2330759..2330923	-	54	58581840	-	XOO2217	-	putative transposase
2000	 64.16	0	2331234..2331992	-	252	58581841	hbdH1	XOO2218	-	D-beta-hydroxybutyrate dehydrogenase
2001	 64.92	0	2331996..2332739	+	247	58581842	pssA	XOO2219	-	CDP-diacylglycerol-serine o-phosphatidyltransferase
2002	 65.64	0	2332753..2334021	+	422	58581843	phaE	XOO2220	-	PHA synthase subunit
2003	 61.28	0	2334018..2335094	+	358	58581844	phbC	XOO2221	-	poly (3-hydroxybutyric acid) synthase
2004	 59.60	-1	2335209..2335406	+	65	58581845	-	XOO2222	-	hypothetical protein
2005	 64.52	0	2335849..2337060	-	403	122879166	-	XOO2223	-	oxidoreductase
2006	 58.70	-1	2337136..2337474	+	112	58581847	-	XOO2224	-	hypothetical protein
2007	 64.63	0	2337577..2339937	+	786	58581848	tex	XOO2225	-	transcription-related protein
2008	 63.17	0	2340149..2341207	+	352	58581849	-	XOO2226	-	putative transposase
2009	 65.96	0	2341259..2341825	-	188	58581850	regR	XOO2227	-	two-component system regulatory protein
2010	 67.36	+1	2341822..2343123	-	433	58581851	regS	XOO2228	-	two-component system sensor protein
2011	 65.17	0	2343169..2344434	+	421	58581852	ispG	XOO2229	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2012	 65.31	0	2344415..2345152	+	245	58581853	-	XOO2230	-	phosphatidylglycerophosphatase B-related protein
2013	 63.66	0	2345293..2346456	-	387	58581854	proP	XOO2231	-	Prop transport protein
2014	 62.44	0	2346607..2347575	+	322	58581855	-	XOO2232	-	hypothetical protein
2015	 58.54	-1	2348049..2348417	-	122	58581856	ygeA	XOO2233	-	putative resistance protein
2016	 64.83	0	2348460..2349221	-	253	58581858	-	XOO2235	-	integral membrane protein
2017	 64.91	0	2349365..2350387	-	340	58581859	murB	XOO2236	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2018	 66.00	0	2350415..2351470	-	351	58581860	pyrD	XOO2237	-	dihydroorotate dehydrogenase 2
2019	 64.99	0	2351476..2352249	-	257	58581861	-	XOO2238	-	hypothetical protein
2020	 63.47	0	2352246..2352620	-	124	58581862	-	XOO2239	-	hypothetical protein
2021	 64.12	0	2353119..2354651	-	510	122879167	-	XOO2240	-	aldehyde dehydrogenase
2022	 65.29	0	2354985..2355275	+	96	58581864	tspO	XOO2241	-	tryptophan-rich sensory protein
2023	 65.56	0	2355922..2358462	+	846	58581865	metL	XOO2242	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2024	 68.63	+1	2358459..2359427	+	322	58581866	thrB	XOO2243	-	homoserine kinase
2025	 63.11	0	2360431..2361639	+	402	58581868	-	XOO2245	-	tannase precursor
2026	 65.28	0	2362363..2362722	-	119	58581869	-	XOO2246	-	hypothetical protein
2027	 68.58	+1	2362839..2364143	+	434	58581870	thrC	XOO2247	-	threonine synthase
2028	 67.03	0	2364168..2364989	+	273	58581871	-	XOO2248	-	hypothetical protein
2029	 65.33	0	2366098..2367666	+	522	58581874	hisS	XOO2251	-	histidyl-tRNA synthetase
2030	 58.92	-1	2368183..2368647	-	154	58581875	-	XOO2252	-	putative transposase
2031	 58.33	-1	2368613..2368984	-	123	58581876	-	XOO2253	-	putative transposase
2032	 70.64	+1	2369283..2369609	+	108	122879168	-	XOO2254	-	hypothetical protein
2033	 67.10	0	2369619..2370533	+	304	58581878	hisG	XOO2255	-	ATP phosphoribosyltransferase
2034	 66.36	0	2370530..2371825	+	431	58581879	hisD	XOO2256	-	histidinol dehydrogenase
2035	 65.81	0	2371744..2372913	+	389	58581880	hisC	XOO2257	-	histidinol-phosphate aminotransferase
2036	 63.03	0	2372910..2374037	+	375	58581881	hisB	XOO2258	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2037	 64.18	0	2374034..2374636	+	200	58581882	hisH	XOO2259	-	imidazole glycerol phosphate synthase subunit HisH
2038	 66.26	0	2374633..2375367	+	244	58581883	hisA	XOO2260	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2039	 62.93	0	2375361..2376137	+	258	161898993	hisF	XOO2261	-	imidazole glycerol phosphate synthase subunit HisF
2040	 64.09	0	2376127..2376747	+	206	58581885	hisI	XOO2262	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2041	 63.48	0	2376838..2377245	+	135	58581886	-	XOO2263	-	hypothetical protein
2042	 65.84	0	2377335..2380850	-	1171	58581887	-	XOO2264	-	hypothetical protein
2043	 59.36	-1	2381302..2382081	-	259	58581888	-	XOO2265	-	pectate lyase L precursor
