IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1429	 70.76	+1	1641462..1642268	+	268	58581221	-	XOO1598	-	hypothetical protein
1430	 64.50	0	1642289..1642795	+	168	122879115	-	XOO1599	-	hypothetical protein
1431	 64.04	0	1642770..1643150	+	126	58581223	-	XOO1600	-	hypothetical protein
1432	 59.80	-1	1643074..1643175	+	33	121632077	-	XOO4771	-	hypothetical protein
1433	 60.53	0	1643400..1644767	-	455	58581224	ostA	XOO1601	-	trehalose-6-phosphate synthase
1434	 62.24	0	1644764..1646617	-	617	58581225	-	XOO1602	-	hypothetical protein
1435	 66.67	0	1646587..1647351	-	254	58581226	ostB	XOO1603	-	trehalose-6-phosphate phosphatase
1436	 64.46	0	1648663..1651197	-	844	58581227	bfeA	XOO1604	-	ferric enterobactin receptor
1437	 67.61	+1	1651280..1651807	+	175	58581228	-	XOO1605	-	hypothetical protein
1438	 62.90	0	1651903..1653150	-	415	58581229	-	XOO1606	-	hypothetical protein
1439	 66.54	0	1653426..1655027	+	533	122879116	-	XOO1607	-	hypothetical protein
1440	 55.10	-2	1655179..1655325	+	48	58581231	-	XOO1608	-	transposase
1441	 65.56	0	1655332..1656594	-	420	58581232	-	XOO1609	-	hypothetical protein
1442	 65.61	0	1656617..1657372	-	251	161899004	ate1	XOO1611	-	arginyl-tRNA-protein transferase
1443	 66.49	0	1657592..1658173	+	193	122879117	-	XOO1610	-	hypothetical protein
1444	 55.14	-2	1658307..1658792	-	161	58581235	-	XOO1612	-	hypothetical protein
1445	 66.79	0	1659017..1659796	-	259	58581236	rfaY	XOO1613	-	RNA polymerase sigma factor
1446	 65.56	0	1659872..1660414	-	180	58581237	pthX	XOO1614	-	pathogenicity-related protein
1447	 65.59	0	1660603..1661628	-	341	58581238	tesB	XOO1615	-	acyl-CoA thiolesterase II
1448	 69.26	+1	1661579..1662349	-	256	58581239	-	XOO1616	-	hypothetical protein
1449	 63.66	0	1662373..1662837	+	154	58581240	-	XOO1617	-	hypothetical protein
1450	 61.73	0	1662951..1663355	-	134	58581241	-	XOO1618	-	hypothetical protein
1451	 60.75	0	1666618..1666938	+	106	58581243	rplU	XOO1620	-	50S ribosomal protein L21
1452	 62.45	0	1666951..1667211	+	86	58581244	rpmA	XOO1621	-	50S ribosomal protein L27
1453	 65.05	0	1667444..1668496	+	350	58581245	obgE	XOO1622	-	GTPase ObgE
1454	 60.37	0	1668588..1668857	-	89	58581246	rpsT	XOO1623	-	30S ribosomal protein S20
1455	 64.38	0	1668959..1670578	+	539	58581247	mviN	XOO1624	-	virulence factor
1456	 65.33	0	1670597..1671793	+	398	58581248	ribF	XOO1625	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1457	 65.32	0	1671800..1674631	+	943	58581249	ileS	XOO1626	-	isoleucyl-tRNA synthetase
1458	 63.45	0	1674826..1675446	+	206	58581250	lspA	XOO1627	-	lipoprotein signal peptidase
1459	 65.51	0	1675535..1676485	+	316	161899003	ispH	XOO1628	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1460	 59.19	-1	1676999..1677934	+	311	122879118	cyoA	XOO1629	-	cytochrome O ubiquinol oxidase subunit II
