IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1493	 66.10	0	1724093..1724617	+	174	58581283	ruvC	XOO1660	-	Holliday junction resolvase
1494	 66.84	0	1724775..1725359	+	194	161899002	ruvA	XOO1661	-	Holliday junction DNA helicase motor protein
1495	 64.31	0	1725559..1727466	+	635	58581285	kup	XOO1662	-	potassium uptake protein
1496	 65.90	0	1727595..1728632	+	345	58581286	ruvB	XOO1663	-	Holliday junction DNA helicase B
1497	 63.18	0	1728685..1729143	+	152	58581287	-	XOO1664	-	hypothetical protein
1498	 63.46	0	1729155..1729934	+	259	58581288	tolQ	XOO1665	-	hypothetical protein
1499	 64.09	0	1729959..1730540	+	193	58581289	tolR	XOO1666	-	hypothetical protein
1500	 67.24	0	1730530..1731570	+	346	58581290	tolA	XOO1667	-	hypothetical protein
1501	 64.72	0	1731764..1733149	+	461	58581291	tolB	XOO1668	-	translocation protein TolB
1502	 62.45	0	1733180..1733725	+	181	58581292	ompP6	XOO1669	-	outer membrane protein P6 precursor
1503	 62.15	0	1733732..1734550	+	272	58581293	-	XOO1670	-	hypothetical protein
1504	 63.03	0	1734644..1735276	+	210	58581294	-	XOO1671	-	radical activating enzyme
1505	 63.11	0	1735396..1736631	+	411	58581296	-	XOO1673	-	transposase
1506	 63.03	0	1736713..1737948	+	411	58581298	-	XOO1675	-	transposase
1507	 54.81	-2	1738343..1738789	-	148	58581300	-	XOO1677	-	transposase
1508	 64.63	0	1738829..1740205	-	458	122879125	-	XOO1678	-	IS1478 transposase
1509	 66.22	0	1740584..1741258	+	224	58581302	exsB	XOO1679	-	transcriptional regulator
1510	 61.52	0	1741503..1742687	-	394	58581303	int	XOO1680	-	phage-related integrase
1511	 62.45	0	1742687..1742947	-	86	58581304	-	XOO1681	-	hypothetical protein
1512	 60.87	0	1743619..1743894	-	91	58581305	-	XOO1682	-	hypothetical protein
1513	 64.23	0	1744056..1744466	-	136	58581306	-	XOO1683	-	hypothetical protein
1514	 58.78	-1	1744692..1744970	-	92	58581307	-	XOO1684	-	hypothetical protein
1515	 62.55	0	1745494..1748190	-	898	58581308	-	XOO1685	-	hypothetical protein
1516	 66.67	0	1748200..1748412	-	70	58581309	-	XOO1686	-	hypothetical protein
1517	 59.94	-1	1748698..1749024	-	108	58581310	-	XOO1687	-	hypothetical protein
1518	 57.08	-1	1749350..1749787	+	145	58581311	-	XOO1688	-	hypothetical protein
1519	 62.01	0	1750448..1751434	-	328	58581312	-	XOO1689	-	phage-related tail protein
1520	 64.43	0	1751431..1751832	-	133	58581313	-	XOO1690	-	phage-related tail protein
1521	 68.30	+1	1751845..1754715	-	956	58581314	-	XOO1691	-	phage-related tail protein
1522	 65.79	0	1754748..1754861	-	37	58581315	-	XOO1692	-	hypothetical protein
1523	 64.03	0	1754870..1755172	-	100	58581316	-	XOO1693	-	phage-related tail protein
1524	 62.16	0	1755218..1755727	-	169	58581317	-	XOO1694	-	phage-related tail protein
1525	 63.84	0	1755758..1756924	-	388	58581318	-	XOO1695	-	phage-related tail protein
1526	 68.89	+1	1756936..1757295	-	119	58581319	-	XOO1696	-	phage-related baseplate protein
1527	 65.43	0	1757292..1757855	-	187	58581320	-	XOO1697	-	phage-related baseplate protein
1528	 66.67	0	1757916..1758290	-	124	121632082	-	XOO4779	-	hypothetical protein
1529	 63.81	0	1758502..1760007	-	501	58581321	-	XOO1698	-	hypothetical protein
1530	 67.02	0	1760017..1760586	-	189	58581322	-	XOO1699	-	phage-related tail protein
1531	 63.52	0	1760555..1761508	-	317	58581323	-	XOO1700	-	phage-related baseplate assembly protein
1532	 45.67	-2	1761576..1762418	-	280	58581324	-	XOO1701	-	hypothetical protein
1533	 63.98	0	1763236..1763682	-	148	58581325	-	XOO1702	-	phage-related tail protein
1534	 63.58	0	1763670..1764122	-	150	58581326	-	XOO1703	-	phage-related tail protein
