IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1472	 63.93	0	1700857..1701843	+	328	58581263	-	XOO1640	-	IS1404 transposase
1473	 66.54	0	1701840..1703468	-	542	58581264	-	XOO1641	-	hypothetical protein
1474	 64.95	0	1703725..1706346	-	873	58581265	mutS	XOO1642	-	DNA mismatch repair protein
1475	 62.95	0	1707049..1707855	-	268	122879120	-	XOO1643	-	IS1404 transposase
1476	 58.52	-1	1707887..1708156	-	89	58581268	-	XOO1645	-	IS1404 transposase
1477	 64.40	0	1708175..1708615	+	146	58581269	-	XOO1646	-	putative ISXo8 transposase
1478	 58.77	-1	1708644..1708871	+	75	58581270	-	XOO1647	-	putative ISXo8 transposase
1479	 66.38	0	1709252..1710646	-	464	122879121	radA	XOO1648	-	DNA repair protein RadA
1480	 66.45	0	1709252..1710643	-	463	121632079	radA	XOO4776	-	DNA repair protein RadA
1481	 61.18	0	1710728..1711219	-	163	58581272	-	XOO1649	-	IS1404 transposase
1482	 65.03	0	1711042..1711713	-	223	58581273	-	XOO1650	-	IS1404 transposase
1483	 60.23	-1	1711566..1711829	-	87	121632080	-	XOO4777	-	IS1404 transposase
1484	 64.61	0	1712034..1713590	+	518	121632081	-	XOO4778	-	hypothetical protein
1485	 68.40	+1	1713854..1715005	-	383	58581274	plcN	XOO1651	-	phospholipase C
1486	 66.02	0	1716174..1717412	-	412	122879122	ycaD	XOO1653	-	transmembrane transport protein
1487	 66.45	0	1717679..1718146	+	155	58581277	-	XOO1654	-	hypothetical protein
1488	 69.76	+1	1718644..1719420	-	258	58581278	-	XOO1655	-	hypothetical protein
1489	 65.04	0	1719500..1721344	+	614	58581279	aspS	XOO1656	-	aspartyl-tRNA synthetase
1490	 63.83	0	1721856..1722383	+	175	122879123	-	XOO1657	-	acetyltransferase
1491	 71.50	+2	1722561..1723160	+	199	122879124	-	XOO1658	-	hypothetical protein
1492	 66.39	0	1723250..1723978	+	242	58581282	-	XOO1659	-	hypothetical protein
1493	 66.10	0	1724093..1724617	+	174	58581283	ruvC	XOO1660	-	Holliday junction resolvase
1494	 66.84	0	1724775..1725359	+	194	161899002	ruvA	XOO1661	-	Holliday junction DNA helicase motor protein
1495	 64.31	0	1725559..1727466	+	635	58581285	kup	XOO1662	-	potassium uptake protein
1496	 65.90	0	1727595..1728632	+	345	58581286	ruvB	XOO1663	-	Holliday junction DNA helicase B
1497	 63.18	0	1728685..1729143	+	152	58581287	-	XOO1664	-	hypothetical protein
1498	 63.46	0	1729155..1729934	+	259	58581288	tolQ	XOO1665	-	hypothetical protein
1499	 64.09	0	1729959..1730540	+	193	58581289	tolR	XOO1666	-	hypothetical protein
1500	 67.24	0	1730530..1731570	+	346	58581290	tolA	XOO1667	-	hypothetical protein
1501	 64.72	0	1731764..1733149	+	461	58581291	tolB	XOO1668	-	translocation protein TolB
1502	 62.45	0	1733180..1733725	+	181	58581292	ompP6	XOO1669	-	outer membrane protein P6 precursor
1503	 62.15	0	1733732..1734550	+	272	58581293	-	XOO1670	-	hypothetical protein
1504	 63.03	0	1734644..1735276	+	210	58581294	-	XOO1671	-	radical activating enzyme
