IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1606	 64.28	0	1873188..1874903	-	571	58581406	fucA1	XOO1783	-	alpha-L-fucosidase
1607	 61.17	0	1875083..1877794	-	903	58581407	iroN	XOO1784	-	TonB-dependent receptor
1608	 66.58	0	1878412..1879512	+	366	58581408	glk	XOO1785	-	glucokinase
1609	 68.91	+1	1879814..1880617	-	267	58581409	-	XOO1786	-	hypothetical protein
1610	 65.89	0	1880539..1881957	-	472	58581410	bioA	XOO1787	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1611	 64.80	0	1881906..1882547	+	213	58581412	nudE	XOO1789	-	ADP-ribose diphosphatase NudE
1612	 66.04	0	1882544..1883344	+	266	122879134	cysQ	XOO1788	-	sulfite synthesis pathway protein
1613	 64.61	0	1883587..1884606	+	339	58581413	mazG	XOO1790	-	nucleoside triphosphate pyrophosphohydrolase
1614	 64.71	0	1884603..1884857	+	84	58581414	-	XOO1791	-	hypothetical protein
1615	 66.67	0	1884845..1884940	+	31	121632085	-	XOO4784	-	hypothetical protein
1616	 62.94	0	1885238..1886203	+	321	58581415	-	XOO1792	-	hypothetical protein
1617	 66.32	0	1886207..1886785	+	192	58581416	-	XOO1793	-	hypothetical protein
1618	 63.96	0	1886813..1887922	+	369	58581417	gcvT	XOO1794	-	glycine cleavage system aminomethyltransferase T
1619	 63.38	0	1888059..1888454	+	131	58581418	gcvH	XOO1795	-	glycine cleavage system protein H
1620	 57.34	-1	1889147..1890229	+	360	58581419	-	XOO1796	-	hypothetical protein
1621	 65.99	0	1890823..1892289	-	488	58581420	bla	XOO1797	-	beta-lactamase
1622	 62.52	0	1892649..1893806	+	385	58581421	-	XOO1798	-	hypothetical protein
1623	 65.33	0	1894081..1894530	+	149	58581423	-	XOO1800	-	hypothetical protein
1624	 63.65	0	1897395..1898288	-	297	58581426	-	XOO1803	-	hypothetical protein
1625	 65.14	0	1898380..1899033	+	217	58581427	-	XOO1804	-	transcriptional regulator
1626	 58.49	-1	1899143..1902052	-	969	58581428	-	XOO1805	-	hypothetical protein
1627	 65.63	0	1902300..1903169	-	289	58581429	-	XOO1806	-	hypothetical protein
1628	 65.71	0	1903290..1904333	-	347	58581430	-	XOO1807	-	heat shock protein
1629	 64.23	0	1904255..1904992	+	245	121632086	mtgA	XOO4787	-	monofunctional biosynthetic peptidoglycan transglycosylase
1630	 63.41	0	1904935..1906041	+	368	58581432	gtrB	XOO1809	-	glucosyl transferase
1631	 58.59	-1	1906001..1906099	+	32	121632087	-	XOO4788	-	hypothetical protein
1632	 62.22	0	1906115..1906429	+	104	58581433	-	XOO1810	-	hypothetical protein
1633	 66.01	0	1907732..1907884	-	50	58581436	-	XOO1813	-	hypothetical protein
1634	 60.62	0	1907913..1908557	-	214	58581437	hly3	XOO1814	-	hemolysin III
1635	 63.93	0	1908633..1910237	-	534	58581438	prfC	XOO1815	-	peptide chain release factor 3
1636	 69.82	+1	1910370..1911257	-	295	122879135	-	XOO1816	-	hypothetical protein
1637	 65.88	0	1911471..1912619	+	382	58581440	metA	XOO1817	-	homoserine O-acetyltransferase
1638	 64.20	0	1912616..1913833	+	405	58581441	metB	XOO1818	-	cystathionine gamma-synthase
1639	 65.48	0	1914251..1914925	+	224	122879136	-	XOO1820	-	homoserine dehydrogenase
1640	 64.06	0	1915599..1916981	-	460	122879137	sdaA	XOO1821	-	L-serine dehydratase
1641	 67.47	+1	1917054..1917302	+	82	58581445	-	XOO1822	-	hypothetical protein
1642	 65.64	0	1917388..1917777	-	129	58581446	-	XOO1823	-	cold shock domain-containing protein
1643	 64.39	0	1918102..1918671	-	189	58581447	-	XOO1824	-	hypothetical protein
1644	 64.01	0	1918681..1919244	-	187	58581448	yodB	XOO1825	-	cytochrome B561
1645	 68.17	+1	1919241..1919903	-	220	58581449	-	XOO1826	-	hypothetical protein
1646	 64.02	0	1919943..1923575	+	1210	58581450	-	XOO1827	-	histidine kinase-response regulator hybrid protein
