IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1632	 62.22	0	1906115..1906429	+	104	58581433	-	XOO1810	-	hypothetical protein
1633	 66.01	0	1907732..1907884	-	50	58581436	-	XOO1813	-	hypothetical protein
1634	 60.62	0	1907913..1908557	-	214	58581437	hly3	XOO1814	-	hemolysin III
1635	 63.93	0	1908633..1910237	-	534	58581438	prfC	XOO1815	-	peptide chain release factor 3
1636	 69.82	+1	1910370..1911257	-	295	122879135	-	XOO1816	-	hypothetical protein
1637	 65.88	0	1911471..1912619	+	382	58581440	metA	XOO1817	-	homoserine O-acetyltransferase
1638	 64.20	0	1912616..1913833	+	405	58581441	metB	XOO1818	-	cystathionine gamma-synthase
1639	 65.48	0	1914251..1914925	+	224	122879136	-	XOO1820	-	homoserine dehydrogenase
1640	 64.06	0	1915599..1916981	-	460	122879137	sdaA	XOO1821	-	L-serine dehydratase
1641	 67.47	+1	1917054..1917302	+	82	58581445	-	XOO1822	-	hypothetical protein
1642	 65.64	0	1917388..1917777	-	129	58581446	-	XOO1823	-	cold shock domain-containing protein
1643	 64.39	0	1918102..1918671	-	189	58581447	-	XOO1824	-	hypothetical protein
1644	 64.01	0	1918681..1919244	-	187	58581448	yodB	XOO1825	-	cytochrome B561
1645	 68.17	+1	1919241..1919903	-	220	58581449	-	XOO1826	-	hypothetical protein
1646	 64.02	0	1919943..1923575	+	1210	58581450	-	XOO1827	-	histidine kinase-response regulator hybrid protein
1647	 64.20	0	1923865..1927428	+	1187	122879138	-	XOO1828	-	histidine kinase/response regulator hybrid protein
1648	 57.96	-1	1927425..1930031	+	868	58581452	-	XOO1829	-	histidine kinase-response regulator hybrid protein
1649	 61.20	0	1930083..1931051	+	322	58581453	-	XOO1830	-	putative transposase
1650	 62.57	0	1931162..1932235	+	357	58581454	-	XOO1831	-	histidine kinase-response regulator hybrid protein
1651	 62.07	0	1932260..1932433	-	57	121632088	emrA	XOO4789	-	MFS transporter
1652	 55.24	-2	1932551..1932655	+	34	58581455	tnp	XOO1832	-	transposase
1653	 61.33	0	1932855..1933154	+	99	58581456	-	XOO1833	-	hypothetical protein
1654	 68.92	+1	1933339..1933560	-	73	58581457	-	XOO1834	-	ISxac3 transposase
1655	 66.56	0	1933766..1935697	+	643	58581458	-	XOO1835	-	hypothetical protein
1656	 63.66	0	1935819..1936217	+	132	58581459	-	XOO1836	-	hypothetical protein
1657	 64.05	0	1937238..1938230	-	330	58581461	bga	XOO1838	-	beta-galactosidase
1658	 67.03	0	1940077..1941462	-	461	122879139	-	XOO1841	-	transcriptional regulator
1659	 65.21	0	1941601..1943106	+	501	58581465	mmsA	XOO1842	-	methylmalonate-semialdehyde dehydrogenase
1660	 64.30	0	1943075..1944298	+	407	58581466	fadE9	XOO1843	-	acyl-CoA dehydrogenase
1661	 63.91	0	1944295..1945092	+	265	58581467	paaF	XOO1844	-	enoyl-CoA hydratase
1662	 65.56	0	1945092..1946264	+	390	58581468	-	XOO1845	-	enoyl-CoA hydratase
1663	 65.81	0	1946388..1947326	+	312	58581469	mmsB	XOO1846	-	3-hydroxyisobutirate dehydrogenase
