IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1494	 66.84	0	1724775..1725359	+	194	161899002	ruvA	XOO1661	-	Holliday junction DNA helicase motor protein
1495	 64.31	0	1725559..1727466	+	635	58581285	kup	XOO1662	-	potassium uptake protein
1496	 65.90	0	1727595..1728632	+	345	58581286	ruvB	XOO1663	-	Holliday junction DNA helicase B
1497	 63.18	0	1728685..1729143	+	152	58581287	-	XOO1664	-	hypothetical protein
1498	 63.46	0	1729155..1729934	+	259	58581288	tolQ	XOO1665	-	hypothetical protein
1499	 64.09	0	1729959..1730540	+	193	58581289	tolR	XOO1666	-	hypothetical protein
1500	 67.24	0	1730530..1731570	+	346	58581290	tolA	XOO1667	-	hypothetical protein
1501	 64.72	0	1731764..1733149	+	461	58581291	tolB	XOO1668	-	translocation protein TolB
1502	 62.45	0	1733180..1733725	+	181	58581292	ompP6	XOO1669	-	outer membrane protein P6 precursor
1503	 62.15	0	1733732..1734550	+	272	58581293	-	XOO1670	-	hypothetical protein
1504	 63.03	0	1734644..1735276	+	210	58581294	-	XOO1671	-	radical activating enzyme
1505	 63.11	0	1735396..1736631	+	411	58581296	-	XOO1673	-	transposase
1506	 63.03	0	1736713..1737948	+	411	58581298	-	XOO1675	-	transposase
1507	 54.81	-2	1738343..1738789	-	148	58581300	-	XOO1677	-	transposase
1508	 64.63	0	1738829..1740205	-	458	122879125	-	XOO1678	-	IS1478 transposase
1509	 66.22	0	1740584..1741258	+	224	58581302	exsB	XOO1679	-	transcriptional regulator
1510	 61.52	0	1741503..1742687	-	394	58581303	int	XOO1680	-	phage-related integrase
1511	 62.45	0	1742687..1742947	-	86	58581304	-	XOO1681	-	hypothetical protein
1512	 60.87	0	1743619..1743894	-	91	58581305	-	XOO1682	-	hypothetical protein
1513	 64.23	0	1744056..1744466	-	136	58581306	-	XOO1683	-	hypothetical protein
1514	 58.78	-1	1744692..1744970	-	92	58581307	-	XOO1684	-	hypothetical protein
1515	 62.55	0	1745494..1748190	-	898	58581308	-	XOO1685	-	hypothetical protein
1516	 66.67	0	1748200..1748412	-	70	58581309	-	XOO1686	-	hypothetical protein
1517	 59.94	-1	1748698..1749024	-	108	58581310	-	XOO1687	-	hypothetical protein
1518	 57.08	-1	1749350..1749787	+	145	58581311	-	XOO1688	-	hypothetical protein
1519	 62.01	0	1750448..1751434	-	328	58581312	-	XOO1689	-	phage-related tail protein
1520	 64.43	0	1751431..1751832	-	133	58581313	-	XOO1690	-	phage-related tail protein
1521	 68.30	+1	1751845..1754715	-	956	58581314	-	XOO1691	-	phage-related tail protein
1522	 65.79	0	1754748..1754861	-	37	58581315	-	XOO1692	-	hypothetical protein
1523	 64.03	0	1754870..1755172	-	100	58581316	-	XOO1693	-	phage-related tail protein
1524	 62.16	0	1755218..1755727	-	169	58581317	-	XOO1694	-	phage-related tail protein
1525	 63.84	0	1755758..1756924	-	388	58581318	-	XOO1695	-	phage-related tail protein
1526	 68.89	+1	1756936..1757295	-	119	58581319	-	XOO1696	-	phage-related baseplate protein