1647	 64.20	0	1923865..1927428	+	1187	122879138	-	XOO1828	-	histidine kinase/response regulator hybrid protein
1648	 57.96	-1	1927425..1930031	+	868	58581452	-	XOO1829	-	histidine kinase-response regulator hybrid protein
1649	 61.20	0	1930083..1931051	+	322	58581453	-	XOO1830	-	putative transposase
1650	 62.57	0	1931162..1932235	+	357	58581454	-	XOO1831	-	histidine kinase-response regulator hybrid protein
1651	 62.07	0	1932260..1932433	-	57	121632088	emrA	XOO4789	-	MFS transporter
1652	 55.24	-2	1932551..1932655	+	34	58581455	tnp	XOO1832	-	transposase
1653	 61.33	0	1932855..1933154	+	99	58581456	-	XOO1833	-	hypothetical protein
1654	 68.92	+1	1933339..1933560	-	73	58581457	-	XOO1834	-	ISxac3 transposase
1655	 66.56	0	1933766..1935697	+	643	58581458	-	XOO1835	-	hypothetical protein
1656	 63.66	0	1935819..1936217	+	132	58581459	-	XOO1836	-	hypothetical protein
1657	 64.05	0	1937238..1938230	-	330	58581461	bga	XOO1838	-	beta-galactosidase
1658	 67.03	0	1940077..1941462	-	461	122879139	-	XOO1841	-	transcriptional regulator
1659	 65.21	0	1941601..1943106	+	501	58581465	mmsA	XOO1842	-	methylmalonate-semialdehyde dehydrogenase
1660	 64.30	0	1943075..1944298	+	407	58581466	fadE9	XOO1843	-	acyl-CoA dehydrogenase
1661	 63.91	0	1944295..1945092	+	265	58581467	paaF	XOO1844	-	enoyl-CoA hydratase
1662	 65.56	0	1945092..1946264	+	390	58581468	-	XOO1845	-	enoyl-CoA hydratase
1663	 65.81	0	1946388..1947326	+	312	58581469	mmsB	XOO1846	-	3-hydroxyisobutirate dehydrogenase
1664	 65.56	0	1947535..1948530	+	331	58581470	czcD	XOO1847	-	cobalt-zinc-cadmium resistance protein
1665	 66.91	0	1948747..1950828	-	693	58581471	fadB	XOO1848	-	3-hydroxyacyl-CoA dehydrogenase
1666	 62.15	0	1950933..1951685	+	250	58581472	algU	XOO1849	-	RNA polymerase sigma factor RpoE
1667	 70.78	+1	1951682..1952581	+	299	58581473	-	XOO1850	-	regulatory protein
1668	 67.34	+1	1952508..1954277	+	589	58581474	mucD	XOO1851	-	periplasmic protease
1669	 62.24	0	1954443..1956248	+	601	58581475	lepA	XOO1852	-	GTP-binding protein LepA
1670	 58.80	-1	1956355..1957155	+	266	58581476	lepB	XOO1853	-	signal peptidase I
1671	 54.23	-2	1957186..1957563	+	125	58581477	-	XOO1854	-	hypothetical protein
1672	 63.58	0	1957553..1958233	+	226	58581478	rnc	XOO1855	-	ribonuclease III
1673	 65.56	0	1958230..1959129	+	299	58581479	era	XOO1856	-	GTP-binding protein Era
1674	 64.87	0	1959353..1960075	+	240	58581480	recO	XOO1857	-	DNA repair protein RecO
1675	 65.42	0	1960224..1960946	-	240	58581481	-	XOO1858	-	hypothetical protein
1676	 64.72	0	1961000..1962439	+	479	58581482	rumA	XOO1859	-	23S rRNA 5-methyluridine methyltransferase
1677	 60.04	-1	1962614..1963111	+	165	58581483	-	XOO1860	-	hypothetical protein
1678	 63.35	0	1963207..1964442	-	411	58581484	-	XOO1861	-	transposase
1679	 62.89	0	1964671..1966047	+	458	122879140	-	XOO1863	-	IS1478 transposase
1680	 65.88	0	1966092..1966850	+	252	58581487	frnE	XOO1864	-	polyketide synthase
1681	 65.20	0	1966810..1967901	+	363	58581488	-	XOO1865	-	hypothetical protein
1682	 64.83	0	1968082..1969659	+	525	58581489	-	XOO1866	-	hypothetical protein
1683	 67.86	+1	1969695..1970780	+	361	58581490	nagZ	XOO1867	-	beta-hexosaminidase
1684	 66.31	0	1970780..1971334	+	184	58581491	hpt	XOO1868	-	hypoxanthine-guanine phosphoribosyltransferase
1685	 63.55	0	1971402..1972172	+	256	58581492	deoD	XOO1869	-	5'-methylthioadenosine phosphorylase
1686	 59.65	-1	1972238..1972465	+	75	58581493	scoF	XOO1870	-	cold shock protein
1687	 67.60	+1	1974000..1974644	-	214	58581496	-	XOO1873	-	hypothetical protein
1688	 66.79	0	1974634..1977135	-	833