2044	 59.68	-1	2383499..2384572	+	357	58581889	-	XOO2266	-	putative phage replication protein RstA
2045	 54.42	-2	2385734..2387170	+	478	122879169	-	XOO2267	-	hypothetical protein
2046	 56.79	-2	2387489..2388673	+	394	58581891	-	XOO2268	-	hypothetical protein
2047	 54.59	-2	2394478..2394924	+	148	58581894	-	XOO2271	-	transposase
2048	 57.40	-1	2394690..2395250	+	186	122879170	-	XOO2272	-	transposase
2049	 56.13	-2	2395719..2396126	-	135	58581896	-	XOO2273	-	transposase
2050	 66.89	0	2396490..2400998	+	1502	58581898	pthA4	XOO2275	-	avirulence protein
2051	 66.64	0	2401778..2405743	+	1321	58581899	-	XOO2276	-	hypothetical protein
2052	 54.59	-2	2405806..2406252	+	148	58581900	-	XOO2277	-	transposase
2053	 65.40	0	2407066..2411565	+	1499	58581902	-	XOO2279	-	avirulence protein
2054	 66.52	0	2411957..2412628	+	223	58581903	-	XOO2280	-	transposase
2055	 62.85	0	2412650..2412937	+	95	58581904	tra8	XOO2281	-	IS163, transposase
2056	 66.67	0	2413019..2413243	+	74	58581905	-	XOO2282	-	transposase
2057	 62.33	0	2413883..2414851	-	322	58581906	-	XOO2283	-	transposase
2058	 61.30	0	2415254..2416222	-	322	58581907	-	XOO2284	-	putative transposase
2059	 62.93	0	2416316..2417332	+	338	58581908	-	XOO2285	-	transposase
2060	 63.33	0	2417310..2421419	-	1369	58581909	-	XOO2286	-	RhsD protein
2061	 57.72	-1	2424994..2425686	+	230	58581913	-	XOO2290	-	hypothetical protein
2062	 60.35	0	2426161..2426793	-	210	58581914	pgsA	XOO2291	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
2063	 64.78	0	2426793..2428649	-	618	58581915	uvrC	XOO2292	-	excinuclease ABC subunit C
2064	 66.67	0	2428646..2430064	-	472	58581916	-	XOO2293	-	hypothetical protein
2065	 67.96	+1	2430088..2430552	-	154	58581917	-	XOO2294	-	low molecular weight phosphotyrosine protein phosphatase
2066	 68.08	+1	2430549..2431328	-	259	58581918	kdsB	XOO2295	-	3-deoxy-manno-octulosonate cytidylyltransferase
2067	 67.34	+1	2431620..2432660	-	346	58581919	lpxK	XOO2296	-	tetraacyldisaccharide 4'-kinase
2068	 63.05	0	2432657..2434426	-	589	58581920	msbA	XOO2297	-	ABC transporter ATP-binding protein
2069	 63.66	0	2434423..2434887	-	154	58581921	exbD	XOO2298	-	biopolymer transport protein
2070	 64.37	0	2434891..2435631	-	246	58581922	exbB	XOO2299	-	biopolymer transport protein
2071	 67.00	0	2435582..2438005	-	807	58581923	comA	XOO2300	-	competence protein
2072	 63.13	0	2438193..2439209	+	338	58581924	-	XOO2301	-	transposase
2073	 58.17	-1	2439222..2439527	+	101	58581925	-	XOO2302	-	hypothetical protein
2074	 63.17	0	2439630..2440430	+	266	58581926	-	XOO2303	-	hypothetical protein
2075	 62.99	0	2440603..2441337	-	244	58581927	ycfV	XOO2304	-	ABC transporter ATP-binding protein
2076	 61.95	0	2441330..2442580	-	416	58581928	lolC	XOO2305	-	lipoprotein releasing system transmembrane protein
2077	 62.96	0	2442998..2443321	-	107	58581929	-	XOO2306	-	hypothetical protein
2078	 61.30	0	2443357..2444139	-	260	58581930	sdhB	XOO2307	-	succinate dehydrogenase iron-sulfur subunit
2079	 62.32	0	2444156..2444293	-	45	121632102	-	XOO4821	-	hypothetical protein
2080	 62.93	0	2444369..2446159	-	596	58581931	sdhA	XOO2308	-	succinate dehydrogenase flavoprotein subunit
2081	 62.27	0	2446194..2446580	-	128	58581932	sdhD	XOO2309	-	succinate dehydrogenase membrane anchor subunit
2082	 61.36	0	2446577..2446972	-	131	58581933	sdhC	XOO2310	-	succinate dehydrogenase membrane anchor subunit
2083	 64.57	0	2448243..2449340	-	365	58581936	ugpC	XOO2313	-	sugar ABC transporter ATP-binding protein
2084	 66.79	0	2449630..2451204	+	524	58581937	zwf	XOO2314	-	glucose-6-phosphate 1-dehydrogenase
2085	 66.87	0	2451201..2452208	+	335	58581938	glk	XOO2315	-	glucokinase
2086	 66.67	0	2452205..2452924	+	239	58581939	pgl	XOO2316	-	6-phosphogluconolactonase
2087	 67.19	0	2453027..2454943	+	638	58581940	edd	XOO2317	-	phosphogluconate dehydratase
2088	 66.67	0	2455462..2455659	+	65	58581942	eda	XOO2319	-	KDPG and KHG aldolase
2089	 63.76	0	2455880..2457256	+	458	122879171	-	XOO2320	-	IS1478 transposase
2090	 64.21	0	2457480..2457926	-	148	58581944	-	XOO2321	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.