IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1544	 62.41	0	1769367..1771151	+	594	58581337	-	XOO1714	-	phage-related terminase
1545	 65.79	0	1771148..1772173	+	341	58581338	-	XOO1715	-	phage-related capsid packaging protein
1546	 67.52	+1	1772362..1773063	+	233	122879126	-	XOO1717	-	site-specific DNA-methyltransferase
1547	 61.47	0	1774916..1775473	-	185	58581341	-	XOO1718	-	hypothetical protein
1548	 67.96	+1	1776880..1777809	+	309	122879127	-	XOO1719	-	hypothetical protein
1549	 62.34	0	1777915..1780641	+	908	58581343	-	XOO1720	-	hypothetical protein
1550	 68.16	+1	1781422..1781955	+	177	121632083	-	XOO4780	-	hypothetical protein
1551	 60.65	0	1782622..1783053	-	143	58581344	-	XOO1721	-	response regulator
1552	 64.89	0	1783105..1783611	-	168	58581345	-	XOO1722	-	hypothetical protein
1553	 65.00	0	1783741..1785537	-	598	58581346	recQ	XOO1723	-	DNA helicase
1554	 62.96	0	1786095..1786688	-	197	58581347	-	XOO1724	-	DNA-binding related protein
1555	 66.45	0	1786742..1790863	+	1373	58581348	hrpA	XOO1725	-	ATP-dependent RNA helicase
1556	 61.85	0	1790787..1791929	+	380	58581349	-	XOO1726	-	putative transposase
1557	 60.66	0	1792164..1794878	-	904	58581350	fepA	XOO1727	-	TonB-dependent receptor
1558	 68.86	+1	1795230..1795502	-	90	58581352	glk	XOO1729	-	glucose kinase
1559	 64.05	0	1795582..1796001	-	139	58581353	glk	XOO1730	-	glucose kinase
1560	 64.49	0	1796302..1797957	-	551	58581354	-	XOO1731	-	hypothetical protein
1561	 62.84	0	1798245..1798766	-	173	58581355	-	XOO1732	-	hypothetical protein
1562	 67.88	+1	1798820..1800136	-	438	58581356	pqqE	XOO1733	-	pyrroloquinoline quinone biosynthesis protein PqqE
1563	 63.62	0	1800210..1800998	-	262	58581357	pqqC	XOO1734	-	pyrroloquinoline quinone biosynthesis protein PqqC
1564	 63.67	0	1800959..1801858	-	299	58581358	pqqG	XOO1735	-	pyrroloquinoline quinone biosynthesis protein PqqB
1565	 66.67	0	1802201..1804498	+	765	58581359	relA	XOO1736	-	ATP:GTP 3'-pyrophosphotranferase
1566	 70.37	+1	1804563..1806209	+	548	58581360	-	XOO1737	-	hypothetical protein
1567	 65.43	0	1806542..1808569	-	675	122879128	-	XOO1738	-	glycosyltransferase
1568	 67.77	+1	1808886..1811330	+	814	58581362	ponB	XOO1739	-	penicillin-binding protein 1B
1569	 69.83	+1	1811332..1811868	+	178	58581363	-	XOO1740	-	hypothetical protein
1570	 66.22	0	1812068..1814095	+	675	58581364	yoaA	XOO1741	-	ATP-dependent helicase
1571	 70.11	+1	1814016..1814828	+	270	58581365	-	XOO1742	-	hypothetical protein
1572	 67.98	+1	1814825..1815739	+	304	58581366	draG	XOO1743	-	dinitrogenase reductase activationg glycohydrolase
1573	 68.26	+1	1816033..1816908	-	291	58581367	tonB	XOO1744	-	TonB protein
1574	 67.80	+1	1816905..1817876	-	323	58581368	gshB	XOO1745	-	glutathione synthetase
1575	 54.73	-2	1818105..1818506	+	133	122879129	pilG	XOO1746	-	pilus protein