1535	 68.30	+1	1764086..1764574	-	162	58581327	-	XOO1704	-	hypothetical protein
1536	 66.51	0	1764574..1765215	-	213	58581328	lys	XOO1705	-	phage-related lytic enzyme
1537	 68.73	+1	1765212..1765502	-	96	58581329	-	XOO1706	-	hypothetical protein
1538	 64.99	0	1765480..1765836	-	118	58581330	-	XOO1707	-	hypothetical protein
1539	 68.57	+1	1765841..1766050	-	69	58581331	-	XOO1708	-	phage-related tail protein
1540	 69.05	+1	1766050..1766427	-	125	58581332	-	XOO1709	-	phage-related capsid completion protein
1541	 69.86	+1	1766617..1767336	-	239	58581333	-	XOO1710	-	phage-related terminase
1542	 64.41	0	1767340..1768356	-	338	58581335	-	XOO1712	-	phage-related major capsid protein
1543	 63.82	0	1768403..1769245	-	280	58581336	-	XOO1713	-	phage-related capsid scaffold protein
1544	 62.41	0	1769367..1771151	+	594	58581337	-	XOO1714	-	phage-related terminase
1545	 65.79	0	1771148..1772173	+	341	58581338	-	XOO1715	-	phage-related capsid packaging protein
1546	 67.52	+1	1772362..1773063	+	233	122879126	-	XOO1717	-	site-specific DNA-methyltransferase
1547	 61.47	0	1774916..1775473	-	185	58581341	-	XOO1718	-	hypothetical protein
1548	 67.96	+1	1776880..1777809	+	309	122879127	-	XOO1719	-	hypothetical protein
1549	 62.34	0	1777915..1780641	+	908	58581343	-	XOO1720	-	hypothetical protein
1550	 68.16	+1	1781422..1781955	+	177	121632083	-	XOO4780	-	hypothetical protein
1551	 60.65	0	1782622..1783053	-	143	58581344	-	XOO1721	-	response regulator
1552	 64.89	0	1783105..1783611	-	168	58581345	-	XOO1722	-	hypothetical protein
1553	 65.00	0	1783741..1785537	-	598	58581346	recQ	XOO1723	-	DNA helicase
1554	 62.96	0	1786095..1786688	-	197	58581347	-	XOO1724	-	DNA-binding related protein
1555	 66.45	0	1786742..1790863	+	1373	58581348	hrpA	XOO1725	-	ATP-dependent RNA helicase
1556	 61.85	0	1790787..1791929	+	380	58581349	-	XOO1726	-	putative transposase
1557	 60.66	0	1792164..1794878	-	904	58581350	fepA	XOO1727	-	TonB-dependent receptor
1558	 68.86	+1	1795230..1795502	-	90	58581352	glk	XOO1729	-	glucose kinase
1559	 64.05	0	1795582..1796001	-	139	58581353	glk	XOO1730	-	glucose kinase
1560	 64.49	0	1796302..1797957	-	551	58581354	-	XOO1731	-	hypothetical protein
1561	 62.84	0	1798245..1798766	-	173	58581355	-	XOO1732	-	hypothetical protein
1562	 67.88	+1	1798820..1800136	-	438	58581356	pqqE	XOO1733	-	pyrroloquinoline quinone biosynthesis protein PqqE
1563	 63.62	0	1800210..1800998	-	262	58581357	pqqC	XOO1734	-	pyrroloquinoline quinone biosynthesis protein PqqC
1564	 63.67	0	1800959..1801858	-	299	58581358	pqqG	XOO1735	-	pyrroloquinoline quinone biosynthesis protein PqqB
1565	 66.67	0	1802201..1804498	+	765	58581359	relA	XOO1736	-	ATP:GTP 3'-pyrophosphotranferase
1566	 70.37	+1	1804563..1806209	+	548	58581360	-	XOO1737	-	hypothetical protein
1567	 65.43	0	1806542..1808569	-	675	122879128	-	XOO1738	-	glycosyltransferase
1568	 67.77	+1	1808886..1811330	+	814	58581362	ponB	XOO1739	-	penicillin-binding protein 1B
1569	 69.83	+1	1811332..1811868	+	178	58581363	-	XOO1740	-	hypothetical protein
1570	 66.22	0	1812068..1814095	+	675	58581364	yoaA	XOO1741	-	ATP-dependent helicase
1571	 70.11	+1	1814016..1814828	+	270	58581365	-	XOO1742	-	hypothetical protein
1572	 67.98	+1	1814825..1815739	+	304	58581366	draG	XOO1743	-	dinitrogenase reductase activationg glycohydrolase
1573	 68.26	+1	1816033..1816908	-	291	58581367	tonB	XOO1744	-	TonB protein
1574	 67.80	+1	1816905..1817876	-	323	58581368	gshB	XOO1745	-	glutathione synthetase
1575	 54.73	-2	1818105..1818506	+	133	122879129	pilG	XOO1746	-	pilus protein
1576	 59.23	-1	1818524..18