IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1955	 62.35	0	2276509..2278128	+	539	58581792	-	XOO2169	-	hypothetical protein
1956	 64.19	0	2278132..2279502	+	456	58581793	malE	XOO2170	-	ABC transporter sugar binding protein
1957	 62.26	0	2279499..2280383	+	294	58581794	lacF	XOO2171	-	ABC transporter sugar permease
1958	 61.17	0	2280380..2281216	+	278	58581795	lacG	XOO2172	-	ABC transporter sugar permease
1959	 64.93	0	2281213..2284377	+	1054	58581796	-	XOO2173	-	hypothetical protein
1960	 64.96	0	2284841..2286073	-	410	58581797	traB	XOO2174	-	pheromone shutdown protein
1961	 62.41	0	2286054..2286593	-	179	58581798	pat	XOO2175	-	phosphinothricin N-acetyltransferase
1962	 65.37	0	2286598..2287524	-	308	58581799	-	XOO2176	-	beta-alanine synthetase
1963	 66.19	0	2287752..2288795	-	347	58581800	-	XOO2177	-	hypothetical protein
1964	 61.70	0	2289023..2289364	-	113	58581801	-	XOO2178	-	hypothetical protein
1965	 65.50	0	2289929..2290612	+	227	58581802	cmk	XOO2179	-	cytidylate kinase
1966	 61.03	0	2290796..2292481	+	561	58581803	rpsA	XOO2180	-	30S ribosomal protein S1
1967	 56.94	-1	2292522..2292881	+	119	58581804	ihfB	XOO2181	-	integration host factor subunit beta
1968	 59.80	-1	2292949..2293254	+	101	58581805	-	XOO2182	-	hypothetical protein
1969	 62.60	0	2293261..2294439	+	392	58581806	-	XOO2183	-	hypothetical protein
1970	 62.75	0	2294337..2295407	+	356	58581807	rfb303	XOO2184	-	lipopolysaccharide core biosynthesis protein
1971	 62.47	0	2295421..2297328	+	635	58581808	-	XOO2185	-	epimerase; dehydratase protein
1972	 60.40	0	2297328..2298221	+	297	58581809	galU	XOO2186	-	UTP-glucose-1-phosphate uridylyltransferase
1973	 67.38	+1	2299343..2299624	-	93	121632101	-	XOO4808	-	hypothetical protein
1974	 63.67	0	2300986..2301852	-	288	58581814	-	XOO2191	-	IS1478 transposase
1975	 58.57	-1	2302061..2302381	-	106	58581815	-	XOO2192	-	hypothetical protein
1976	 67.32	+1	2302431..2303342	+	303	58581816	folD	XOO2193	-	bifunctional methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase
1977	 63.51	0	2303531..2304988	+	485	58581817	guaB	XOO2194	-	inositol-5-monophosphate dehydrogenase
1978	 63.38	0	2305067..2306680	+	537	58581818	guaA	XOO2195	-	bifunctional GMP synthase/glutamine amidotransferase protein
1979	 68.24	+1	2306825..2309236	-	803	122879163	-	XOO2196	-	hypothetical protein
1980	 68.70	+1	2309286..2310857	-	523	58581820	-	XOO2197	-	NADH dehydrogenase
1981	 63.71	0	2310910..2311857	+	315	58581821	-	XOO2198	-	LysR family transcriptional regulator
1982	 63.76	0	2312409..2312855	+	148	58581822	-	XOO2199	-	hypothetical protein
1983	 63.42	0	2312883..2314022	-	379	58581823	-	XOO2200	-	hypothetical protein
1984	 67.63	+1	2314108..2314314	+	68	58581824	ybhD	XOO2201	-	transcriptional regulator
1985	 65.11	0	2314324..2315031	+	235	58581825	-	XOO2202	-	hypothetical protein
1986	 61.39	0	2315227..2315832	-	201	58581826	-	XOO2203	-	hypothetical protein
1987	 60.06	-1	2315875..2317767	-	630	58581827	tlpC	XOO2204	-	methyl-accepting chemotaxis protein
1988	 62.83	0	2318063..2319469	-	468	58581828	smf2	XOO2205	-	manganese transport protein MntH
1989	 67.09	0	2319541..2320008	+	155	161898994	-	XOO2206	-	manganese transport regulator MntR
1990	 68.23	+1	2320005..2320517	+	170	58581831	-	XOO2208	-	hypothetical protein
1991	 60.51	0	2320590..2321174	+	194	58581832	orn	XOO2209	-	oligoribonuclease
1992	 60.79	0	2321386..2322372	-	328	58581833	yggB	XOO2210	-	small conductance mechanosensitive ion channel
1993	 62.74	0	2322372..2324765	-	797	122879164	ppsA	XOO2211	-	phosphoenolpyruvate synthase
1994	 59.09	-1	2324832..2325728	+	298	58581835	-	XOO2212	-	hypothetical protein