1576	 59.23	-1	1818524..1818886	+	120	58581370	pilH	XOO1747	-	PilH
1577	 63.86	0	1818883..1819416	+	177	58581371	pilI	XOO1748	-	pilus biogenesis protein
1578	 64.70	0	1819456..1821492	+	678	58581372	pilJ	XOO1749	-	pilus biogenesis protein
1579	 66.31	0	1826572..1828560	+	662	58581374	pilL	XOO1751	-	PilL
1580	 67.95	+1	1828526..1829770	+	414	58581375	-	XOO1752	-	hypothetical protein
1581	 64.78	0	1829804..1830280	+	158	58581376	-	XOO1753	-	hypothetical protein
1582	 65.06	0	1830531..1831154	+	207	58581377	rimJ	XOO1754	-	ribosomal protein alanine acetyltransferase
1583	 61.12	0	1831166..1832428	-	420	58581378	-	XOO1755	-	ISRSO5-transposase protein
1584	 67.82	+1	1833477..1833737	-	86	58581379	-	XOO1756	-	hypothetical protein
1585	 64.10	0	1833983..1835035	-	350	122879130	-	XOO1757	-	hypothetical protein
1586	 62.50	0	1835492..1835659	+	55	121632084	-	XOO4782	-	putative transposase
1587	 64.51	0	1836871..1837935	+	354	122879131	aspG	XOO1760	-	asparaginase
1588	 65.44	0	1837932..1838663	+	243	58581384	cutC	XOO1761	-	copper homeostasis protein
1589	 58.88	-1	1838688..1840241	-	517	122879132	-	XOO1762	-	leucin rich protein
1590	 65.31	0	1840788..1841891	-	367	58581386	-	XOO1763	-	hypothetical protein
1591	 61.24	0	1842394..1842780	-	128	58581387	-	XOO1764	-	transposase
1592	 65.77	0	1843972..1844082	-	36	58581390	-	XOO1767	-	hypothetical protein
1593	 66.25	0	1844913..1847321	+	802	122879133	-	XOO1768	-	hypothetical protein
1594	 64.93	0	1847371..1849326	-	651	58581392	bga	XOO1769	-	beta-galactosidase
1595	 65.33	0	1849492..1851894	-	800	58581393	-	XOO1770	-	hypothetical protein
1596	 66.73	0	1851970..1853433	-	487	58581394	-	XOO1771	-	hypothetical protein
1597	 64.19	0	1854236..1855651	+	471	58581395	-	XOO1772	-	membrane-fusion protein
1598	 61.20	0	1856295..1857263	-	322	58581396	-	XOO1773	-	putative transposase
1599	 52.01	-2	1857506..1858624	+	372	58581397	-	XOO1774	-	hypothetical protein
1600	 62.38	0	1860063..1861322	-	419	58581400	-	XOO1777	-	transposase
1601	 60.57	0	1861431..1863545	+	704	58581401	-	XOO1778	-	colicin V secretion ABC transporter ATP-binding protein
1602	 66.22	0	1863690..1866359	-	889	58581402	-	XOO1779	-	glucan 1,4-beta-glucosidase
1603	 64.95	0	1866566..1869247	-	893	58581403	-	XOO1780	-	beta-mannosidase
1604	 65.52	0	1869269..1871803	-	844	58581404	nahA	XOO1781	-	beta-hexosaminidase
1605	 59.55	-1	1872117..1873184	-	355	58581405	-	XOO1782	-	hypothetical protein
1606	 64.28	0	1873188..1874903	-	571	58581406	fucA1	XOO1783	-	alpha-L-fucosidase
1607	 61.17	0	1875083..1877794	-	903	58581407	iroN	XOO1784	-	TonB-dependent receptor
1608	 66.58	0	1878412..1879512	+	366	58581408	glk	XOO1785	-	glucokinase
1609	 68.91	+1	1879814..1880617	-	267	58581409	-	XOO1786	-	hypothetical protein
1610	 65.89	0	1880539..1881957	-	472	58581410	bioA	XOO1787	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1611	 64.80	0	1881906..1882547	+	213	58581412	nudE	XOO1789	-	ADP-ribose diphosphatase NudE