1664	 65.56	0	1947535..1948530	+	331	58581470	czcD	XOO1847	-	cobalt-zinc-cadmium resistance protein
1665	 66.91	0	1948747..1950828	-	693	58581471	fadB	XOO1848	-	3-hydroxyacyl-CoA dehydrogenase
1666	 62.15	0	1950933..1951685	+	250	58581472	algU	XOO1849	-	RNA polymerase sigma factor RpoE
1667	 70.78	+1	1951682..1952581	+	299	58581473	-	XOO1850	-	regulatory protein
1668	 67.34	+1	1952508..1954277	+	589	58581474	mucD	XOO1851	-	periplasmic protease
1669	 62.24	0	1954443..1956248	+	601	58581475	lepA	XOO1852	-	GTP-binding protein LepA
1670	 58.80	-1	1956355..1957155	+	266	58581476	lepB	XOO1853	-	signal peptidase I
1671	 54.23	-2	1957186..1957563	+	125	58581477	-	XOO1854	-	hypothetical protein
1672	 63.58	0	1957553..1958233	+	226	58581478	rnc	XOO1855	-	ribonuclease III
1673	 65.56	0	1958230..1959129	+	299	58581479	era	XOO1856	-	GTP-binding protein Era
1674	 64.87	0	1959353..1960075	+	240	58581480	recO	XOO1857	-	DNA repair protein RecO
1675	 65.42	0	1960224..1960946	-	240	58581481	-	XOO1858	-	hypothetical protein
1676	 64.72	0	1961000..1962439	+	479	58581482	rumA	XOO1859	-	23S rRNA 5-methyluridine methyltransferase
1677	 60.04	-1	1962614..1963111	+	165	58581483	-	XOO1860	-	hypothetical protein
1678	 63.35	0	1963207..1964442	-	411	58581484	-	XOO1861	-	transposase
1679	 62.89	0	1964671..1966047	+	458	122879140	-	XOO1863	-	IS1478 transposase
1680	 65.88	0	1966092..1966850	+	252	58581487	frnE	XOO1864	-	polyketide synthase
1681	 65.20	0	1966810..1967901	+	363	58581488	-	XOO1865	-	hypothetical protein
1682	 64.83	0	1968082..1969659	+	525	58581489	-	XOO1866	-	hypothetical protein
1683	 67.86	+1	1969695..1970780	+	361	58581490	nagZ	XOO1867	-	beta-hexosaminidase
1684	 66.31	0	1970780..1971334	+	184	58581491	hpt	XOO1868	-	hypoxanthine-guanine phosphoribosyltransferase
1685	 63.55	0	1971402..1972172	+	256	58581492	deoD	XOO1869	-	5'-methylthioadenosine phosphorylase
1686	 59.65	-1	1972238..1972465	+	75	58581493	scoF	XOO1870	-	cold shock protein
1687	 67.60	+1	1974000..1974644	-	214	58581496	-	XOO1873	-	hypothetical protein
1688	 66.79	0	1974634..1977135	-	833	58581497	lhr2	XOO1874	-	helicase-related protein
1689	 66.67	0	1977132..1978736	-	534	161899000	lig2	XOO1875	-	ATP-dependent DNA ligase
1690	 72.22	+2	1978733..1978966	-	77	121632089	-	XOO4790	-	hypothetical protein
1691	 66.03	0	1978963..1980057	-	364	58581499	-	XOO1876	-	mRNA 3'-end processing factor
1692	 68.58	+1	1980322..1980687	-	121	58581500	-	XOO1877	-	hypothetical protein
1693	 65.72	0	1980684..1981319	-	211	58581501	-	XOO1878	-	hypothetical protein
1694	 66.26	0	1981372..1983081	-	569	58581502	-	XOO1879	-	sensor histidine kinase
1695	 69.11	+1	1983190..1983516	-	108	58581503	-	XOO1880	-	hypothetical protein
1696	 64.29	0	1984213..1985388	-	391	58581504	atoB	XOO1881	-	acetoacetyl-CoA thiolase
1697	 64.83	0	1985544..1988372	+	942	58581505	-	XOO1882	-	serine protease
