IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1960	 64.96	0	2284841..2286073	-	410	58581797	traB	XOO2174	-	pheromone shutdown protein
1961	 62.41	0	2286054..2286593	-	179	58581798	pat	XOO2175	-	phosphinothricin N-acetyltransferase
1962	 65.37	0	2286598..2287524	-	308	58581799	-	XOO2176	-	beta-alanine synthetase
1963	 66.19	0	2287752..2288795	-	347	58581800	-	XOO2177	-	hypothetical protein
1964	 61.70	0	2289023..2289364	-	113	58581801	-	XOO2178	-	hypothetical protein
1965	 65.50	0	2289929..2290612	+	227	58581802	cmk	XOO2179	-	cytidylate kinase
1966	 61.03	0	2290796..2292481	+	561	58581803	rpsA	XOO2180	-	30S ribosomal protein S1
1967	 56.94	-1	2292522..2292881	+	119	58581804	ihfB	XOO2181	-	integration host factor subunit beta
1968	 59.80	-1	2292949..2293254	+	101	58581805	-	XOO2182	-	hypothetical protein
1969	 62.60	0	2293261..2294439	+	392	58581806	-	XOO2183	-	hypothetical protein
1970	 62.75	0	2294337..2295407	+	356	58581807	rfb303	XOO2184	-	lipopolysaccharide core biosynthesis protein
1971	 62.47	0	2295421..2297328	+	635	58581808	-	XOO2185	-	epimerase; dehydratase protein
1972	 60.40	0	2297328..2298221	+	297	58581809	galU	XOO2186	-	UTP-glucose-1-phosphate uridylyltransferase
1973	 67.38	+1	2299343..2299624	-	93	121632101	-	XOO4808	-	hypothetical protein
1974	 63.67	0	2300986..2301852	-	288	58581814	-	XOO2191	-	IS1478 transposase
1975	 58.57	-1	2302061..2302381	-	106	58581815	-	XOO2192	-	hypothetical protein
1976	 67.32	+1	2302431..2303342	+	303	58581816	folD	XOO2193	-	bifunctional methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase
1977	 63.51	0	2303531..2304988	+	485	58581817	guaB	XOO2194	-	inositol-5-monophosphate dehydrogenase
1978	 63.38	0	2305067..2306680	+	537	58581818	guaA	XOO2195	-	bifunctional GMP synthase/glutamine amidotransferase protein
1979	 68.24	+1	2306825..2309236	-	803	122879163	-	XOO2196	-	hypothetical protein
1980	 68.70	+1	2309286..2310857	-	523	58581820	-	XOO2197	-	NADH dehydrogenase
1981	 63.71	0	2310910..2311857	+	315	58581821	-	XOO2198	-	LysR family transcriptional regulator
1982	 63.76	0	2312409..2312855	+	148	58581822	-	XOO2199	-	hypothetical protein
1983	 63.42	0	2312883..2314022	-	379	58581823	-	XOO2200	-	hypothetical protein
1984	 67.63	+1	2314108..2314314	+	68	58581824	ybhD	XOO2201	-	transcriptional regulator
1985	 65.11	0	2314324..2315031	+	235	58581825	-	XOO2202	-	hypothetical protein
1986	 61.39	0	2315227..2315832	-	201	58581826	-	XOO2203	-	hypothetical protein
1987	 60.06	-1	2315875..2317767	-	630	58581827	tlpC	XOO2204	-	methyl-accepting chemotaxis protein
1988	 62.83	0	2318063..2319469	-	468	58581828	smf2	XOO2205	-	manganese transport protein MntH
1989	 67.09	0	2319541..2320008	+	155	161898994	-	XOO2206	-	manganese transport regulator MntR
1990	 68.23	+1	2320005..2320517	+	170	58581831	-	XOO2208	-	hypothetical protein
1991	 60.51	0	2320590..2321174	+	194	58581832	orn	XOO2209	-	oligoribonuclease
1992	 60.79	0	2321386..2322372	-	328	58581833	yggB	XOO2210	-	small conductance mechanosensitive ion channel
