IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1661	 63.91	0	1944295..1945092	+	265	58581467	paaF	XOO1844	-	enoyl-CoA hydratase
1662	 65.56	0	1945092..1946264	+	390	58581468	-	XOO1845	-	enoyl-CoA hydratase
1663	 65.81	0	1946388..1947326	+	312	58581469	mmsB	XOO1846	-	3-hydroxyisobutirate dehydrogenase
1664	 65.56	0	1947535..1948530	+	331	58581470	czcD	XOO1847	-	cobalt-zinc-cadmium resistance protein
1665	 66.91	0	1948747..1950828	-	693	58581471	fadB	XOO1848	-	3-hydroxyacyl-CoA dehydrogenase
1666	 62.15	0	1950933..1951685	+	250	58581472	algU	XOO1849	-	RNA polymerase sigma factor RpoE
1667	 70.78	+1	1951682..1952581	+	299	58581473	-	XOO1850	-	regulatory protein
1668	 67.34	+1	1952508..1954277	+	589	58581474	mucD	XOO1851	-	periplasmic protease
1669	 62.24	0	1954443..1956248	+	601	58581475	lepA	XOO1852	-	GTP-binding protein LepA
1670	 58.80	-1	1956355..1957155	+	266	58581476	lepB	XOO1853	-	signal peptidase I
1671	 54.23	-2	1957186..1957563	+	125	58581477	-	XOO1854	-	hypothetical protein
1672	 63.58	0	1957553..1958233	+	226	58581478	rnc	XOO1855	-	ribonuclease III
1673	 65.56	0	1958230..1959129	+	299	58581479	era	XOO1856	-	GTP-binding protein Era
1674	 64.87	0	1959353..1960075	+	240	58581480	recO	XOO1857	-	DNA repair protein RecO
1675	 65.42	0	1960224..1960946	-	240	58581481	-	XOO1858	-	hypothetical protein
1676	 64.72	0	1961000..1962439	+	479	58581482	rumA	XOO1859	-	23S rRNA 5-methyluridine methyltransferase
1677	 60.04	-1	1962614..1963111	+	165	58581483	-	XOO1860	-	hypothetical protein
1678	 63.35	0	1963207..1964442	-	411	58581484	-	XOO1861	-	transposase
1679	 62.89	0	1964671..1966047	+	458	122879140	-	XOO1863	-	IS1478 transposase
1680	 65.88	0	1966092..1966850	+	252	58581487	frnE	XOO1864	-	polyketide synthase
1681	 65.20	0	1966810..1967901	+	363	58581488	-	XOO1865	-	hypothetical protein
1682	 64.83	0	1968082..1969659	+	525	58581489	-	XOO1866	-	hypothetical protein
1683	 67.86	+1	1969695..1970780	+	361	58581490	nagZ	XOO1867	-	beta-hexosaminidase
1684	 66.31	0	1970780..1971334	+	184	58581491	hpt	XOO1868	-	hypoxanthine-guanine phosphoribosyltransferase
1685	 63.55	0	1971402..1972172	+	256	58581492	deoD	XOO1869	-	5'-methylthioadenosine phosphorylase
1686	 59.65	-1	1972238..1972465	+	75	58581493	scoF	XOO1870	-	cold shock protein
1687	 67.60	+1	1974000..1974644	-	214	58581496	-	XOO1873	-	hypothetical protein
1688	 66.79	0	1974634..1977135	-	833	58581497	lhr2	XOO1874	-	helicase-related protein
1689	 66.67	0	1977132..1978736	-	534	161899000	lig2	XOO1875	-	ATP-dependent DNA ligase
1690	 72.22	+2	1978733..1978966	-	77	121632089	-	XOO4790	-	hypothetical protein
1691	 66.03	0	1978963..1980057	-	364	58581499	-	XOO1876	-	mRNA 3'-end processing factor
1692	 68.58	+1	1980322..1980687	-	121	58581500	-	XOO1877	-	hypothetical protein
1693	 65.72	0	1980684..1981319	-	211	58581501	-	XOO1878	-	hypothetical protein
1694	 66.26	0	1981372..1983081	-	569	58581502	-	XOO1879	-	sensor histidine kinase
1695	 69.11	+1	1983190..1983516	-	108	58581503	-	XOO1880	-	hypothetical protein
1696	 64.29	0	1984213..1985388	-	391	58581504	atoB	XOO1881	-	acetoacetyl-CoA thiolase
1697	 64.83	0	1985544..1988372	+	942	58581505	-	XOO1882	-	serine protease
1698	 63.49	0	1988433..1989533	-	366	58581506	leu	XOO1883	-	leucine dehydrogenase
1699	 61.14	0	1990001..1990561	-	186	58581507	-	XOO1884	-	hypothetical protein
1700	 55.17	-2	1990930..1991103	+	57	58581508	-	XOO1885	-	hypothetical protein
1701	 60.39	0	1991264..1991518	-	84	58581509	-	XOO1886	-	hypothetical protein