1698	 63.49	0	1988433..1989533	-	366	58581506	leu	XOO1883	-	leucine dehydrogenase
1699	 61.14	0	1990001..1990561	-	186	58581507	-	XOO1884	-	hypothetical protein
1700	 55.17	-2	1990930..1991103	+	57	58581508	-	XOO1885	-	hypothetical protein
1701	 60.39	0	1991264..1991518	-	84	58581509	-	XOO1886	-	hypothetical protein
1702	 64.79	0	1991693..1991959	+	88	58581510	-	XOO1887	-	hypothetical protein
1703	 58.74	-1	1992150..1992818	-	222	58581511	-	XOO1888	-	hypothetical protein
1704	 62.73	0	1992892..1993881	+	329	58581512	-	XOO1889	-	ISxac1 transposase
1705	 63.68	0	1993882..1994115	+	77	58581513	-	XOO1890	-	ISxac1 transposase
1706	 62.26	0	1994141..1995523	+	460	122879141	-	XOO1891	-	putative ISXo8 transposase
1707	 62.90	0	1995916..1996101	-	61	121632090	-	XOO4791	-	hypothetical protein
1708	 66.31	0	1996291..1997697	-	468	58581515	yegD	XOO1892	-	heat shock protein
1709	 58.33	-1	1998184..1998279	-	31	58581517	slyD	XOO1894	-	peptidyl-prolyl cis-trans isomerase
1710	 63.11	0	1998455..1999690	-	411	58581518	-	XOO1895	-	transposase
1711	 62.92	0	1999938..2000870	-	310	58581520	catA	XOO1897	-	cation transport protein
1712	 61.57	0	2000928..2001437	+	169	58581521	-	XOO1898	-	hypothetical protein
1713	 64.94	0	2001726..2002649	-	307	58581522	-	XOO1899	-	hypothetical protein
1714	 65.47	0	2002907..2004247	-	446	58581523	nerA	XOO1900	-	GTN reductase
1715	 64.60	0	2004246..2005457	+	403	58581524	araJ	XOO1901	-	MFS transporter
1716	 62.72	0	2006020..2006475	+	151	58581525	-	XOO1902	-	hypothetical protein
1717	 63.58	0	2006608..2007351	+	247	58581526	-	XOO1903	-	hypothetical protein
1718	 68.14	+1	2007387..2007995	+	202	58581527	-	XOO1904	-	hypothetical protein
1719	 67.18	0	2008055..2008249	+	64	58581528	-	XOO1905	-	hypothetical protein
1720	 67.10	0	2008319..2009689	+	456	122879142	acvB	XOO1906	-	virulence protein
1721	 67.41	+1	2010313..2012877	-	854	122879143	-	XOO1907	-	hypothetical protein
1722	 68.03	+1	2012946..2013311	+	121	58581531	-	XOO1908	-	hypothetical protein
1723	 67.03	0	2013290..2013847	+	185	58581532	-	XOO1909	-	hypothetical protein
1724	 62.73	0	2013825..2014205	+	126	58581533	-	XOO1910	-	hypothetical protein
1725	 64.89	0	2014368..2015438	-	356	58581534	-	XOO1911	-	hypothetical protein
1726	 66.92	0	2015456..2016238	-	260	58581535	-	XOO1912	-	hypothetical protein
1727	 65.75	0	2016235..2016780	-	181	58581536	-	XOO1913	-	hypothetical protein
1728	 63.50	0	2016777..2018072	-	431	122879144	cfaA	XOO1914	-	cyclopropane-fatty-acyl-phospholipid synthase
1729	 65.52	0	2018069..2019028	-	319	58581538	-	XOO1915	-	hypothetical protein
1730	 64.85	0	2018953..2020275	-	440	58581539	-	XOO1916	-	dehydrogenase
1731	 64.75	0	2020200..2021348	-	382	58581540	desC	XOO1917	-	delta 9 acyl-lipid fatty acid desaturase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.