1461	 60.53	0	1677913..1679934	+	673	58581253	cyoB	XOO1630	-	cytochrome O ubiquinol oxidase subunit I
1462	 61.77	0	1679931..1680563	+	210	58581254	cyoC	XOO1631	-	cytochrome O ubiquinol oxidase subunit III
1463	 59.23	-1	1680563..1680898	+	111	58581255	cyoD	XOO1632	-	cytochrome O ubiquinol oxidase subunit IV
1464	 62.25	0	1681248..1682945	+	565	122879119	-	XOO1633	-	hypothetical protein
1465	 60.37	0	1683146..1685416	+	756	58581257	vrgS	XOO1634	-	hypothetical protein
1466	 65.33	0	1685410..1687059	+	549	58581258	-	XOO1635	-	hypothetical protein
1467	 63.99	0	1687203..1691342	+	1379	58581259	-	XOO1636	-	hypothetical protein
1468	 65.51	0	1691386..1692423	+	345	58581260	-	XOO1637	-	putative transposase
1469	 63.04	0	1693525..1696419	+	964	58581261	-	XOO1638	-	hypothetical protein
1470	 63.57	0	1697689..1697817	+	42	121632078	-	XOO4774	-	hypothetical protein
1471	 66.73	0	1697836..1700841	+	1001	58581262	-	XOO1639	-	hypothetical protein
1472	 63.93	0	1700857..1701843	+	328	58581263	-	XOO1640	-	IS1404 transposase
1473	 66.54	0	1701840..1703468	-	542	58581264	-	XOO1641	-	hypothetical protein
1474	 64.95	0	1703725..1706346	-	873	58581265	mutS	XOO1642	-	DNA mismatch repair protein
1475	 62.95	0	1707049..1707855	-	268	122879120	-	XOO1643	-	IS1404 transposase
1476	 58.52	-1	1707887..1708156	-	89	58581268	-	XOO1645	-	IS1404 transposase
1477	 64.40	0	1708175..1708615	+	146	58581269	-	XOO1646	-	putative ISXo8 transposase
1478	 58.77	-1	1708644..1708871	+	75	58581270	-	XOO1647	-	putative ISXo8 transposase
1479	 66.38	0	1709252..1710646	-	464	122879121	radA	XOO1648	-	DNA repair protein RadA
1480	 66.45	0	1709252..1710643	-	463	121632079	radA	XOO4776	-	DNA repair protein RadA
1481	 61.18	0	1710728..1711219	-	163	58581272	-	XOO1649	-	IS1404 transposase
1482	 65.03	0	1711042..1711713	-	223	58581273	-	XOO1650	-	IS1404 transposase
1483	 60.23	-1	1711566..1711829	-	87	121632080	-	XOO4777	-	IS1404 transposase
1484	 64.61	0	1712034..1713590	+	518	121632081	-	XOO4778	-	hypothetical protein
1485	 68.40	+1	1713854..1715005	-	383	58581274	plcN	XOO1651	-	phospholipase C
1486	 66.02	0	1716174..1717412	-	412	122879122	ycaD	XOO1653	-	transmembrane transport protein
1487	 66.45	0	1717679..1718146	+	155	58581277	-	XOO1654	-	hypothetical protein
1488	 69.76	+1	1718644..1719420	-	258	58581278	-	XOO1655	-	hypothetical protein
1489	 65.04	0	1719500..1721344	+	614	58581279	aspS	XOO1656	-	aspartyl-tRNA synthetase
1490	 63.83	0	1721856..1722383	+	175	122879123	-	XOO1657	-	acetyltransferase
1491	 71.50	+2	1722561..1723160	+	199	122879124	-	XOO1658	-	hypothetical protein
1492	 66.39	0	1723250..1723978	+	242	58581282	-	XOO1659	-	hypothetical protein
1493	 66.10	0	1724093..1724617	+	174	58581283	ruvC	XOO1660	-	Holliday junction resolvase
1494	 66.84	0	1724775..1725359	+	194	161899002	ruvA	XOO1661	-	Holliday junction DNA helicase motor protein