1702	 64.79	0	1991693..1991959	+	88	58581510	-	XOO1887	-	hypothetical protein
1703	 58.74	-1	1992150..1992818	-	222	58581511	-	XOO1888	-	hypothetical protein
1704	 62.73	0	1992892..1993881	+	329	58581512	-	XOO1889	-	ISxac1 transposase
1705	 63.68	0	1993882..1994115	+	77	58581513	-	XOO1890	-	ISxac1 transposase
1706	 62.26	0	1994141..1995523	+	460	122879141	-	XOO1891	-	putative ISXo8 transposase
1707	 62.90	0	1995916..1996101	-	61	121632090	-	XOO4791	-	hypothetical protein
1708	 66.31	0	1996291..1997697	-	468	58581515	yegD	XOO1892	-	heat shock protein
1709	 58.33	-1	1998184..1998279	-	31	58581517	slyD	XOO1894	-	peptidyl-prolyl cis-trans isomerase
1710	 63.11	0	1998455..1999690	-	411	58581518	-	XOO1895	-	transposase
1711	 62.92	0	1999938..2000870	-	310	58581520	catA	XOO1897	-	cation transport protein
1712	 61.57	0	2000928..2001437	+	169	58581521	-	XOO1898	-	hypothetical protein
1713	 64.94	0	2001726..2002649	-	307	58581522	-	XOO1899	-	hypothetical protein
1714	 65.47	0	2002907..2004247	-	446	58581523	nerA	XOO1900	-	GTN reductase
1715	 64.60	0	2004246..2005457	+	403	58581524	araJ	XOO1901	-	MFS transporter
1716	 62.72	0	2006020..2006475	+	151	58581525	-	XOO1902	-	hypothetical protein
1717	 63.58	0	2006608..2007351	+	247	58581526	-	XOO1903	-	hypothetical protein
1718	 68.14	+1	2007387..2007995	+	202	58581527	-	XOO1904	-	hypothetical protein
1719	 67.18	0	2008055..2008249	+	64	58581528	-	XOO1905	-	hypothetical protein
1720	 67.10	0	2008319..2009689	+	456	122879142	acvB	XOO1906	-	virulence protein
1721	 67.41	+1	2010313..2012877	-	854	122879143	-	XOO1907	-	hypothetical protein
1722	 68.03	+1	2012946..2013311	+	121	58581531	-	XOO1908	-	hypothetical protein
1723	 67.03	0	2013290..2013847	+	185	58581532	-	XOO1909	-	hypothetical protein
1724	 62.73	0	2013825..2014205	+	126	58581533	-	XOO1910	-	hypothetical protein
1725	 64.89	0	2014368..2015438	-	356	58581534	-	XOO1911	-	hypothetical protein
1726	 66.92	0	2015456..2016238	-	260	58581535	-	XOO1912	-	hypothetical protein
1727	 65.75	0	2016235..2016780	-	181	58581536	-	XOO1913	-	hypothetical protein
1728	 63.50	0	2016777..2018072	-	431	122879144	cfaA	XOO1914	-	cyclopropane-fatty-acyl-phospholipid synthase
1729	 65.52	0	2018069..2019028	-	319	58581538	-	XOO1915	-	hypothetical protein
1730	 64.85	0	2018953..2020275	-	440	58581539	-	XOO1916	-	dehydrogenase
1731	 64.75	0	2020200..2021348	-	382	58581540	desC	XOO1917	-	delta 9 acyl-lipid fatty acid desaturase
1732	 67.61	+1	2021424..2022269	-	281	58581541	-	XOO1918	-	hypothetical protein
1733	 65.25	0	2022254..2022817	-	187	122879145	rpoE	XOO1919	-	RNA polymerase sigma factor
1734	 60.16	-1	2022876..2023244	-	122	58581543	-	XOO1920	-	hypothetical protein
1735	 67.31	0	2023330..2024112	-	260	58581544	-	XOO1921	-	hypothetical protein
1736	 67.30	0	2024731..2025201	-	156	58581545	ydgM	XOO1922	-	ferredoxin
1737	 63.69	0	2025161..2025832	-	223	58581546	-	XOO1923	-	hypothetical protein
1738	 65.23	0	2025972..2028056	-	694	58581547	metG	XOO1924	-	methionyl-tRNA synthetase
1739	 65.62	0	2028281..2028760	-	159	58581548	-	XOO1925	-	hypothetical protein
1740	 63.27	0	2029494..2030552	+	352	58581551	-	XOO1928	-	putative transposase
1741	 63.81	0	2030824..2032221	+	465	161898999	ykfD	XOO1929	-	S-methylmethionine transporter
1742	 64.62	0	2032218..2033195	+	325	161898998	mmuM	XOO1930	-	homocysteine methyltransferase
1743	 65.38	0	2033377..2035314	-	645	122879146	-	XOO1931	-	hypothetical protein
1744	 63.45	0	2035735..2036511	-	258