1993	 62.74	0	2322372..2324765	-	797	122879164	ppsA	XOO2211	-	phosphoenolpyruvate synthase
1994	 59.09	-1	2324832..2325728	+	298	58581835	-	XOO2212	-	hypothetical protein
1995	 64.51	0	2325934..2326443	+	169	58581836	-	XOO2213	-	hypothetical protein
1996	 62.65	0	2326519..2327016	+	165	58581837	mutT	XOO2214	-	7,8-dihydro-8-oxoguanine-triphosphatase
1997	 61.30	0	2327977..2328945	+	322	58581838	-	XOO2215	-	putative transposase
1998	 62.26	0	2329310..2330692	+	460	122879165	-	XOO2216	-	putative ISXo8 transposase
1999	 53.94	-2	2330759..2330923	-	54	58581840	-	XOO2217	-	putative transposase
2000	 64.16	0	2331234..2331992	-	252	58581841	hbdH1	XOO2218	-	D-beta-hydroxybutyrate dehydrogenase
2001	 64.92	0	2331996..2332739	+	247	58581842	pssA	XOO2219	-	CDP-diacylglycerol-serine o-phosphatidyltransferase
2002	 65.64	0	2332753..2334021	+	422	58581843	phaE	XOO2220	-	PHA synthase subunit
2003	 61.28	0	2334018..2335094	+	358	58581844	phbC	XOO2221	-	poly (3-hydroxybutyric acid) synthase
2004	 59.60	-1	2335209..2335406	+	65	58581845	-	XOO2222	-	hypothetical protein
2005	 64.52	0	2335849..2337060	-	403	122879166	-	XOO2223	-	oxidoreductase
2006	 58.70	-1	2337136..2337474	+	112	58581847	-	XOO2224	-	hypothetical protein
2007	 64.63	0	2337577..2339937	+	786	58581848	tex	XOO2225	-	transcription-related protein
2008	 63.17	0	2340149..2341207	+	352	58581849	-	XOO2226	-	putative transposase
2009	 65.96	0	2341259..2341825	-	188	58581850	regR	XOO2227	-	two-component system regulatory protein
2010	 67.36	+1	2341822..2343123	-	433	58581851	regS	XOO2228	-	two-component system sensor protein
2011	 65.17	0	2343169..2344434	+	421	58581852	ispG	XOO2229	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2012	 65.31	0	2344415..2345152	+	245	58581853	-	XOO2230	-	phosphatidylglycerophosphatase B-related protein
2013	 63.66	0	2345293..2346456	-	387	58581854	proP	XOO2231	-	Prop transport protein
2014	 62.44	0	2346607..2347575	+	322	58581855	-	XOO2232	-	hypothetical protein
2015	 58.54	-1	2348049..2348417	-	122	58581856	ygeA	XOO2233	-	putative resistance protein
2016	 64.83	0	2348460..2349221	-	253	58581858	-	XOO2235	-	integral membrane protein
2017	 64.91	0	2349365..2350387	-	340	58581859	murB	XOO2236	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2018	 66.00	0	2350415..2351470	-	351	58581860	pyrD	XOO2237	-	dihydroorotate dehydrogenase 2
2019	 64.99	0	2351476..2352249	-	257	58581861	-	XOO2238	-	hypothetical protein
2020	 63.47	0	2352246..2352620	-	124	58581862	-	XOO2239	-	hypothetical protein
2021	 64.12	0	2353119..2354651	-	510	122879167	-	XOO2240	-	aldehyde dehydrogenase
2022	 65.29	0	2354985..2355275	+	96	58581864	tspO	XOO2241	-	tryptophan-rich sensory protein
2023	 65.56	0	2355922..2358462	+	846	58581865	metL	XOO2242	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2024	 68.63	+1	2358459..2359427	+	322	58581866	thrB	XOO2243	-	homoserine kinase
