IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1441	 65.56	0	1655332..1656594	-	420	58581232	-	XOO1609	-	hypothetical protein
1442	 65.61	0	1656617..1657372	-	251	161899004	ate1	XOO1611	-	arginyl-tRNA-protein transferase
1443	 66.49	0	1657592..1658173	+	193	122879117	-	XOO1610	-	hypothetical protein
1444	 55.14	-2	1658307..1658792	-	161	58581235	-	XOO1612	-	hypothetical protein
1445	 66.79	0	1659017..1659796	-	259	58581236	rfaY	XOO1613	-	RNA polymerase sigma factor
1446	 65.56	0	1659872..1660414	-	180	58581237	pthX	XOO1614	-	pathogenicity-related protein
1447	 65.59	0	1660603..1661628	-	341	58581238	tesB	XOO1615	-	acyl-CoA thiolesterase II
1448	 69.26	+1	1661579..1662349	-	256	58581239	-	XOO1616	-	hypothetical protein
1449	 63.66	0	1662373..1662837	+	154	58581240	-	XOO1617	-	hypothetical protein
1450	 61.73	0	1662951..1663355	-	134	58581241	-	XOO1618	-	hypothetical protein
1451	 60.75	0	1666618..1666938	+	106	58581243	rplU	XOO1620	-	50S ribosomal protein L21
1452	 62.45	0	1666951..1667211	+	86	58581244	rpmA	XOO1621	-	50S ribosomal protein L27
1453	 65.05	0	1667444..1668496	+	350	58581245	obgE	XOO1622	-	GTPase ObgE
1454	 60.37	0	1668588..1668857	-	89	58581246	rpsT	XOO1623	-	30S ribosomal protein S20
1455	 64.38	0	1668959..1670578	+	539	58581247	mviN	XOO1624	-	virulence factor
1456	 65.33	0	1670597..1671793	+	398	58581248	ribF	XOO1625	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1457	 65.32	0	1671800..1674631	+	943	58581249	ileS	XOO1626	-	isoleucyl-tRNA synthetase
1458	 63.45	0	1674826..1675446	+	206	58581250	lspA	XOO1627	-	lipoprotein signal peptidase
1459	 65.51	0	1675535..1676485	+	316	161899003	ispH	XOO1628	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1460	 59.19	-1	1676999..1677934	+	311	122879118	cyoA	XOO1629	-	cytochrome O ubiquinol oxidase subunit II
1461	 60.53	0	1677913..1679934	+	673	58581253	cyoB	XOO1630	-	cytochrome O ubiquinol oxidase subunit I
1462	 61.77	0	1679931..1680563	+	210	58581254	cyoC	XOO1631	-	cytochrome O ubiquinol oxidase subunit III
1463	 59.23	-1	1680563..1680898	+	111	58581255	cyoD	XOO1632	-	cytochrome O ubiquinol oxidase subunit IV
1464	 62.25	0	1681248..1682945	+	565	122879119	-	XOO1633	-	hypothetical protein
1465	 60.37	0	1683146..1685416	+	756	58581257	vrgS	XOO1634	-	hypothetical protein
1466	 65.33	0	1685410..1687059	+	549	58581258	-	XOO1635	-	hypothetical protein
1467	 63.99	0	1687203..1691342	+	1379	58581259	-	XOO1636	-	hypothetical protein
1468	 65.51	0	1691386..1692423	+	345	58581260	-	XOO1637	-	putative transposase
1469	 63.04	0	1693525..1696419	+	964	58581261	-	XOO1638	-	hypothetical protein
1470	 63.57	0	1697689..1697817	+	42	121632078	-	XOO4774	-	hypothetical protein
1471	 66.73	0	1697836..1700841	+	1001	58581262	-	XOO1639	-	hypothetical protein
1472	 63.93	0	1700857..1701843	+	328	58581263	-	XOO1640	-	IS1404 transposase
1473	 66.54	0	1701840..1703468	-	542	58581264	-	XOO1641	-	hypothetical protein
1474	 64.95	0	1703725..1706346	-	873	58581265	mutS	XOO1642	-	DNA mismatch repair protein
1475	 62.95	0	1707049..1707855	-	268	122879120	-	XOO1643	-	IS1404 transposase
1476	 58.52	-1	1707887..1708156	-	89	58581268	-	XOO1645	-	IS1404 transposase
1477	 64.40	0	1708175..1708615	+	146	58581269	-	XOO1646	-	putative ISXo8 transposase
1478	 58.77	-1	1708644..1708871	+	75	58581270	-	XOO1647	-	putative ISXo8 transposase
1479	 66.38	0	1709252..1710646	-	464	122879121	radA	XOO1648	-	DNA repair protein RadA
1480	 66.45	0	1709252..1710643	-	463	121632079	radA	XOO4776	-	DNA repair protein RadA