1612	 66.04	0	1882544..1883344	+	266	122879134	cysQ	XOO1788	-	sulfite synthesis pathway protein
1613	 64.61	0	1883587..1884606	+	339	58581413	mazG	XOO1790	-	nucleoside triphosphate pyrophosphohydrolase
1614	 64.71	0	1884603..1884857	+	84	58581414	-	XOO1791	-	hypothetical protein
1615	 66.67	0	1884845..1884940	+	31	121632085	-	XOO4784	-	hypothetical protein
1616	 62.94	0	1885238..1886203	+	321	58581415	-	XOO1792	-	hypothetical protein
1617	 66.32	0	1886207..1886785	+	192	58581416	-	XOO1793	-	hypothetical protein
1618	 63.96	0	1886813..1887922	+	369	58581417	gcvT	XOO1794	-	glycine cleavage system aminomethyltransferase T
1619	 63.38	0	1888059..1888454	+	131	58581418	gcvH	XOO1795	-	glycine cleavage system protein H
1620	 57.34	-1	1889147..1890229	+	360	58581419	-	XOO1796	-	hypothetical protein
1621	 65.99	0	1890823..1892289	-	488	58581420	bla	XOO1797	-	beta-lactamase
1622	 62.52	0	1892649..1893806	+	385	58581421	-	XOO1798	-	hypothetical protein
1623	 65.33	0	1894081..1894530	+	149	58581423	-	XOO1800	-	hypothetical protein
1624	 63.65	0	1897395..1898288	-	297	58581426	-	XOO1803	-	hypothetical protein
1625	 65.14	0	1898380..1899033	+	217	58581427	-	XOO1804	-	transcriptional regulator
1626	 58.49	-1	1899143..1902052	-	969	58581428	-	XOO1805	-	hypothetical protein
1627	 65.63	0	1902300..1903169	-	289	58581429	-	XOO1806	-	hypothetical protein
1628	 65.71	0	1903290..1904333	-	347	58581430	-	XOO1807	-	heat shock protein
1629	 64.23	0	1904255..1904992	+	245	121632086	mtgA	XOO4787	-	monofunctional biosynthetic peptidoglycan transglycosylase
1630	 63.41	0	1904935..1906041	+	368	58581432	gtrB	XOO1809	-	glucosyl transferase
1631	 58.59	-1	1906001..1906099	+	32	121632087	-	XOO4788	-	hypothetical protein
1632	 62.22	0	1906115..1906429	+	104	58581433	-	XOO1810	-	hypothetical protein
1633	 66.01	0	1907732..1907884	-	50	58581436	-	XOO1813	-	hypothetical protein
1634	 60.62	0	1907913..1908557	-	214	58581437	hly3	XOO1814	-	hemolysin III
1635	 63.93	0	1908633..1910237	-	534	58581438	prfC	XOO1815	-	peptide chain release factor 3
1636	 69.82	+1	1910370..1911257	-	295	122879135	-	XOO1816	-	hypothetical protein
1637	 65.88	0	1911471..1912619	+	382	58581440	metA	XOO1817	-	homoserine O-acetyltransferase
1638	 64.20	0	1912616..1913833	+	405	58581441	metB	XOO1818	-	cystathionine gamma-synthase
1639	 65.48	0	1914251..1914925	+	224	122879136	-	XOO1820	-	homoserine dehydrogenase
1640	 64.06	0	1915599..1916981	-	460	122879137	sdaA	XOO1821	-	L-serine dehydratase
1641	 67.47	+1	1917054..1917302	+	82	58581445	-	XOO1822	-	hypothetical protein
1642	 65.64	0	1917388..1917777	-	129	58581446	-	XOO1823	-	cold shock domain-containing protein
1643	 64.39	0	1918102..1918671	-	189	58581447	-	XOO1824	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.