1527	 65.43	0	1757292..1757855	-	187	58581320	-	XOO1697	-	phage-related baseplate protein
1528	 66.67	0	1757916..1758290	-	124	121632082	-	XOO4779	-	hypothetical protein
1529	 63.81	0	1758502..1760007	-	501	58581321	-	XOO1698	-	hypothetical protein
1530	 67.02	0	1760017..1760586	-	189	58581322	-	XOO1699	-	phage-related tail protein
1531	 63.52	0	1760555..1761508	-	317	58581323	-	XOO1700	-	phage-related baseplate assembly protein
1532	 45.67	-2	1761576..1762418	-	280	58581324	-	XOO1701	-	hypothetical protein
1533	 63.98	0	1763236..1763682	-	148	58581325	-	XOO1702	-	phage-related tail protein
1534	 63.58	0	1763670..1764122	-	150	58581326	-	XOO1703	-	phage-related tail protein
1535	 68.30	+1	1764086..1764574	-	162	58581327	-	XOO1704	-	hypothetical protein
1536	 66.51	0	1764574..1765215	-	213	58581328	lys	XOO1705	-	phage-related lytic enzyme
1537	 68.73	+1	1765212..1765502	-	96	58581329	-	XOO1706	-	hypothetical protein
1538	 64.99	0	1765480..1765836	-	118	58581330	-	XOO1707	-	hypothetical protein
1539	 68.57	+1	1765841..1766050	-	69	58581331	-	XOO1708	-	phage-related tail protein
1540	 69.05	+1	1766050..1766427	-	125	58581332	-	XOO1709	-	phage-related capsid completion protein
1541	 69.86	+1	1766617..1767336	-	239	58581333	-	XOO1710	-	phage-related terminase
1542	 64.41	0	1767340..1768356	-	338	58581335	-	XOO1712	-	phage-related major capsid protein
1543	 63.82	0	1768403..1769245	-	280	58581336	-	XOO1713	-	phage-related capsid scaffold protein
1544	 62.41	0	1769367..1771151	+	594	58581337	-	XOO1714	-	phage-related terminase
1545	 65.79	0	1771148..1772173	+	341	58581338	-	XOO1715	-	phage-related capsid packaging protein
1546	 67.52	+1	1772362..1773063	+	233	122879126	-	XOO1717	-	site-specific DNA-methyltransferase
1547	 61.47	0	1774916..1775473	-	185	58581341	-	XOO1718	-	hypothetical protein
1548	 67.96	+1	1776880..1777809	+	309	122879127	-	XOO1719	-	hypothetical protein
1549	 62.34	0	1777915..1780641	+	908	58581343	-	XOO1720	-	hypothetical protein
1550	 68.16	+1	1781422..1781955	+	177	121632083	-	XOO4780	-	hypothetical protein
1551	 60.65	0	1782622..1783053	-	143	58581344	-	XOO1721	-	response regulator
1552	 64.89	0	1783105..1783611	-	168	58581345	-	XOO1722	-	hypothetical protein
1553	 65.00	0	1783741..1785537	-	598	58581346	recQ	XOO1723	-	DNA helicase
1554	 62.96	0	1786095..1786688	-	197	58581347	-	XOO1724	-	DNA-binding related protein
1555	 66.45	0	1786742..1790863	+	1373	58581348	hrpA	XOO1725	-	ATP-dependent RNA helicase
1556	 61.85	0	1790787..1791929	+	380	58581349	-	XOO1726	-	putative transposase
1557	 60.66	0	1792164..1794878	-	904	58581350	fepA	XOO1727	-	TonB-dependent receptor
1558	 68.86	+1	1795230..1795502	-	90	58581352	glk	XOO1729	-	glucose kinase
1559	 64.05	0	1795582..1796001	-	139	58581353	glk	XOO1730	-	glucose kinase
1560	 64.49	0	1796302..1797957	-	551	58581354	-	XOO1731	-	hypothetical protein