1505	 63.11	0	1735396..1736631	+	411	58581296	-	XOO1673	-	transposase
1506	 63.03	0	1736713..1737948	+	411	58581298	-	XOO1675	-	transposase
1507	 54.81	-2	1738343..1738789	-	148	58581300	-	XOO1677	-	transposase
1508	 64.63	0	1738829..1740205	-	458	122879125	-	XOO1678	-	IS1478 transposase
1509	 66.22	0	1740584..1741258	+	224	58581302	exsB	XOO1679	-	transcriptional regulator
1510	 61.52	0	1741503..1742687	-	394	58581303	int	XOO1680	-	phage-related integrase
1511	 62.45	0	1742687..1742947	-	86	58581304	-	XOO1681	-	hypothetical protein
1512	 60.87	0	1743619..1743894	-	91	58581305	-	XOO1682	-	hypothetical protein
1513	 64.23	0	1744056..1744466	-	136	58581306	-	XOO1683	-	hypothetical protein
1514	 58.78	-1	1744692..1744970	-	92	58581307	-	XOO1684	-	hypothetical protein
1515	 62.55	0	1745494..1748190	-	898	58581308	-	XOO1685	-	hypothetical protein
1516	 66.67	0	1748200..1748412	-	70	58581309	-	XOO1686	-	hypothetical protein
1517	 59.94	-1	1748698..1749024	-	108	58581310	-	XOO1687	-	hypothetical protein
1518	 57.08	-1	1749350..1749787	+	145	58581311	-	XOO1688	-	hypothetical protein
1519	 62.01	0	1750448..1751434	-	328	58581312	-	XOO1689	-	phage-related tail protein
1520	 64.43	0	1751431..1751832	-	133	58581313	-	XOO1690	-	phage-related tail protein
1521	 68.30	+1	1751845..1754715	-	956	58581314	-	XOO1691	-	phage-related tail protein
1522	 65.79	0	1754748..1754861	-	37	58581315	-	XOO1692	-	hypothetical protein
1523	 64.03	0	1754870..1755172	-	100	58581316	-	XOO1693	-	phage-related tail protein
1524	 62.16	0	1755218..1755727	-	169	58581317	-	XOO1694	-	phage-related tail protein
1525	 63.84	0	1755758..1756924	-	388	58581318	-	XOO1695	-	phage-related tail protein
1526	 68.89	+1	1756936..1757295	-	119	58581319	-	XOO1696	-	phage-related baseplate protein
1527	 65.43	0	1757292..1757855	-	187	58581320	-	XOO1697	-	phage-related baseplate protein
1528	 66.67	0	1757916..1758290	-	124	121632082	-	XOO4779	-	hypothetical protein
1529	 63.81	0	1758502..1760007	-	501	58581321	-	XOO1698	-	hypothetical protein
1530	 67.02	0	1760017..1760586	-	189	58581322	-	XOO1699	-	phage-related tail protein
1531	 63.52	0	1760555..1761508	-	317	58581323	-	XOO1700	-	phage-related baseplate assembly protein
1532	 45.67	-2	1761576..1762418	-	280	58581324	-	XOO1701	-	hypothetical protein
1533	 63.98	0	1763236..1763682	-	148	58581325	-	XOO1702	-	phage-related tail protein
1534	 63.58	0	1763670..1764122	-	150	58581326	-	XOO1703	-	phage-related tail protein
1535	 68.30	+1	1764086..1764574	-	162	58581327	-	XOO1704	-	hypothetical protein
1536	 66.51	0	1764574..1765215	-	213	58581328	lys	XOO1705	-	phage-related lytic enzyme
1537	 68.73	+1	1765212..1765502	-	96	58581329	-	XOO1706	-	hypothetical protein
1538	 64.99	0	1765480..1765836	-	118	58581330	-	XOO1707	-	hypothetical protein
1539	 68.57	+1	1765841..1766050	-	69	58581331	-	XOO1708	-	phage-related tail protein