1481	 61.18	0	1710728..1711219	-	163	58581272	-	XOO1649	-	IS1404 transposase
1482	 65.03	0	1711042..1711713	-	223	58581273	-	XOO1650	-	IS1404 transposase
1483	 60.23	-1	1711566..1711829	-	87	121632080	-	XOO4777	-	IS1404 transposase
1484	 64.61	0	1712034..1713590	+	518	121632081	-	XOO4778	-	hypothetical protein
1485	 68.40	+1	1713854..1715005	-	383	58581274	plcN	XOO1651	-	phospholipase C
1486	 66.02	0	1716174..1717412	-	412	122879122	ycaD	XOO1653	-	transmembrane transport protein
1487	 66.45	0	1717679..1718146	+	155	58581277	-	XOO1654	-	hypothetical protein
1488	 69.76	+1	1718644..1719420	-	258	58581278	-	XOO1655	-	hypothetical protein
1489	 65.04	0	1719500..1721344	+	614	58581279	aspS	XOO1656	-	aspartyl-tRNA synthetase
1490	 63.83	0	1721856..1722383	+	175	122879123	-	XOO1657	-	acetyltransferase
1491	 71.50	+2	1722561..1723160	+	199	122879124	-	XOO1658	-	hypothetical protein
1492	 66.39	0	1723250..1723978	+	242	58581282	-	XOO1659	-	hypothetical protein
1493	 66.10	0	1724093..1724617	+	174	58581283	ruvC	XOO1660	-	Holliday junction resolvase
1494	 66.84	0	1724775..1725359	+	194	161899002	ruvA	XOO1661	-	Holliday junction DNA helicase motor protein
1495	 64.31	0	1725559..1727466	+	635	58581285	kup	XOO1662	-	potassium uptake protein
1496	 65.90	0	1727595..1728632	+	345	58581286	ruvB	XOO1663	-	Holliday junction DNA helicase B
1497	 63.18	0	1728685..1729143	+	152	58581287	-	XOO1664	-	hypothetical protein
1498	 63.46	0	1729155..1729934	+	259	58581288	tolQ	XOO1665	-	hypothetical protein
1499	 64.09	0	1729959..1730540	+	193	58581289	tolR	XOO1666	-	hypothetical protein
1500	 67.24	0	1730530..1731570	+	346	58581290	tolA	XOO1667	-	hypothetical protein
1501	 64.72	0	1731764..1733149	+	461	58581291	tolB	XOO1668	-	translocation protein TolB
1502	 62.45	0	1733180..1733725	+	181	58581292	ompP6	XOO1669	-	outer membrane protein P6 precursor
1503	 62.15	0	1733732..1734550	+	272	58581293	-	XOO1670	-	hypothetical protein
1504	 63.03	0	1734644..1735276	+	210	58581294	-	XOO1671	-	radical activating enzyme
1505	 63.11	0	1735396..1736631	+	411	58581296	-	XOO1673	-	transposase
1506	 63.03	0	1736713..1737948	+	411	58581298	-	XOO1675	-	transposase
1507	 54.81	-2	1738343..1738789	-	148	58581300	-	XOO1677	-	transposase
1508	 64.63	0	1738829..1740205	-	458	122879125	-	XOO1678	-	IS1478 transposase
1509	 66.22	0	1740584..1741258	+	224	58581302	exsB	XOO1679	-	transcriptional regulator
1510	 61.52	0	1741503..1742687	-	394	58581303	int	XOO1680	-	phage-related integrase
1511	 62.45	0	1742687..1742947	-	86	58581304	-	XOO1681	-	hypothetical protein
1512	 60.87	0	1743619..1743894	-	91	58581305	-	XOO1682	-	hypothetical protein
1513	 64.23	0	1744056..1744466	-	136	58581306	-	XOO1683	-	hypothetical protein
1514	 58.78	-1	1744692..1744970	-	92	58581307	-	XOO1684	-	hypothetical protein
1515	 62.55	0	1745494..1748190	-	898	58581308	-	XOO1685	-	hypothetical protein
1516	 66.67	0	1748200..1748412	-	70	58581309	-	XOO1686	-	hypothetical protein
1517	 59.94	-1	1748698..1749024	-	108	58581310	-	XOO1687	-	hypothetical protein
1518	 57.08	-1	1749350..1749787	+	145	58581311	-	XOO1688	-	hypothetical protein
1519	 62.01	0	1750448..1751434	-	328	58581312	-	XOO1689	-	phage-related tail protein
1520	 64.43	0	1751431..1751832	-	133	58581313	-	XOO1690	-	phage-related tail protein
1521	 68.30	+1	1751845..1754715	-	956	58581314	-	XOO1691	-	phage-related tail protein
1522	 65.79	0	1754748..1754861	-	37	58581315	-	XOO1692	-	hypothetical protein
1523	 64.03	0	1754870..1755172	-	100	58581316	-	XOO1693	-	phage-related tail protein
1524	 62.16	0	1755218..1755727	-	169