2025	 63.11	0	2360431..2361639	+	402	58581868	-	XOO2245	-	tannase precursor
2026	 65.28	0	2362363..2362722	-	119	58581869	-	XOO2246	-	hypothetical protein
2027	 68.58	+1	2362839..2364143	+	434	58581870	thrC	XOO2247	-	threonine synthase
2028	 67.03	0	2364168..2364989	+	273	58581871	-	XOO2248	-	hypothetical protein
2029	 65.33	0	2366098..2367666	+	522	58581874	hisS	XOO2251	-	histidyl-tRNA synthetase
2030	 58.92	-1	2368183..2368647	-	154	58581875	-	XOO2252	-	putative transposase
2031	 58.33	-1	2368613..2368984	-	123	58581876	-	XOO2253	-	putative transposase
2032	 70.64	+1	2369283..2369609	+	108	122879168	-	XOO2254	-	hypothetical protein
2033	 67.10	0	2369619..2370533	+	304	58581878	hisG	XOO2255	-	ATP phosphoribosyltransferase
2034	 66.36	0	2370530..2371825	+	431	58581879	hisD	XOO2256	-	histidinol dehydrogenase
2035	 65.81	0	2371744..2372913	+	389	58581880	hisC	XOO2257	-	histidinol-phosphate aminotransferase
2036	 63.03	0	2372910..2374037	+	375	58581881	hisB	XOO2258	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2037	 64.18	0	2374034..2374636	+	200	58581882	hisH	XOO2259	-	imidazole glycerol phosphate synthase subunit HisH
2038	 66.26	0	2374633..2375367	+	244	58581883	hisA	XOO2260	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2039	 62.93	0	2375361..2376137	+	258	161898993	hisF	XOO2261	-	imidazole glycerol phosphate synthase subunit HisF
2040	 64.09	0	2376127..2376747	+	206	58581885	hisI	XOO2262	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2041	 63.48	0	2376838..2377245	+	135	58581886	-	XOO2263	-	hypothetical protein
2042	 65.84	0	2377335..2380850	-	1171	58581887	-	XOO2264	-	hypothetical protein
2043	 59.36	-1	2381302..2382081	-	259	58581888	-	XOO2265	-	pectate lyase L precursor
2044	 59.68	-1	2383499..2384572	+	357	58581889	-	XOO2266	-	putative phage replication protein RstA
2045	 54.42	-2	2385734..2387170	+	478	122879169	-	XOO2267	-	hypothetical protein
2046	 56.79	-2	2387489..2388673	+	394	58581891	-	XOO2268	-	hypothetical protein
2047	 54.59	-2	2394478..2394924	+	148	58581894	-	XOO2271	-	transposase
2048	 57.40	-1	2394690..2395250	+	186	122879170	-	XOO2272	-	transposase
2049	 56.13	-2	2395719..2396126	-	135	58581896	-	XOO2273	-	transposase
2050	 66.89	0	2396490..2400998	+	1502	58581898	pthA4	XOO2275	-	avirulence protein
2051	 66.64	0	2401778..2405743	+	1321	58581899	-	XOO2276	-	hypothetical protein
2052	 54.59	-2	2405806..2406252	+	148	58581900	-	XOO2277	-	transposase
2053	 65.40	0	2407066..2411565	+	1499	58581902	-	XOO2279	-	avirulence protein
2054	 66.52	0	2411957..2412628	+	223	58581903	-	XOO2280	-	transposase
2055	 62.85	0	2412650..2412937	+	95	58581904	tra8	XOO2281	-	IS163, transposase
2056	 66.67	0	2413019..2413243	+	74	58581905	-	XOO2282	-	transposase
2057	 62.33	0	2413883..2414851	-	322	58581906	-	XOO2283	-	transposase
2058	 61.30	0	2415254..2416222	-	322	58581907	-	XOO2284	-	putative transposase
2059	 62.93	0	2416316..2417332	+	338	58581908	-	XOO2285	-	transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.