1540	 69.05	+1	1766050..1766427	-	125	58581332	-	XOO1709	-	phage-related capsid completion protein
1541	 69.86	+1	1766617..1767336	-	239	58581333	-	XOO1710	-	phage-related terminase
1542	 64.41	0	1767340..1768356	-	338	58581335	-	XOO1712	-	phage-related major capsid protein
1543	 63.82	0	1768403..1769245	-	280	58581336	-	XOO1713	-	phage-related capsid scaffold protein
1544	 62.41	0	1769367..1771151	+	594	58581337	-	XOO1714	-	phage-related terminase
1545	 65.79	0	1771148..1772173	+	341	58581338	-	XOO1715	-	phage-related capsid packaging protein
1546	 67.52	+1	1772362..1773063	+	233	122879126	-	XOO1717	-	site-specific DNA-methyltransferase
1547	 61.47	0	1774916..1775473	-	185	58581341	-	XOO1718	-	hypothetical protein
1548	 67.96	+1	1776880..1777809	+	309	122879127	-	XOO1719	-	hypothetical protein
1549	 62.34	0	1777915..1780641	+	908	58581343	-	XOO1720	-	hypothetical protein
1550	 68.16	+1	1781422..1781955	+	177	121632083	-	XOO4780	-	hypothetical protein
1551	 60.65	0	1782622..1783053	-	143	58581344	-	XOO1721	-	response regulator
1552	 64.89	0	1783105..1783611	-	168	58581345	-	XOO1722	-	hypothetical protein
1553	 65.00	0	1783741..1785537	-	598	58581346	recQ	XOO1723	-	DNA helicase
1554	 62.96	0	1786095..1786688	-	197	58581347	-	XOO1724	-	DNA-binding related protein
1555	 66.45	0	1786742..1790863	+	1373	58581348	hrpA	XOO1725	-	ATP-dependent RNA helicase
1556	 61.85	0	1790787..1791929	+	380	58581349	-	XOO1726	-	putative transposase
1557	 60.66	0	1792164..1794878	-	904	58581350	fepA	XOO1727	-	TonB-dependent receptor
1558	 68.86	+1	1795230..1795502	-	90	58581352	glk	XOO1729	-	glucose kinase
1559	 64.05	0	1795582..1796001	-	139	58581353	glk	XOO1730	-	glucose kinase
1560	 64.49	0	1796302..1797957	-	551	58581354	-	XOO1731	-	hypothetical protein
1561	 62.84	0	1798245..1798766	-	173	58581355	-	XOO1732	-	hypothetical protein
1562	 67.88	+1	1798820..1800136	-	438	58581356	pqqE	XOO1733	-	pyrroloquinoline quinone biosynthesis protein PqqE
1563	 63.62	0	1800210..1800998	-	262	58581357	pqqC	XOO1734	-	pyrroloquinoline quinone biosynthesis protein PqqC
1564	 63.67	0	1800959..1801858	-	299	58581358	pqqG	XOO1735	-	pyrroloquinoline quinone biosynthesis protein PqqB
1565	 66.67	0	1802201..1804498	+	765	58581359	relA	XOO1736	-	ATP:GTP 3'-pyrophosphotranferase
1566	 70.37	+1	1804563..1806209	+	548	58581360	-	XOO1737	-	hypothetical protein
1567	 65.43	0	1806542..1808569	-	675	122879128	-	XOO1738	-	glycosyltransferase
1568	 67.77	+1	1808886..1811330	+	814	58581362	ponB	XOO1739	-	penicillin-binding protein 1B
1569	 69.83	+1	1811332..1811868	+	178	58581363	-	XOO1740	-	hypothetical protein
1570	 66.22	0	1812068..1814095	+	675	58581364	yoaA	XOO1741	-	ATP-dependent helicase
1571	 70.11	+1	1814016..1814828	+	270	58581365	-	XOO1742	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.