1561	 62.84	0	1798245..1798766	-	173	58581355	-	XOO1732	-	hypothetical protein
1562	 67.88	+1	1798820..1800136	-	438	58581356	pqqE	XOO1733	-	pyrroloquinoline quinone biosynthesis protein PqqE
1563	 63.62	0	1800210..1800998	-	262	58581357	pqqC	XOO1734	-	pyrroloquinoline quinone biosynthesis protein PqqC
1564	 63.67	0	1800959..1801858	-	299	58581358	pqqG	XOO1735	-	pyrroloquinoline quinone biosynthesis protein PqqB
1565	 66.67	0	1802201..1804498	+	765	58581359	relA	XOO1736	-	ATP:GTP 3'-pyrophosphotranferase
1566	 70.37	+1	1804563..1806209	+	548	58581360	-	XOO1737	-	hypothetical protein
1567	 65.43	0	1806542..1808569	-	675	122879128	-	XOO1738	-	glycosyltransferase
1568	 67.77	+1	1808886..1811330	+	814	58581362	ponB	XOO1739	-	penicillin-binding protein 1B
1569	 69.83	+1	1811332..1811868	+	178	58581363	-	XOO1740	-	hypothetical protein
1570	 66.22	0	1812068..1814095	+	675	58581364	yoaA	XOO1741	-	ATP-dependent helicase
1571	 70.11	+1	1814016..1814828	+	270	58581365	-	XOO1742	-	hypothetical protein
1572	 67.98	+1	1814825..1815739	+	304	58581366	draG	XOO1743	-	dinitrogenase reductase activationg glycohydrolase
1573	 68.26	+1	1816033..1816908	-	291	58581367	tonB	XOO1744	-	TonB protein
1574	 67.80	+1	1816905..1817876	-	323	58581368	gshB	XOO1745	-	glutathione synthetase
1575	 54.73	-2	1818105..1818506	+	133	122879129	pilG	XOO1746	-	pilus protein
1576	 59.23	-1	1818524..1818886	+	120	58581370	pilH	XOO1747	-	PilH
1577	 63.86	0	1818883..1819416	+	177	58581371	pilI	XOO1748	-	pilus biogenesis protein
1578	 64.70	0	1819456..1821492	+	678	58581372	pilJ	XOO1749	-	pilus biogenesis protein
1579	 66.31	0	1826572..1828560	+	662	58581374	pilL	XOO1751	-	PilL
1580	 67.95	+1	1828526..1829770	+	414	58581375	-	XOO1752	-	hypothetical protein
1581	 64.78	0	1829804..1830280	+	158	58581376	-	XOO1753	-	hypothetical protein
1582	 65.06	0	1830531..1831154	+	207	58581377	rimJ	XOO1754	-	ribosomal protein alanine acetyltransferase
1583	 61.12	0	1831166..1832428	-	420	58581378	-	XOO1755	-	ISRSO5-transposase protein
1584	 67.82	+1	1833477..1833737	-	86	58581379	-	XOO1756	-	hypothetical protein
1585	 64.10	0	1833983..1835035	-	350	122879130	-	XOO1757	-	hypothetical protein
1586	 62.50	0	1835492..1835659	+	55	121632084	-	XOO4782	-	putative transposase
1587	 64.51	0	1836871..1837935	+	354	122879131	aspG	XOO1760	-	asparaginase
1588	 65.44	0	1837932..1838663	+	243	58581384	cutC	XOO1761	-	copper homeostasis protein
1589	 58.88	-1	1838688..1840241	-	517	122879132	-	XOO1762	-	leucin rich protein
1590	 65.31	0	1840788..1841891	-	367	58581386	-	XOO1763	-	hypothetical protein
1591	 61.24	0	1842394..1842780	-	128	58581387	-	XOO1764	-	transposase
1592	 65.77	0	1843972..1844082	-	36	58581390	-	XOO1767	-	hypothetical protein
1593	 66.25	0	1844913..1847321	+	802	122879133	-	XOO1768	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.