1995	 64.51	0	2325934..2326443	+	169	58581836	-	XOO2213	-	hypothetical protein
1996	 62.65	0	2326519..2327016	+	165	58581837	mutT	XOO2214	-	7,8-dihydro-8-oxoguanine-triphosphatase
1997	 61.30	0	2327977..2328945	+	322	58581838	-	XOO2215	-	putative transposase
1998	 62.26	0	2329310..2330692	+	460	122879165	-	XOO2216	-	putative ISXo8 transposase
1999	 53.94	-2	2330759..2330923	-	54	58581840	-	XOO2217	-	putative transposase
2000	 64.16	0	2331234..2331992	-	252	58581841	hbdH1	XOO2218	-	D-beta-hydroxybutyrate dehydrogenase
2001	 64.92	0	2331996..2332739	+	247	58581842	pssA	XOO2219	-	CDP-diacylglycerol-serine o-phosphatidyltransferase
2002	 65.64	0	2332753..2334021	+	422	58581843	phaE	XOO2220	-	PHA synthase subunit
2003	 61.28	0	2334018..2335094	+	358	58581844	phbC	XOO2221	-	poly (3-hydroxybutyric acid) synthase
2004	 59.60	-1	2335209..2335406	+	65	58581845	-	XOO2222	-	hypothetical protein
2005	 64.52	0	2335849..2337060	-	403	122879166	-	XOO2223	-	oxidoreductase
2006	 58.70	-1	2337136..2337474	+	112	58581847	-	XOO2224	-	hypothetical protein
2007	 64.63	0	2337577..2339937	+	786	58581848	tex	XOO2225	-	transcription-related protein
2008	 63.17	0	2340149..2341207	+	352	58581849	-	XOO2226	-	putative transposase
2009	 65.96	0	2341259..2341825	-	188	58581850	regR	XOO2227	-	two-component system regulatory protein
2010	 67.36	+1	2341822..2343123	-	433	58581851	regS	XOO2228	-	two-component system sensor protein
2011	 65.17	0	2343169..2344434	+	421	58581852	ispG	XOO2229	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2012	 65.31	0	2344415..2345152	+	245	58581853	-	XOO2230	-	phosphatidylglycerophosphatase B-related protein
2013	 63.66	0	2345293..2346456	-	387	58581854	proP	XOO2231	-	Prop transport protein
2014	 62.44	0	2346607..2347575	+	322	58581855	-	XOO2232	-	hypothetical protein
2015	 58.54	-1	2348049..2348417	-	122	58581856	ygeA	XOO2233	-	putative resistance protein
2016	 64.83	0	2348460..2349221	-	253	58581858	-	XOO2235	-	integral membrane protein
2017	 64.91	0	2349365..2350387	-	340	58581859	murB	XOO2236	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2018	 66.00	0	2350415..2351470	-	351	58581860	pyrD	XOO2237	-	dihydroorotate dehydrogenase 2
2019	 64.99	0	2351476..2352249	-	257	58581861	-	XOO2238	-	hypothetical protein
2020	 63.47	0	2352246..2352620	-	124	58581862	-	XOO2239	-	hypothetical protein
2021	 64.12	0	2353119..2354651	-	510	122879167	-	XOO2240	-	aldehyde dehydrogenase
2022	 65.29	0	2354985..2355275	+	96	58581864	tspO	XOO2241	-	tryptophan-rich sensory protein
2023	 65.56	0	2355922..2358462	+	846	58581865	metL	XOO2242	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2024	 68.63	+1	2358459..2359427	+	322	58581866	thrB	XOO2243	-	homoserine kinase
2025	 63.11	0	2360431..2361639	+	402	58581868	-	XOO2245	-	tannase precursor
2026	 65.28	0	2362363..2362722	-	119	58581869	-	XOO2246	-	hypothetical protein
2027	 68.58	+1	2362839..2364143	+	434	58581870	thrC	XOO2247	-	threonine synthase
2028	 67.03	0	2364168..2364989	+	273	58581871	-	XOO2248	-	hypothetical protein
2029	 65.33	0	2366098..2367666	+	522	58581874	hisS	XOO2251	-	histidyl-tRNA synthetase
2030	 58.92	-1	2368183..2368647	-	154	58581875	-	XOO2252	-	putative transposase
2031	 58.33	-1	2368613..2368984	-	123	58581876	-	XOO2253	-	putative transposase
2032	 70.64	+1	2369283..2369609	+	108	122879168	-	XOO2254	-	hypothetical protein
2033	 67.10	0	2369619..2370533	+	304	58581878	hisG	XOO2255	-	ATP phosphoribosyltransferase
2034	 66.36	0	2370530..2371825	+	431	58581879	hisD	XOO2256	-	histidinol dehydrogenase
2035	 65.81	0	2371744..2372913	+	389	58581880	hisC	XOO2257	-	histidinol-phosphate aminotransferase
2036	 63.03	0	2372910..2374037	+	375	585818