IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1388	 65.66	0	1585852..1585950	-	32	121632074	-	XOO4768	-	hypothetical protein
1389	 67.86	+1	1586523..1587023	+	166	122879111	menG	XOO1555	-	ribonuclease activity regulator protein RraA
1390	 63.77	0	1586953..1588641	+	562	58581179	-	XOO1556	-	beta-lactamase
1391	 63.27	0	1588788..1590053	+	421	58581180	yjl094C	XOO1557	-	cation:proton antiporter
1392	 66.83	0	1590112..1591305	-	397	58581181	baeS	XOO1558	-	two-component system sensor protein
1393	 65.12	0	1591302..1593635	-	777	58581182	baeR	XOO1559	-	two-component system regulatory protein
1394	 65.71	0	1591995..1593566	+	523	58581183	ttgF	XOO1560	-	outer membrane channel protein
1395	 66.43	0	1593586..1594422	+	278	58581184	-	XOO1561	-	hypothetical protein
1396	 69.66	+1	1594448..1595551	+	367	58581185	mexC	XOO1562	-	RND efflux membrane fusion protein
1397	 66.27	0	1595548..1598607	+	1019	58581186	acr	XOO1563	-	acriflavin resistance protein
1398	 65.14	0	1598673..1599263	+	196	58581187	-	XOO1564	-	hypothetical protein
1399	 62.68	0	1599395..1601227	+	610	58581188	bapA	XOO1565	-	ABC transporter ATP-binding protein
1400	 56.99	-1	1601303..1601881	-	192	122879112	-	XOO1566	-	transposase
1401	 65.51	0	1601913..1602950	-	345	58581191	-	XOO1568	-	putative transposase
1402	 52.78	-2	1602994..1603209	-	71	58581192	-	XOO1569	-	transposase
1403	 63.11	0	1604285..1605520	+	411	58581195	-	XOO1572	-	transposase
1404	 60.80	0	1605358..1605783	-	141	121632075	-	XOO4769	-	putative ISXo8 transposase
1405	 63.48	0	1605788..1607011	-	407	58581196	-	XOO1573	-	ISxac1 transposase
1406	 54.02	-2	1607027..1607287	-	86	58581197	-	XOO1574	-	putative ISXo8 transposase
1407	 56.05	-2	1608522..1613012	+	1496	58581200	-	XOO1577	-	RhsD protein precursor
1408	 61.20	0	1613552..1614520	+	322	58581201	-	XOO1578	-	putative transposase
1409	 61.62	0	1614733..1614831	-	32	58581202	-	XOO1579	-	putative ISXo8 transposase
1410	 57.14	-1	1614785..1615120	+	111	121632076	-	XOO4770	-	putative ISXo8 transposase
1411	 59.18	-1	1615622..1617130	-	502	58581203	rhsD	XOO1580	-	RhsD protein
1412	 62.23	0	1617736..1618704	+	322	58581204	-	XOO1581	-	transposase
1413	 62.62	0	1619550..1620932	-	460	58581205	-	XOO1582	-	putative ISXo8 transposase
1414	 66.50	0	1620940..1621548	-	202	58581206	coaE	XOO1583	-	dephospho-CoA kinase
1415	 62.50	0	1621562..1622425	-	287	58581207	pilD	XOO1584	-	type IV pre-pilin leader peptidase
1416	 53.23	-2	1622432..1623637	-	401	122879113	pilC	XOO1585	-	fimbrial assembly protein
1417	 58.97	-1	1623965..1624471	+	168	58581209	pilE	XOO1586	-	pilin
1418	 61.54	0	1624537..1626195	+	552	58581210	-	XOO1587	-	putative integral membrane protein
1419	 61.23	0	1626805..1628331	+	508	58581211	-	XOO1588	-	putative integral membrane protein
1420	 61.07	0	1628312..1630099	+	595	58581212	pilB	XOO1589	-	pilus biogenesis protein
1421	 54.12	-2	1630108..1630362	-	84	58581213	fic	XOO1590	-	cell filamentation protein Fic
1422	 65.22	0	1630958..1632409	-	483	58581214	pilR	XOO1591	-	two-component system regulatory protein
1423	 66.23	0	1632680..1634293	-	537	122879114	pilS	XOO1592	-	two-component system sensor protein
1424	 61.62	0	1634527..1635696	+	389	58581216	sucC	XOO1593	-	succinyl-CoA synthetase subunit beta
1425	 64.27	0	1635721..1636596	+	291	58581217	sucD	XOO1594	-	succinyl-CoA synthetase subunit alpha
1426	 66.31	0	1637641..1639299	+	552	58581218	nadE	XOO1595	-	NAD synthetase
1427	 62.93	0	1639457..1640338	-	293	58581219	comL	XOO1596	-	competence lipoprotein
1428	 69.84	+1	1640447..1641454	+	335	58581220	rluD	XOO1597	-	ribosomal large subunit pseudouridine synthase D