1495	 64.31	0	1725559..1727466	+	635	58581285	kup	XOO1662	-	potassium uptake protein
1496	 65.90	0	1727595..1728632	+	345	58581286	ruvB	XOO1663	-	Holliday junction DNA helicase B
1497	 63.18	0	1728685..1729143	+	152	58581287	-	XOO1664	-	hypothetical protein
1498	 63.46	0	1729155..1729934	+	259	58581288	tolQ	XOO1665	-	hypothetical protein
1499	 64.09	0	1729959..1730540	+	193	58581289	tolR	XOO1666	-	hypothetical protein
1500	 67.24	0	1730530..1731570	+	346	58581290	tolA	XOO1667	-	hypothetical protein
1501	 64.72	0	1731764..1733149	+	461	58581291	tolB	XOO1668	-	translocation protein TolB
1502	 62.45	0	1733180..1733725	+	181	58581292	ompP6	XOO1669	-	outer membrane protein P6 precursor
1503	 62.15	0	1733732..1734550	+	272	58581293	-	XOO1670	-	hypothetical protein
1504	 63.03	0	1734644..1735276	+	210	58581294	-	XOO1671	-	radical activating enzyme
1505	 63.11	0	1735396..1736631	+	411	58581296	-	XOO1673	-	transposase
1506	 63.03	0	1736713..1737948	+	411	58581298	-	XOO1675	-	transposase
1507	 54.81	-2	1738343..1738789	-	148	58581300	-	XOO1677	-	transposase
1508	 64.63	0	1738829..1740205	-	458	122879125	-	XOO1678	-	IS1478 transposase
1509	 66.22	0	1740584..1741258	+	224	58581302	exsB	XOO1679	-	transcriptional regulator
1510	 61.52	0	1741503..1742687	-	394	58581303	int	XOO1680	-	phage-related integrase
1511	 62.45	0	1742687..1742947	-	86	58581304	-	XOO1681	-	hypothetical protein
1512	 60.87	0	1743619..1743894	-	91	58581305	-	XOO1682	-	hypothetical protein
1513	 64.23	0	1744056..1744466	-	136	58581306	-	XOO1683	-	hypothetical protein
1514	 58.78	-1	1744692..1744970	-	92	58581307	-	XOO1684	-	hypothetical protein
1515	 62.55	0	1745494..1748190	-	898	58581308	-	XOO1685	-	hypothetical protein
1516	 66.67	0	1748200..1748412	-	70	58581309	-	XOO1686	-	hypothetical protein
1517	 59.94	-1	1748698..1749024	-	108	58581310	-	XOO1687	-	hypothetical protein
1518	 57.08	-1	1749350..1749787	+	145	58581311	-	XOO1688	-	hypothetical protein
1519	 62.01	0	1750448..1751434	-	328	58581312	-	XOO1689	-	phage-related tail protein
1520	 64.43	0	1751431..1751832	-	133	58581313	-	XOO1690	-	phage-related tail protein
1521	 68.30	+1	1751845..1754715	-	956	58581314	-	XOO1691	-	phage-related tail protein
1522	 65.79	0	1754748..1754861	-	37	58581315	-	XOO1692	-	hypothetical protein
1523	 64.03	0	1754870..1755172	-	100	58581316	-	XOO1693	-	phage-related tail protein
1524	 62.16	0	1755218..1755727	-	169	58581317	-	XOO1694	-	phage-related tail protein
1525	 63.84	0	1755758..1756924	-	388	58581318	-	XOO1695	-	phage-related tail protein
1526	 68.89	+1	1756936..1757295	-	119	58581319	-	XOO1696	-	phage-related baseplate protein
1527	 65.43	0	1757292..1757855	-	187	58581320	-	XOO1697	-	phage-related baseplate protein
1528	 66.67	0	1757916..1758290	-	124	121632082	-	XOO4779	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.