1429	 70.76	+1	1641462..1642268	+	268	58581221	-	XOO1598	-	hypothetical protein
1430	 64.50	0	1642289..1642795	+	168	122879115	-	XOO1599	-	hypothetical protein
1431	 64.04	0	1642770..1643150	+	126	58581223	-	XOO1600	-	hypothetical protein
1432	 59.80	-1	1643074..1643175	+	33	121632077	-	XOO4771	-	hypothetical protein
1433	 60.53	0	1643400..1644767	-	455	58581224	ostA	XOO1601	-	trehalose-6-phosphate synthase
1434	 62.24	0	1644764..1646617	-	617	58581225	-	XOO1602	-	hypothetical protein
1435	 66.67	0	1646587..1647351	-	254	58581226	ostB	XOO1603	-	trehalose-6-phosphate phosphatase
1436	 64.46	0	1648663..1651197	-	844	58581227	bfeA	XOO1604	-	ferric enterobactin receptor
1437	 67.61	+1	1651280..1651807	+	175	58581228	-	XOO1605	-	hypothetical protein
1438	 62.90	0	1651903..1653150	-	415	58581229	-	XOO1606	-	hypothetical protein
1439	 66.54	0	1653426..1655027	+	533	122879116	-	XOO1607	-	hypothetical protein
1440	 55.10	-2	1655179..1655325	+	48	58581231	-	XOO1608	-	transposase
1441	 65.56	0	1655332..1656594	-	420	58581232	-	XOO1609	-	hypothetical protein
1442	 65.61	0	1656617..1657372	-	251	161899004	ate1	XOO1611	-	arginyl-tRNA-protein transferase
1443	 66.49	0	1657592..1658173	+	193	122879117	-	XOO1610	-	hypothetical protein
1444	 55.14	-2	1658307..1658792	-	161	58581235	-	XOO1612	-	hypothetical protein
1445	 66.79	0	1659017..1659796	-	259	58581236	rfaY	XOO1613	-	RNA polymerase sigma factor
1446	 65.56	0	1659872..1660414	-	180	58581237	pthX	XOO1614	-	pathogenicity-related protein
1447	 65.59	0	1660603..1661628	-	341	58581238	tesB	XOO1615	-	acyl-CoA thiolesterase II
1448	 69.26	+1	1661579..1662349	-	256	58581239	-	XOO1616	-	hypothetical protein
1449	 63.66	0	1662373..1662837	+	154	58581240	-	XOO1617	-	hypothetical protein
1450	 61.73	0	1662951..1663355	-	134	58581241	-	XOO1618	-	hypothetical protein
1451	 60.75	0	1666618..1666938	+	106	58581243	rplU	XOO1620	-	50S ribosomal protein L21
1452	 62.45	0	1666951..1667211	+	86	58581244	rpmA	XOO1621	-	50S ribosomal protein L27
1453	 65.05	0	1667444..1668496	+	350	58581245	obgE	XOO1622	-	GTPase ObgE
1454	 60.37	0	1668588..1668857	-	89	58581246	rpsT	XOO1623	-	30S ribosomal protein S20
1455	 64.38	0	1668959..1670578	+	539	58581247	mviN	XOO1624	-	virulence factor
1456	 65.33	0	1670597..1671793	+	398	58581248	ribF	XOO1625	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1457	 65.32	0	1671800..1674631	+	943	58581249	ileS	XOO1626	-	isoleucyl-tRNA synthetase
1458	 63.45	0	1674826..1675446	+	206	58581250	lspA	XOO1627	-	lipoprotein signal peptidase
1459	 65.51	0	1675535..1676485	+	316	161899003	ispH	XOO1628	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1460	 59.19	-1	1676999..1677934	+	311	122879118	cyoA	XOO1629	-	cytochrome O ubiquinol oxidase subunit II
1461	 60.53	0	1677913..1679934	+	673	58581253	cyoB	XOO1630	-	cytochrome O ubiquinol oxidase subunit I
1462	 61.77	0	1679931..1680563	+	210	58581254	cyoC	XOO1631	-	cytochrome O ubiquinol oxidase subunit III
1463	 59.23	-1	1680563..1680898	+	111	58581255	cyoD	XOO1632	-	cytochrome O ubiquinol oxidase subunit IV
1464	 62.25	0	1681248..1682945	+	565	122879119	-	XOO1633	-	hypothetical protein
1465	 60.37	0	1683146..1685416	+	756	58581257	vrgS	XOO1634	-	hypothetical protein
1466	 65.33	0	1685410..1687059	+	549	58581258	-	XOO1635	-	hypothetical protein
1467	 63.99	0	1687203..1691342	+	1379	58581259	-	XOO1636	-	hypothetical protein
1468	 65.51	0	1691386..1692423	+	345	58581260	-	XOO1637	-	putative transposase
1469	 63.04	0	1693525..1696419	+	964	58581261	-	XOO1638	-	hypothetical protein
1470	 63.57	0	1697689..1697817	+	42